BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0002.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773357.1| transcriptional regulator [Bradyrhizobium japon... 411 e-113 ref|YP_001242105.1| AraC/XylS family transcription factor [Brady... 392 e-107 ref|YP_001207654.1| AraC/XylS family transcription factor [Brady... 382 e-104 ref|ZP_01755521.1| transcriptional regulator, AraC family protei... 182 9e-44 ref|YP_004682546.1| AraC family transcriptional regulator [Cupri... 180 3e-43 >ref|NP_773357.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51982.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 341 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/334 (63%), Positives = 246/334 (73%), Gaps = 2/334 (0%) Query: 7 EVSARASSA-RLKDFARVATARVDDAAEAIGRIFCPHDLTPVDHSASDFSAHHNCAGFDG 65 E+SA AS+A RL DFARVAT VD+AAE IGRIFCPHDL P A+ FSA HNCA FDG Sbjct: 7 EMSASASAAERLADFARVATDDVDEAAEQIGRIFCPHDLKPAQARAAGFSARHNCAAFDG 66 Query: 66 FSVNYVAYGGSVAINPGCLDRFFLFQMPLSGSASVRTAARELTTGPRHTASLLSPTIPTE 125 FS+NYV YGGSV+I+PGCL+RFFL Q+PL+G+A +R A + P TASLLSPTIPT Sbjct: 67 FSINYVTYGGSVSIDPGCLERFFLLQVPLTGTARIRAGAGDFDAVPDRTASLLSPTIPTR 126 Query: 126 MTWRGDCAQLILLLDRKLVEHRAAALGGVTVRPVEFDPAIALSGPLGQTLSARIEHLVTA 185 M W DCAQ+ILLLDR++VE RAAAL G VEFDP I L P G+ L + L+T Sbjct: 127 MMW-SDCAQVILLLDRRMVEQRAAALSGRVAGTVEFDPVIDLDAPSGRALRTSLGGLMTL 185 Query: 186 AEQLGPRKTLSAVAAADWRESFLNVLLNGQRHSLSSAIDVFNGRTEAQPAALKRVRAFLE 245 AE+LGP LS VA ADWRE+ L+ LLNGQRH LS AI F+G+ E P AL+ R L Sbjct: 186 AERLGPSGRLSPVATADWREALLDHLLNGQRHGLSDAIRTFSGQAERLPRALRVARDRLA 245 Query: 246 SRATEPLDLAELAEIAGTGIRALQLGFRRHFGTTVSEMLLDIRLAHLNARLKTARPGERI 305 A EPLDLA+LA AG GIRALQLGFRRHFG ++SEMLLD+RLA L+ARL ARP I Sbjct: 246 DNAGEPLDLAQLACAAGIGIRALQLGFRRHFGVSISEMLLDMRLAGLHARLAQARPDASI 305 Query: 306 VDIAFDLGFTHLSRMASAYRAKFGESPKATLQXR 339 +IAFDLGFTHL RMA AYR KFGE+P ATL+ R Sbjct: 306 TEIAFDLGFTHLGRMAGAYREKFGETPSATLRRR 339 >ref|YP_001242105.1| AraC/XylS family transcription factor [Bradyrhizobium sp. BTAi1] gb|ABQ38199.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 347 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/333 (60%), Positives = 240/333 (72%), Gaps = 1/333 (0%) Query: 8 VSARASSARLKDFARVATARVDDAAEAIGRIFCPHDLTPVDHSASDFSAHHNCAGFDGFS 67 +S A RL + RVAT VD+AAE IGRIFCPH L P +A DF A HNCA FDGFS Sbjct: 11 LSLAAQPPRLAAYGRVATHDVDEAAEQIGRIFCPHGLQPQADAACDFVALHNCAAFDGFS 70 Query: 68 VNYVAYGGSVAINPGCLDRFFLFQMPLSGSASVRTAARELTTGPRHTASLLSPTIPTEMT 127 +NYVAYGG V I+PGCLDRFFL Q+PL+G+A V TAA E+ T P