BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0223.0010.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240251.1| hypothetical protein BBta_4295 [Bradyrhizobi... 776 0.0 ref|YP_001205428.1| branched-chain amino acid ABC transporter su... 770 0.0 ref|YP_004139508.1| hypothetical protein Mesci_0285 [Mesorhizobi... 736 0.0 ref|YP_002542294.1| branched-chain amino acid binding protein, A... 735 0.0 ref|NP_105922.1| hypothetical protein mlr5223 [Mesorhizobium lot... 733 0.0 >ref|YP_001240251.1| hypothetical protein BBta_4295 [Bradyrhizobium sp. BTAi1] gb|ABQ36345.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 447 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/429 (91%), Positives = 408/429 (95%), Gaps = 2/429 (0%) Query: 4 LAFAGAPAV--HADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTW 61 LAF A ++ ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTW Sbjct: 19 LAFGLATSLPAKADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTW 78 Query: 62 DEGETQYEVERGVEVYERLKNRLGVAAWNPLSVGIAYAMIDRITKDKVPLITVNHGRTDS 121 DEGETQYEVERGVEVYERLK R GVAAWNPLSVGIAYAMIDRI+KDKVPLIT+NHGRTDS Sbjct: 79 DEGETQYEVERGVEVYERLKGRPGVAAWNPLSVGIAYAMIDRISKDKVPLITINHGRTDS 138 Query: 122 TDGRVFPYVFPLLLNPYSETSGIVNYIASREGGVDRLKDKKIVVLYHGSPYGKETIPIYK 181 TDGRVFPYVFPLLLNPYSETSGIVNYIA+REGG ++LK KKIVVLYHGSPYGKETIPIYK Sbjct: 139 TDGRVFPYVFPLLLNPYSETSGIVNYIATREGGSEKLKGKKIVVLYHGSPYGKETIPIYK 198 Query: 182 LLADKYHFSVEQIEVPHPGNEQQSQWLSIRRAKPDYVVLRGWGVMNPVALKTAQKVGFPA 241 LLADKY F +EQIEVPHPGNEQQSQWLSIRRAK DYVVLRGWGVMNPVALKTAQKVGFP Sbjct: 199 LLADKYGFELEQIEVPHPGNEQQSQWLSIRRAKADYVVLRGWGVMNPVALKTAQKVGFPV 258 Query: 242 DHIIGNVWSNSEEDVIPAGDAAKGYIAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKR 301 DHIIGNVWSNSEEDVIPAGDAAKGY+AITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKR Sbjct: 259 DHIIGNVWSNSEEDVIPAGDAAKGYVAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKR 318 Query: 302 IGSVYHNLGIVNGILNVEAIRIAQAKFGERTLTGDEVRWGFEHLQLNPARVEALGAKGLF 361 IGSVYHNLGIVNGILNVEA+RIAQ KFG+RTLTGDEVRWGFEHL L+PARVEALGAKGLF Sbjct: 319 IGSVYHNLGIVNGILNVEAVRIAQEKFGKRTLTGDEVRWGFEHLALDPARVEALGAKGLF 378 Query: 362 HSINVTWDNHEGDGRVTFQQWDGAKWKVVSDWIAPDWASLRPIIEKSAAAYAQEHGITPR 421 HSINVTWDNHEG+GRVTFQQWDGAKWKVVSDWI+PDWA+LRPIIEKS+ AYAQE GI R Sbjct: 379 HSINVTWDNHEGNGRVTFQQWDGAKWKVVSDWISPDWAALRPIIEKSSTAYAQERGIKIR 438 Query: 422 TSGDDPVSQ 430 TSGDDPV Q Sbjct: 439 TSGDDPVGQ 447 >ref|YP_001205428.1| branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77198.1| hypothetical