BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0222.0005.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002290616.1| hypothetical protein OCAR_7653 [Oligotropha ... 328 9e-88 ref|YP_003068129.1| hypothetical protein METDI2596 [Methylobacte... 318 8e-85 ref|YP_571918.1| hypothetical protein Nham_4505 [Nitrobacter ham... 308 7e-82 ref|YP_001220594.1| hypothetical protein BBta_p0290 [Bradyrhizob... 307 2e-81 ref|YP_003068133.1| hypothetical protein METDI2601 [Methylobacte... 248 1e-63 >ref|YP_002290616.1| hypothetical protein OCAR_7653 [Oligotropha carboxidovorans OM5] ref|YP_004634475.1| hypothetical protein OCA5_pOC16701620 [Oligotropha carboxidovorans OM5] gb|ACI94751.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI04729.1| hypothetical protein OCA4_pOC167B01620 [Oligotropha carboxidovorans OM4] gb|AEI08358.1| hypothetical protein OCA5_pOC16701620 [Oligotropha carboxidovorans OM5] Length = 398 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 208/319 (65%), Positives = 226/319 (70%), Gaps = 32/319 (10%) Query: 6 RPAKSPIRDGWIARTHFSDAAACLWLEGELVHLEDLVLHDAGMDVRAPTHELIRAHAVLR 65 R AKSPIRDGW ARTHF+DA A LWLEGELVHL+DLVLHDAGMD+R PTHEL RAH VLR Sbjct: 48 RLAKSPIRDGWAARTHFTDACASLWLEGELVHLDDLVLHDAGMDIRTPTHELTRAHTVLR 107 Query: 66 ARRRIATAKPDWALSRTGLASLRGR------DGKGDGDEGIEEDIDAPDDAIEGIEEAEP 119 ARRRIA AK DWALS GLA LRGR DG D DE E++ P+D +G + Sbjct: 108 ARRRIAEAKADWALSAAGLAGLRGRGERSREDGARDRDED-EDEARGPEDE-DGDADTGE 165 Query: 120 SGSLHDTDPRLAAAFAAVDAANANAARTLAGKTRAGL----ERDPLVYDLDWDEDARLDE 175 + + TD RLA FAAVDAA A A RTLAG+ ERDPLVYDLDWDED RLD Sbjct: 166 AFRVAPTDDRLADVFAAVDAAIAQADRTLAGENNGRRQPRPERDPLVYDLDWDEDERLDS 225 Query: 176 WRAVVEQTRTLPPTL-AAAIAXAWSAIAPLQHTPWLGRLLAASMLCARAKTRWHLPCLQE 234 WR VV+QTR LPPTL +A A AW+AI PLQHTPWLGRLL AS+L R K R HLPCL E Sbjct: 226 WRTVVDQTRNLPPTLASAIAADAWAAIEPLQHTPWLGRLLGASLLRERGKARMHLPCLNE 285 Query: 235 GLKAIPLERR-------------------GGXGLKNHDRWLTARTLLVRKLDGRRSTSRL 275 GLKAIP ERR GLK+HDRWLTARTLL RKLDGRRSTSRL Sbjct: 286 GLKAIPRERRRPADRAGRLAVQLEAIAAAAAAGLKDHDRWLTARTLLARKLDGRRSTSRL 345 Query: 276 PALVDYVFTRPLVSAGMIA 294 PAL+DYV TRP+VSAGMIA Sbjct: 346 PALLDYVLTRPIVSAGMIA 364 >ref|YP_003068129.1| hypothetical protein METDI2596 [Methylobacterium extorquens DM4] emb|CAX24249.1| conserved hypothetical protein, DUF1612 family protein [Methylobacterium extorquens DM4] Length = 373 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 193/308 (62%), Positives = 213/308 (69%), Gaps = 29/308 (9%) Query: 10 