BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0223.0011.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240252.1| putative branched-chain amino acid ABC trans... 486 e-135 ref|YP_001205427.1| putative branched-chain amino acid ABC trans... 478 e-133 ref|YP_004155773.1| inner-membrane translocator [Variovorax para... 455 e-126 ref|YP_003451768.1| branched-chain amino acid transport system p... 450 e-124 ref|ZP_07674385.1| branched-chain amino acid ABC transporter, pe... 446 e-123 >ref|YP_001240252.1| putative branched-chain amino acid ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ36346.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 351 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 270/307 (87%), Positives = 290/307 (94%) Query: 27 FGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLHL 86 +G++PL GSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNL+L Sbjct: 32 YGLVPLIGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLNL 91 Query: 87 RLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSN 146 RLP+LPLL D+VLAG +AAA+GI+FGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSN Sbjct: 92 RLPQLPLLADIVLAGGIAAAVGIIFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSN 151 Query: 147 DNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRDHEI 206 DN SGVIDAP + + +FTSA GRY+FSL +V VAT+LT LL SQTGRNFIAVRDHEI Sbjct: 152 DNASGVIDAPVIRVGSLTFTSATGRYVFSLTIVAVATVLTARLLSSQTGRNFIAVRDHEI 211 Query: 207 AAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGG 266 AA+VIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGG Sbjct: 212 AARVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGG 271 Query: 267 LASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAEPRG 326 LASLRGAF+GAAFI+VFPL+LSRLGAA+LG VFDSGVLEMSQRIVIGALIIAFLIAEPRG Sbjct: 272 LASLRGAFIGAAFIIVFPLLLSRLGAAVLGSVFDSGVLEMSQRIVIGALIIAFLIAEPRG 331 Query: 327 LIALWDR 333 LIAL DR Sbjct: 332 LIALVDR 338 >ref|YP_001205427.1| putative branched-chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL77197.1| putative branched-chain amino acid ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 351 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 270/305 (88%), Positives = 285/305 (93%) Query: 29 VIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLHLRL 88 V+P GSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNL+LRL Sbjct: 34 VVPWIGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYNLNLRL 93 Query: 89 PELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSNDN 148 P LPLL D+VLAG +AAA+GIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSNDN Sbjct: 94 PVLPLLADIVLAGGIAAAMGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGWFSNDN 153 Query: 149 PSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRDHEIAA 208 SGVIDAP + + G +FTSA GRY+FSL +V VAT LT LL SQTGRNFIAVRDHE+AA Sbjct: 154 ASGVIDAPVIRVGGLTFTSATGRYVFSLTIVVVATALTARLLASQTGRNFIAVRDHEVAA 213 Query: 209 KVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGGLA 268 KVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGGLA Sbjct: 214 KVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIIIIGGLA 273 Query: 269 SLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAEPRGLI 328 SLRGAF+GAAFIVVFPL+LSRLGAA+LG VFD GVLEMSQRIVIGALIIAFLIAEPRGL+ Sbjct: 274 SLRGAFIGAAFIVVFPLLLSRLGAAVLGSVFDRGVLEMSQRIVIGALIIAFLIAEPRGLV 333 Query: 329 ALWDR 333 AL DR Sbjct: 334 ALIDR 338 >ref|YP_004155773.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU37662.