protein; putative branched-chain amino acid ABC transporter, substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 448 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/421 (91%), Positives = 404/421 (95%), Gaps = 1/421 (0%) Query: 10 PAVHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDEGETQYE 69 PA+ ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLIN RDGGVNGVKLTWDEGETQYE Sbjct: 29 PAL-ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINTRDGGVNGVKLTWDEGETQYE 87 Query: 70 VERGVEVYERLKNRLGVAAWNPLSVGIAYAMIDRITKDKVPLITVNHGRTDSTDGRVFPY 129 VERGVEVYERLK+R GVAAWNPLSVGIAYAMIDRI+KDKVPLIT+NHGRTDSTDGRVFPY Sbjct: 88 VERGVEVYERLKSRPGVAAWNPLSVGIAYAMIDRISKDKVPLITINHGRTDSTDGRVFPY 147 Query: 130 VFPLLLNPYSETSGIVNYIASREGGVDRLKDKKIVVLYHGSPYGKETIPIYKLLADKYHF 189 VFPLLLNPYSETSGIVNYIA+REGG ++LK KKIVVLYHGSPYGKETIPIYKLL+DKY F Sbjct: 148 VFPLLLNPYSETSGIVNYIATREGGPEKLKGKKIVVLYHGSPYGKETIPIYKLLSDKYGF 207 Query: 190 SVEQIEVPHPGNEQQSQWLSIRRAKPDYVVLRGWGVMNPVALKTAQKVGFPADHIIGNVW 249 +EQIEVPHPGNEQQSQWLSIRRAK DYVVLRGWGVMNPVALKTAQK GFP DHIIGNVW Sbjct: 208 ELEQIEVPHPGNEQQSQWLSIRRAKADYVVLRGWGVMNPVALKTAQKTGFPVDHIIGNVW 267 Query: 250 SNSEEDVIPAGDAAKGYIAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKRIGSVYHNL 309 SNSEEDVIPAGDAAKGY+AITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKRIGSVYHNL Sbjct: 268 SNSEEDVIPAGDAAKGYVAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKRIGSVYHNL 327 Query: 310 GIVNGILNVEAIRIAQAKFGERTLTGDEVRWGFEHLQLNPARVEALGAKGLFHSINVTWD 369 GIVNGILNVEA+RIAQ KFG+RTL GDEVRWGFEHLQL+PARVEALGAKGLFHSINVTWD Sbjct: 328 GIVNGILNVEAVRIAQEKFGKRTLAGDEVRWGFEHLQLDPARVEALGAKGLFHSINVTWD 387 Query: 370 NHEGDGRVTFQQWDGAKWKVVSDWIAPDWASLRPIIEKSAAAYAQEHGITPRTSGDDPVS 429 NHEG+GRVTFQQWDGAKWKVVSDWI+PDWA+LRPIIEKS+ AYAQE GI RTSGDDPV Sbjct: 388 NHEGNGRVTFQQWDGAKWKVVSDWISPDWAALRPIIEKSSTAYAQERGIKIRTSGDDPVG 447 Query: 430 Q 430 Q Sbjct: 448 Q 448 >ref|YP_004139508.1| hypothetical protein Mesci_0285 [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV09458.1| hypothetical protein Mesci_0285 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 445 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/416 (87%), Positives = 386/416 (92%) Query: 10 PAVHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDEGETQYE 69 PA HADEQ+FPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDE ETQYE Sbjct: 23 PAAHADEQYFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDECETQYE 82 