SPIRDGWIARTHFSDAAACLWLEGELVHLEDLVLHDAGMDVRAPTHELIRAHAVLRARRR 69 SPIRDGWIARTHFSDAAA LWLEGEL+HLEDLVLHDAGMDVRAPTHEL RAH +LRARRR Sbjct: 38 SPIRDGWIARTHFSDAAATLWLEGELIHLEDLVLHDAGMDVRAPTHELARAHTLLRARRR 97 Query: 70 IATAKPDWALSRTGLASLRGRDGKGDGDEGIEEDIDAPDDAIEGIEEAEPSGSLHDTDPR 129 IA A P WALS GL +LRGR G+ D ED + +D E E S D D Sbjct: 98 IAGAAPGWALSPAGLEALRGRAGEADATHPEVEDPEPVED------EDEASDRSIDDDEA 151 Query: 130 LAAAFAAVDAANANAARTLAGKTRAGL---ERDPLVYDLDWDEDARLDEWRAVVEQTRTL 186 + FA+VDAA A A RTLAG+ ERDPLVYDLDWDEDARL EWRA+V+QTR L Sbjct: 152 FSELFASVDAAIAEADRTLAGERHPAAPSGERDPLVYDLDWDEDARLTEWRAIVDQTRDL 211 Query: 187 PPTLAAAIA-XAWSAIAPLQHTPWLGRLLAASMLCARAKTRWHLPCLQEGLKAIPLERR- 244 PPTLAAA+ AWS I PLQ P LGRLL ++L R K+R HLPCL EG KA+P ERR Sbjct: 212 PPTLAAALVHEAWSTIEPLQRAPGLGRLLTGALLQDRGKSRAHLPCLAEGAKAVPRERRR 271 Query: 245 ------------------GGXGLKNHDRWLTARTLLVRKLDGRRSTSRLPALVDYVFTRP 286 GLK HDRWL ARTLL+RKLDGRRSTSRLP L++ V +RP Sbjct: 272 SRDAATRLVAELEAIAAAAEEGLKQHDRWLLARTLLLRKLDGRRSTSRLPELIELVISRP 331 Query: 287 LVSAGMIA 294 LVSAGMIA Sbjct: 332 LVSAGMIA 339 >ref|YP_571918.1| hypothetical protein Nham_4505 [Nitrobacter hamburgensis X14] gb|ABE65086.1| protein of unknown function DUF1612 [Nitrobacter hamburgensis X14] Length = 404 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 227/322 (70%), Gaps = 34/322 (10%) Query: 6 RPAKSPIRDGWIARTHFSDAAACLWLEGELVHLEDLVLHDAGMDVRAPTHELIRAHAVLR 65 R AKSPIR+GWIARTHF+DAAACLWLEG LVHL+D VLHDAGMDVRAPT EL RAHAVLR Sbjct: 54 RLAKSPIREGWIARTHFTDAAACLWLEGALVHLDDFVLHDAGMDVRAPTFELTRAHAVLR 113 Query: 66 ARRRIATAKPDWALSRTGLASLRG-------RDGKGDGDEGIEEDIDAPDDAIEGIEEAE 118 RRRIA AKPDWALS GLA L G DG GDG+E ++ +D D E AE Sbjct: 114 TRRRIAEAKPDWALSAAGLAGLLGRGGQCDREDGSGDGEEEGDDALDMDGDG--AAETAE 171 Query: 119 PSGSLHDTDPRLAAAFAAVDAANANAARTLAG----KTRAGLERDPLVYDLDWDEDARLD 174 P L D +LA FAAVDAA A A RTLAG + R ER PLVYDLDWDE+ RLD Sbjct: 172 PL-RLTPPDDQLADVFAAVDAAIAQADRTLAGDIATQARRPPERHPLVYDLDWDEEERLD 230 Query: 175 EWRAVVEQTRTLPPTL-AAAIAXAWSAIAPLQHTPWLGRLLAASMLCARAKTRWHLPCLQ 233 WRAV++QTRTLPPTL AA A AWSAI PLQHTPW+GRLLAAS+L R KTR HL CL Sbjct: 231 AWRAVIDQTRTLPPTLAAAIAADAWSAIEPLQHTPWIGRLLAASVLRQRGKTRSHLACLH 290 Query: 234 EGLKAIPLERR-------------------GGXGLKNHDRWLTARTLLVRKLDGRRSTSR 274 +GLKAIP ERR GLK HDRWL ARTLL RKLDGRRSTSR Sbjct: 291 DGLKAIPRERRRPRDSAGRLAVGLEAIAAAAAAGLKEHDRWLMARTLLTRKLDGRRSTSR 350 Query: 275 LPALVDYVFTRPLVSAGMIAGS 296 LPAL++YV TRP+VSAGMIA Sbjct: 351 LPALLEYVLTRPIVSAGMIAAE 372 >ref|YP_001220594.1| hypothetical protein BBta_p0290 [Bradyrhizobium sp. BTAi1] gb|ABQ39922.1| hypothetical