H ASLLSPT+PT M Sbjct: 71 INYVAYGGVVTIDPGCLDRFFLIQLPLAGAARVFTAANEVATAPEHRASLLSPTLPTRMI 130 Query: 128 WRGDCAQLILLLDRKLVEHRAAALGGVTVRPVEFDPAIALSGPLGQTLSARIEHLVTAAE 187 W DC+QLILLLDR LVE RAAAL G V+PVEFDP++ LS G L A + L AE Sbjct: 131 W-NDCSQLILLLDRPLVEQRAAALSGRAVQPVEFDPSVELSAAHGARLRAHMVELADLAE 189 Query: 188 QLGPRKTLSAVAAADWRESFLNVLLNGQRHSLSSAIDVFNGRTEAQPAALKRVRAFLESR 247 +LG + L A AAA+WRE+ LN+L + LS AI + +G+ + P A++ R L++ Sbjct: 190 RLGAERKLPAAAAANWRETLLNILFDQPSAGLSEAIRLHSGQVDTLPRAVRTARDLLDAH 249 Query: 248 ATEPLDLAELAEIAGTGIRALQLGFRRHFGTTVSEMLLDIRLAHLNARLKTARPGERIVD 307 A EPLDLA LA AG GIRALQ GFRRHFG ++S+MLLDIRLA LNA+L +A P RI+D Sbjct: 250 AAEPLDLAHLAASAGLGIRALQGGFRRHFGMSISDMLLDIRLARLNAQLLSAAPDARIID 309 Query: 308 IAFDLGFTHLSRMASAYRAKFGESPKATLQXRR 340 +AF+LGFTHL RMA AYR+KFGE+P ATLQ R Sbjct: 310 MAFELGFTHLGRMAGAYRSKFGETPSATLQRSR 342 >ref|YP_001207654.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278] emb|CAL79437.1| putative transcriptional regulator, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 349 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/326 (61%), Positives = 236/326 (72%), Gaps = 1/326 (0%) Query: 12 ASSARLKDFARVATARVDDAAEAIGRIFCPHDLTPVDHSASDFSAHHNCAGFDGFSVNYV 71 +SS RL + RVAT VD+AAE IGRIFCPH L P +A DF A HNCA +DGFS+NYV Sbjct: 14 SSSPRLAAYGRVATHDVDEAAEQIGRIFCPHGLQPQAGTARDFLALHNCAAYDGFSINYV 73 Query: 72 AYGGSVAINPGCLDRFFLFQMPLSGSASVRTAARELTTGPRHTASLLSPTIPTEMTWRGD 131 AYGG+VAINPGCLDRFFL Q+PL+G+A V T RE+ + P ASLLSPT+PT M W D Sbjct: 74 AYGGAVAINPGCLDRFFLVQLPLAGTARVMTGGREVVSHPEQAASLLSPTLPTRMVWH-D 132 Query: 132 CAQLILLLDRKLVEHRAAALGGVTVRPVEFDPAIALSGPLGQTLSARIEHLVTAAEQLGP 191 CAQLILLLDR LVE RAAAL G V+PVEF P IALS P G L R+ L AE LG Sbjct: 133 CAQLILLLDRSLVEQRAAALSGQAVQPVEFQPEIALSAPAGSRLQQRMISLAGVAESLGG 192 Query: 192 RKTLSAVAAADWRESFLNVLLNGQRHSLSSAIDVFNGRTEAQPAALKRVRAFLESRATEP 251 + +S AAADWRE+ L+ L H LS AI + G+ + P A++ R L ++A+EP Sbjct: 193 QGRISVAAAADWRETLLDALFEQSGHGLSEAIRRYAGQIDHLPRAVRTARDLLHAQASEP 252 Query: 252 LDLAELAEIAGTGIRALQLGFRRHFGTTVSEMLLDIRLAHLNARLKTARPGERIVDIAFD 311 LDLA+LA AG GIRALQ GFRRHFG ++S+MLLDIRLA LNA+L A P RI+D+AF+ Sbjct: 253 LDLAQLAAAAGVGIRALQGGFRRHFGMSISDMLLDIRLARLNAQLTAAGPETRIIDLAFE 312 Query: 312 LGFTHLSRMASAYRAKFGESPKATLQ 337 LGFTHL RMA AYR KFGE+P ATLQ Sbjct: 313 LGFTHLGRMAGAYRDKFGETPSATLQ 338 >ref|ZP_01755521.1| transcriptional regulator, AraC family protein [Roseobacter sp. SK209-2-6] gb|EBA15773.1| transcriptional regulator, AraC family protein [Roseobacter sp. SK209-2-6] Length = 358 