Query: 70 VERGVEVYERLKNRLGVAAWNPLSVGIAYAMIDRITKDKVPLITVNHGRTDSTDGRVFPY 129 VERGVE YER K+ G AAWNPLSVGIAYAMIDRIT DKVPLITVNHGRTDSTDGRVFPY Sbjct: 83 VERGVECYERQKSHAGAAAWNPLSVGIAYAMIDRITADKVPLITVNHGRTDSTDGRVFPY 142 Query: 130 VFPLLLNPYSETSGIVNYIASREGGVDRLKDKKIVVLYHGSPYGKETIPIYKLLADKYHF 189 VFPLLLNPYSETSGIVNYIAS+EGG+D+LK KKIVVLYHGSPYGKETIPIY+LLA KY F Sbjct: 143 VFPLLLNPYSETSGIVNYIASKEGGIDKLKGKKIVVLYHGSPYGKETIPIYELLAQKYGF 202 Query: 190 SVEQIEVPHPGNEQQSQWLSIRRAKPDYVVLRGWGVMNPVALKTAQKVGFPADHIIGNVW 249 +V+QIEVPHPGNEQQSQWL+IRRAKPD+VVLRGWGVMNPVALKTA KVG+P DHI+GNVW Sbjct: 203 TVQQIEVPHPGNEQQSQWLTIRRAKPDFVVLRGWGVMNPVALKTAVKVGYPVDHIVGNVW 262 Query: 250 SNSEEDVIPAGDAAKGYIAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKRIGSVYHNL 309 SNSEEDVIPAGDAAKGY AITTQASG YPV+QE++KTVYGAGKGNL+DK RIGSVYHNL Sbjct: 263 SNSEEDVIPAGDAAKGYTAITTQASGNSYPVVQEIVKTVYGAGKGNLEDKARIGSVYHNL 322 Query: 310 GIVNGILNVEAIRIAQAKFGERTLTGDEVRWGFEHLQLNPARVEALGAKGLFHSINVTWD 369 GIVNGILNVEAIRIAQ KFG RTLTGDEVRWGFEHL+L+PA+VEALGAK LFHSINV+WD Sbjct: 323 GIVNGILNVEAIRIAQEKFGHRTLTGDEVRWGFEHLKLDPAKVEALGAKDLFHSINVSWD 382 Query: 370 NHEGDGRVTFQQWDGAKWKVVSDWIAPDWASLRPIIEKSAAAYAQEHGITPRTSGD 425 NHEG+G VTFQQWDG KW VVSDWIAPDWA LRPIIEKSA AYA E GI RT+ D Sbjct: 383 NHEGEGYVTFQQWDGKKWNVVSDWIAPDWALLRPIIEKSAEAYAAEKGIKLRTADD 438 >ref|YP_002542294.1| branched-chain amino acid binding protein, ABC transporter [Agrobacterium radiobacter K84] gb|ACM30697.1| branched-chain amino acid binding protein, ABC transporter [Agrobacterium radiobacter K84] Length = 444 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/424 (86%), Positives = 388/424 (91%) Query: 2 GVLAFAGAPAVHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTW 61 G+ A PA HADEQ+FPLQSYRVGPYAAGGTGFFGGFIDYLNLIN RDGGVNGVKLTW Sbjct: 15 GLAVSAAIPAAHADEQYFPLQSYRVGPYAAGGTGFFGGFIDYLNLINTRDGGVNGVKLTW 74 Query: 62 DEGETQYEVERGVEVYERLKNRLGVAAWNPLSVGIAYAMIDRITKDKVPLITVNHGRTDS 121 E ETQYEVERGVE YERLK+ +AAWNPLSVGIAYAMIDRIT+DKVPLITVNHGRTDS Sbjct: 75 SEAETQYEVERGVEAYERLKSNPNIAAWNPLSVGIAYAMIDRITQDKVPLITVNHGRTDS 134 Query: 122 TDGRVFPYVFPLLLNPYSETSGIVNYIASREGGVDRLKDKKIVVLYHGSPYGKETIPIYK 181 TDGRVFPYVFPLLLNPYSETSGIVNYIAS+ GGVD+LK KKIVVLYHGSPYGKETIPIY+ Sbjct: 135 TDGRVFPYVFPLLLNPYSETSGIVNYIASKLGGVDKLKGKKIVVLYHGSPYGKETIPIYE 194 Query: 182 LLADKYHFSVEQIEVPHPGNEQQSQWLSIRRAKPDYVVLRGWGVMNPVALKTAQKVGFPA 241 LL+ KY F ++QIEVPHPGNEQQ+QWL+IRRAKPDYVVLRGWGVMNPVALKTA K GFP Sbjct: 195 LLSQKYGFDLQQIEVPHPGNEQQAQWLTIRRAKPDYVVLRGWGVMNPVALKTAAKTGFPV 