protein BBta_p0290 [Bradyrhizobium sp. BTAi1] Length = 358 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 225/318 (70%), Gaps = 29/318 (9%) Query: 6 RPAKSPIRDGWIARTHFSDAAACLWLEGELVHLEDLVLHDAGMDVRAPTHELIRAHAVLR 65 R AKSPIRDGWIARTHF+DA A LWLEGELVHL+DLVLHDAGMDVRAPTHEL AHAVLR Sbjct: 7 RLAKSPIRDGWIARTHFADACASLWLEGELVHLDDLVLHDAGMDVRAPTHELTHAHAVLR 66 Query: 66 ARRRIATAKPDWALSRTGLASLRGRDGKGDGDEGI----EEDIDAPD-DAIEGIEEAEPS 120 ARRRIA AKPDWALS GLA LR R G+G +E EE+ + PD D G +A Sbjct: 67 ARRRIADAKPDWALSAAGLAGLRARGGRGHQEEEACDRNEEESEFPDMDDGHGEADATEP 126 Query: 121 GSLHDTDPRLAAAFAAVDAANANAARTLAGKTR----AGLERDPLVYDLDWDEDARLDEW 176 TD RL FAAVDAA A A RTLA +T ERDPLVYDLDWDED RLD W Sbjct: 127 FRAPPTDQRLVDVFAAVDAAIAQADRTLASETNDRRLKRPERDPLVYDLDWDEDERLDAW 186 Query: 177 RAVVEQTRTLPP-TLAAAIAXAWSAIAPLQHTPWLGRLLAASMLCARAKTRWHLPCLQEG 235 RAVV+QTR LPP AA A AW A+ PLQH+PWLGRLLAA++L AR K R HLPCL +G Sbjct: 187 RAVVDQTRNLPPALAAAIAADAWHALEPLQHSPWLGRLLAAALLRARGKARSHLPCLHDG 246 Query: 236 LKAIPLERR-------------------GGXGLKNHDRWLTARTLLVRKLDGRRSTSRLP 276 LKAIP ERR GLK+HDRWLTARTLL RKL GRRSTSRLP Sbjct: 247 LKAIPRERRRPRDAASRLAVQLGAIAAAAEAGLKDHDRWLTARTLLARKLRGRRSTSRLP 306 Query: 277 ALVDYVFTRPLVSAGMIA 294 AL+DYV TRP+VSAGMIA Sbjct: 307 ALLDYVLTRPVVSAGMIA 324 >ref|YP_003068133.1| hypothetical protein METDI2601 [Methylobacterium extorquens DM4] emb|CAX24253.1| conserved hypothetical protein, DUF1612 family protein [Methylobacterium extorquens DM4] Length = 308 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 173/277 (62%), Positives = 188/277 (67%), Gaps = 33/277 (11%) Query: 48 MDVRAPTHELIRAHAVLRARRRIATAKPDWALSRTGLASLRGRDGKGDGDEGIEEDIDAP 107 MDVRAPTHEL RAHAVLRARRRIA AKP WALS GLA LRGR G+G +E E + Sbjct: 1 MDVRAPTHELTRAHAVLRARRRIAEAKPGWALSAAGLAGLRGRGGRGHQEE---ETCNRN 57 Query: 108 DDAIEGIEEAEPSGSLHDTDP--------RLAAAFAAVDAANANAARTLAGK--TRAGLE 157 +D E E G T+P R+A FA VDAA A A RTLAG +R E Sbjct: 58 EDEGESSEMDHGDGEADATEPFRVAPLDDRMADIFATVDAAIAQADRTLAGDIASRRPPE 117 Query: 158 RDPLVYDLDWDEDARLDEWRAVVEQTRTLPPTLAAAIAX-AWSAIAPLQHTPWLGRLLAA 216 RD LVYDLDWDED RLD WR VV+QTR LPP LAAAIA AWSA+ PLQHTPW+GRLLAA Sbjct: 118 RDSLVYDLDWDEDERLDAWRDVVDQTRILPPALAAAIAADAWSALEPLQHTPWIGRLLAA 177 Query: 217 SMLCARAKTRWHLPCLQEGLKAIPLERR-------------------GGXGLKNHDRWLT 257 S+L R KTRWHL CL +GLKAIP ERR GLK+HDRWLT Sbjct: 178 SVLRQRGKTRWHLSCLHDGLKAIPRERRRPRDSAGRLAVELEATTAAAEAGLKDHDRWLT 237 Query: 258 ARTLLVRKLDGRRSTSRLPALVDYVFTRPLVSAGMIA 294 ARTLL RKLDGRRSTSRLPAL+DYV TRP+VSA MIA Sbjct: 238 ARTLLARKLDGRRSTSRLPALLDYVLTRPIVSASMIA 274