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 170/322 (52%), Gaps = 5/322 (1%) Query: 17 LKDFARVATARVDDAAEAIGRIFCPHDLTPVDHSASDFSAHHNCAGFDGFSVNYVAYGGS 76 L F T +D A A+ FC H L+P SA F A HN + S+NY++YG Sbjct: 36 LNAFPLFQTRDIDRARHAVASKFCTHSLSPAK-SAEGFDACHNHLAWSDVSLNYLSYGCE 94 Query: 77 VAINPGCLDRFFLFQMPLSGSASVRTAARELTTGPRHTASLLSPTIPTEMTWRGDCAQLI 136 V I PG L+RF+L Q+PL G A V+ E+ R A++L+PT T+M W C +L+ Sbjct: 95 VKIEPGELERFYLIQVPLQGRAIVKNGRVEVRAD-RSCATVLNPTRDTQMVWGEGCCKLL 153 Query: 137 LLLDRKLVEHRAAALGGVTV-RPVEFDPAIALSGPLGQTLSARIEHLVTAAEQLGPRKTL 195 L ++R+ + +A L + V F PA+ + P + +V AE+ Sbjct: 154 LQINREALHLQAEELLQRKLSEAVLFAPAVDMRNPGLLHWVNDLFSVVGLAEEGEAFSGR 213 Query: 196 SAVAAADWRESFLNVLLNGQRHSLSSAIDVFNGRTEAQPAALKRVRAFLESRATEPLDLA 255 +A+ ES + L Q S+S ++ R +A P L+R + F+ S TEPL LA Sbjct: 214 AALRQPRMEESLILGFLTQQPSSISH--ELREERPDALPHQLRRAQEFINSNLTEPLTLA 271 Query: 256 ELAEIAGTGIRALQLGFRRHFGTTVSEMLLDIRLAHLNARLKTARPGERIVDIAFDLGFT 315 E+++ AG +R+LQ+GFR+HFG T L RL H + L++ R+ +AFD GF+ Sbjct: 272 EISKAAGCSLRSLQVGFRKHFGVTPMGYLNCQRLNHAHYLLQSRTGARRVSTVAFDAGFS 331 Query: 316 HLSRMASAYRAKFGESPKATLQ 337 HL R + AYR FG SPK TLQ Sbjct: 332 HLGRFSIAYRKAFGCSPKETLQ 353 >ref|YP_004682546.1| AraC family transcriptional regulator [Cupriavidus necator N-1] gb|AEI81314.1| transcriptional regulator AraC family [Cupriavidus necator N-1] Length = 354 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 15/324 (4%) Query: 20 FARVATARVDDAAEAIGRI---FCPHDLTPVDHSASDFSAHHNCAGFDGFSVNYVAYGGS 76 A + R +D EA G+I FCPH+L V + HN ++N++AYG Sbjct: 27 LANYPSFRSEDVKEAQGKIASVFCPHELRVVG-ALQQLHVQHNLVRLHETALNFLAYGAH 85 Query: 77 VAINPGCLDRFFLFQMPLSGSASVRTAARELTTGPRHTASLLSPTIPTEMTWRGDCAQLI 136 V I+PGCL+ F+L Q+P++G A ++ ++E+ + R TASLLSP PT M W DCAQ++ Sbjct: 86 VEIDPGCLEHFYLAQIPVAGHAEIKCGSQEILSDVR-TASLLSPDTPTRMHWHEDCAQVL 144 Query: 137 LLLDRKLVEHRAAALGGVTVR-PVEFDPAIALSGPLGQTLSARIEHLVTAAEQLGPRKTL 195 L + ++ +E R A L G P+ FDPA+ S + L +Q G Sbjct: 145 LWIQKEAIEQRFALLTGRDPSGPLSFDPALP-----QHAWSQSVLDLTRNIDQHGTNWLQ 199 Query: 196 SAVAAADWRESFLNVLLNGQRHSLSSAIDVFNGRTEAQPAALKRVRAFLESRATEPLDLA 255 A A + L LL Q H+ + + A+P ++RV ++ + A PL +A Sbjct: 200 FPAAVASMEDYLLRTLLLLQPHTHTYLLA--RSAEPARPRHMQRVIDYVRANADTPLTVA 257 Query: 256 ELAEIAGTGIRALQLGFRRHFGTTVSEMLLDIRLAHLNARLKTARPGER--IVDIAFDLG 313 +LA++A IRAL+ GFRRH TT L D RL + L A E+ I D+A+ G Sbjct: 258 DLAQVACVSIRALEEGFRRHLNTTPLAYLRDARLDCVRQALIAAAGAEQASITDLAYRFG 317 Query: 314 FTHLSRMASAYRAKFGESPKATLQ 337 FTHL R A+ Y+ +FG SP ATL+ Sbjct: 318 FTHLGRFAAYYKKRFGVSPSATLR 341