254 Query: 242 DHIIGNVWSNSEEDVIPAGDAAKGYIAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKR 301 DHIIGNVWSNSEEDVIPAGDAAKGY AITTQASG EYP++QE++KT+Y GKGNL+DKKR Sbjct: 255 DHIIGNVWSNSEEDVIPAGDAAKGYTAITTQASGTEYPIVQEIVKTLYDNGKGNLEDKKR 314 Query: 302 IGSVYHNLGIVNGILNVEAIRIAQAKFGERTLTGDEVRWGFEHLQLNPARVEALGAKGLF 361 IGSVYHNLGIVNGILNVEAIRIAQ KFG RTLTGDEVRWGFEHLQL+PARVEALGAKGLF Sbjct: 315 IGSVYHNLGIVNGILNVEAIRIAQGKFGHRTLTGDEVRWGFEHLQLDPARVEALGAKGLF 374 Query: 362 HSINVTWDNHEGDGRVTFQQWDGAKWKVVSDWIAPDWASLRPIIEKSAAAYAQEHGITPR 421 HSINVTWDNHEG+G VTFQQWDG KW VVSDWIAPDWA LRPIIEKS+ AYA+E GI R Sbjct: 375 HSINVTWDNHEGNGYVTFQQWDGKKWNVVSDWIAPDWALLRPIIEKSSEAYAKEKGIKLR 434 Query: 422 TSGD 425 TS D Sbjct: 435 TSED 438 >ref|NP_105922.1| hypothetical protein mlr5223 [Mesorhizobium loti MAFF303099] dbj|BAB51708.1| mlr5223 [Mesorhizobium loti MAFF303099] Length = 445 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/416 (86%), Positives = 386/416 (92%) Query: 10 PAVHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDEGETQYE 69 PA HADEQ+FPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDE ETQYE Sbjct: 23 PAAHADEQYFPLQSYRVGPYAAGGTGFFGGFIDYLNLINIRDGGVNGVKLTWDECETQYE 82 Query: 70 VERGVEVYERLKNRLGVAAWNPLSVGIAYAMIDRITKDKVPLITVNHGRTDSTDGRVFPY 129 VERGVE YER K+ G AAWNPLSVGIAYAMIDRIT DKVPLITVNHGRTDSTDGRVFPY Sbjct: 83 VERGVECYERQKSHAGAAAWNPLSVGIAYAMIDRITADKVPLITVNHGRTDSTDGRVFPY 142 Query: 130 VFPLLLNPYSETSGIVNYIASREGGVDRLKDKKIVVLYHGSPYGKETIPIYKLLADKYHF 189 VFPLLLNPYSETSGIVNYIA++EGG+D+LK KKIVVLYHGSPYGKETIPIY+LLA KY F Sbjct: 143 VFPLLLNPYSETSGIVNYIAAKEGGIDKLKGKKIVVLYHGSPYGKETIPIYELLAQKYGF 202 Query: 190 SVEQIEVPHPGNEQQSQWLSIRRAKPDYVVLRGWGVMNPVALKTAQKVGFPADHIIGNVW 249 +V+QIEVPHPGNEQQSQWL+IRRAKPD+VVLRGWGVMNPVALKTA KVG+P DHI+GNVW Sbjct: 203 TVQQIEVPHPGNEQQSQWLTIRRAKPDFVVLRGWGVMNPVALKTAVKVGYPVDHIVGNVW 262 Query: 250 SNSEEDVIPAGDAAKGYIAITTQASGAEYPVLQEVIKTVYGAGKGNLDDKKRIGSVYHNL 309 SNSEEDVIPAGDAA+GY AITTQASG YPV+QE++KTVYGAGKGNL+DK RIGSVYHNL Sbjct: 263 SNSEEDVIPAGDAARGYTAITTQASGNTYPVVQEIVKTVYGAGKGNLEDKSRIGSVYHNL 322 Query: 310 GIVNGILNVEAIRIAQAKFGERTLTGDEVRWGFEHLQLNPARVEALGAKGLFHSINVTWD 369 GIVNGILNVEAIR+AQ KFG RTLTGDEVRWGFEHL+L+PA+VEALGAK LFHSINV+WD Sbjct: 323 GIVNGILNVEAIRVAQEKFGHRTLTGDEVRWGFEHLKLDPAKVEALGAKDLFHSINVSWD 382 Query: 370 NHEGDGRVTFQQWDGAKWKVVSDWIAPDWASLRPIIEKSAAAYAQEHGITPRTSGD 425 NHEG+G VTFQQWDG KW VVSDWIAPDWA LRPIIEKSA AYA E GI RT+ D Sbjct: 383 NHEGEGYVTFQQWDGKKWNVVSDWIAPDWALLRPIIEKSAEAYAAEKGIKLRTADD 438