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 370 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/312 (74%), Positives = 273/312 (87%) Query: 24 VITFGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYN 83 VI FG++P S Y+ DA+L PFLAL+LAAVGLN+LTGYAGQ+SLG+AAF+AVGA+AAYN Sbjct: 21 VIAFGIVPFTASGYVFDALLIPFLALSLAAVGLNLLTGYAGQLSLGTAAFMAVGAFAAYN 80 Query: 84 LHLRLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGW 143 +LR+ LPLL+ + LAGL A A+G+VFGLPSLRLRGFYLAVSTLAAQFFVQWALTKF W Sbjct: 81 FNLRVDGLPLLVSIGLAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFSW 140 Query: 144 FSNDNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRD 203 FSNDN SGVIDAPAL +AG F + GRY+FSL++VTV T+L L+++QTG +FIAVRD Sbjct: 141 FSNDNASGVIDAPALEVAGIVFDTPVGRYIFSLSIVTVLTLLAWRLVRTQTGHHFIAVRD 200 Query: 204 HEIAAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIII 263 +E+AA+VIGVP+LRTKLLAF VSSF++GVAGVLW F YLRTVEPAGFNLDRSFQILFI+I Sbjct: 201 NELAARVIGVPVLRTKLLAFAVSSFIVGVAGVLWGFVYLRTVEPAGFNLDRSFQILFIVI 260 Query: 264 IGGLASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAE 323 IGGLA++RGAF GAA IVVFPL+LSR+G+ L GG FDSGVL+MSQRIV+GALII FL E Sbjct: 261 IGGLATIRGAFFGAALIVVFPLLLSRVGSFLFGGWFDSGVLDMSQRIVLGALIIFFLAME 320 Query: 324 PRGLIALWDRFR 335 P+GL+ALWDR R Sbjct: 321 PQGLVALWDRAR 332 >ref|YP_003451768.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] dbj|BAI75224.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] Length = 351 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/327 (72%), Positives = 282/327 (86%), Gaps = 2/327 (0%) Query: 7 PRQTLPVIDRILIGIGAVITFGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQV 66 PR+ P + I + + ++ +GV+PL GS+YL DA+LTPFLALALA +GLN+LTGYAGQV Sbjct: 14 PRRVSPALPGIALLL--IVAYGVLPLVGSEYLFDAILTPFLALALAGLGLNILTGYAGQV 71 Query: 67 SLGSAAFLAVGAYAAYNLHLRLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVS 126 SLGS+AF+AVGAYAAYNL LRLP +P LLD++LAGL+AAA+G++FGLPSLRLRGFYLAVS Sbjct: 72 SLGSSAFMAVGAYAAYNLALRLPGVPFLLDILLAGLIAAAVGLLFGLPSLRLRGFYLAVS 131 Query: 127 TLAAQFFVQWALTKFGWFSNDNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILT 186 TLAAQFFVQW K GWFSND+PSG++ P L++AG++ S+AGRYLF+L VVT T+ Sbjct: 132 TLAAQFFVQWIFNKVGWFSNDSPSGIVTVPPLSVAGFTLDSSAGRYLFALGVVTAVTLAV 191 Query: 187 LLLLQSQTGRNFIAVRDHEIAAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVE 246 L++S TGR +A+RDHE AA+VIG+P+LR KLLAF VSSF+IGVAGVLWAFAYLRTVE Sbjct: 192 WRLVESPTGRALVALRDHETAARVIGIPVLRVKLLAFAVSSFIIGVAGVLWAFAYLRTVE 251 Query: 247 PAGFNLDRSFQILFIIIIGGLASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEM 306 PAGFNLDRSFQILFI+IIGGLASLRGAFLGAA IVVFPL+L+RLG ALLGG+FDSGVLEM Sbjct: 252 PAGFNLDRSFQILFIVIIGGLASLRGAFLGAALIVVFPLLLARLGEALLGGLFDSGVLEM 311 Query: 307 SQRIVIGALIIAFLIAEPRGLIALWDR 333 SQRIV+G LI+ FLIAEP GL AL DR Sbjct: 312 SQRIVLGLLIVTFLIAEPAGLTALLDR 338 >ref|ZP_07674385.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP67205.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 347 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/310 (72%), Positives = 271/310 (87%) Query: 24 VITFGVIPLAGSDYLMDAVLTPFLALALAAVGLNVLTGYAGQVSLGSAAFLAVGAYAAYN 83 ++ + V+PL SDY +DA+L PFLAL+LAAVGLN+LTGYAGQ+S+GSAAF+AVGA+AAYN Sbjct: 23 LVAYFVVPLVASDYWLDAILIPFLALSLAAVGLNLLTGYAGQLSVGSAAFMAVGAFAAYN 82 Query: 84 LHLRLPELPLLLDLVLAGLVAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFGW 143 +LR+ LPL + +VLAGL A AIG+ FGLPSLRLRGFYLAVSTLAAQFFVQWALTK+GW Sbjct: 83 FNLRVEGLPLPVSIVLAGLAATAIGVAFGLPSLRLRGFYLAVSTLAAQFFVQWALTKYGW 142 Query: 144 FSNDNPSGVIDAPALTIAGYSFTSAAGRYLFSLAVVTVATILTLLLLQSQTGRNFIAVRD 203 FSN+N SGVIDAP + +AG++F + A RY+F+L VVT+ T L L+Q+ TG +FIAVRD Sbjct: 143 FSNNNASGVIDAPPIVVAGFAFDTPALRYVFALTVVTILTALVWRLVQTPTGHHFIAVRD 202 Query: 204 HEIAAKVIGVPLLRTKLLAFGVSSFLIGVAGVLWAFAYLRTVEPAGFNLDRSFQILFIII 263 +E+AA+V GVP+LRTKLLAF +SSF+IGVAGVLW F YLRTVEPAGFNLDRSFQILFI+I Sbjct: 203 NEMAARVTGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSFQILFIVI 262 Query: 264 IGGLASLRGAFLGAAFIVVFPLILSRLGAALLGGVFDSGVLEMSQRIVIGALIIAFLIAE 323 IGGLA++RGAFLGAA +VVFPL+LSR GA + GG FDSGVL++SQRIVIGALI+AFLIAE Sbjct: 263 IGGLATIRGAFLGAALVVVFPLLLSRFGAFVFGGRFDSGVLDLSQRIVIGALIVAFLIAE 322 Query: 324 PRGLIALWDR 333 P+GL ALW R Sbjct: 323 PQGLAALWQR 332