BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0007.p (660 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771793.1| ClpA-like protein [Bradyrhizobium japonicum USD... 941 0.0 gb|AAG17282.1|AF254897_1 ClpA-like protein [Bradyrhizobium japon... 939 0.0 ref|YP_001240704.1| ATP-dependent Clp protease ATP-binding subun... 934 0.0 ref|YP_001206502.1| ATP-dependent specificity subunit of clpA-cl... 932 0.0 ref|YP_533185.1| ATPase [Rhodopseudomonas palustris BisB18] >gi|... 928 0.0 >ref|NP_771793.1| ClpA-like protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50418.1| ClpA-like protein [Bradyrhizobium japonicum USDA 110] Length = 802 Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/472 (98%), Positives = 472/472 (100%) Query: 1 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 60 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG Sbjct: 16 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 75 Query: 61 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 120 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA Sbjct: 76 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 135 Query: 121 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDAKKKGEALETYCVNLNKKARDGKIDP 180 VNYISHGIAKRPGVSEARPVRGVDEETETKG++DAKKKGEALETYCVNLNKKARDGKIDP Sbjct: 136 VNYISHGIAKRPGVSEARPVRGVDEETETKGSDDAKKKGEALETYCVNLNKKARDGKIDP 195 Query: 181 VIGRNAEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLAAATVFS 240 VIGRN+EINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDS+VPEVLAAATVFS Sbjct: 196 VIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSEVPEVLAAATVFS 255 Query: 241 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 300 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL Sbjct: 256 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 315 Query: 301 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 360 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKID+NEPTVEDAIAILKGLKPYFED Sbjct: 316 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDINEPTVEDAIAILKGLKPYFED 375 Query: 361 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAESKRKKTIGIKEIE 420 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAE+KRKKTIGIKEIE Sbjct: 376 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIE 435 Query: 421 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLAQA 472 TTIA+MARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLA+A Sbjct: 436 TTIASMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLARA 487 >gb|AAG17282.1|AF254897_1 ClpA-like protein [Bradyrhizobium japonicum USDA 110] Length = 802 Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/472 (98%), Positives = 471/472 (99%) Query: 1 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 60 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG Sbjct: 16 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 75 Query: 61 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 120 ADDAKPT GFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA Sbjct: 76 ADDAKPTGGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 135 Query: 121 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDAKKKGEALETYCVNLNKKARDGKIDP 180 VNYISHGIAKRPGVSEARPVRGVDEETETKG++DAKKKGEALETYCVNLNKKARDGKIDP Sbjct: 136 VNYISHGIAKRPGVSEARPVRGVDEETETKGSDDAKKKGEALETYCVNLNKKARDGKIDP 195 Query: 181 VIGRNAEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLAAATVFS 240 VIGRN+EINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDS+VPEVLAAATVFS Sbjct: 196 VIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSEVPEVLAAATVFS 255 Query: 241 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 300 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL Sbjct: 256 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 315 Query: 301 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 360 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKID+NEPTVEDAIAILKGLKPYFED Sbjct: 316 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDINEPTVEDAIAILKGLKPYFED 375 Query: 361 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAESKRKKTIGIKEIE 420 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAE+KRKKTIGIKEIE Sbjct: 376 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIE 435 Query: 421 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLAQA 472 TTIA+MARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLA+A Sbjct: 436 TTIASMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLARA 487 >ref|YP_001240704.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bradyrhizobium sp. BTAi1] gb|ABQ36798.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bradyrhizobium sp. BTAi1] Length = 796 Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/472 (97%), Positives = 470/472 (99%) Query: 1 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 60 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLR SLVNYLETEFENLVTDG Sbjct: 16 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRGSLVNYLETEFENLVTDG 75 Query: 61 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 120 +DDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA Sbjct: 76 SDDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 135 Query: 121 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDAKKKGEALETYCVNLNKKARDGKIDP 180 VNYISHGIAKRPGVSEARPVRGVDEETETKGNED+KKKGEALETYCVNLNKKARDGKIDP Sbjct: 136 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDSKKKGEALETYCVNLNKKARDGKIDP 195 Query: 181 VIGRNAEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLAAATVFS 240 VIGRN+EINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVL+AATVFS Sbjct: 196 VIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLSAATVFS 255 Query: 241 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 300 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL Sbjct: 256 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 315 Query: 301 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 360 KPALASG+IRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEP+VEDAIAILKGLKPYFED Sbjct: 316 KPALASGSIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPSVEDAIAILKGLKPYFED 375 Query: 361 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAESKRKKTIGIKEIE 420 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQML+AE+KRKKTIGIKEIE Sbjct: 376 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLLAENKRKKTIGIKEIE 435 Query: 421 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLAQA 472 TTIATMARIPPKSVSKDDAEVLKHLEQTLKR VFGQDKAI+SL+ASIKLA+A Sbjct: 436 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRVVFGQDKAIDSLSASIKLARA 487 >ref|YP_001206502.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Bradyrhizobium sp. ORS 278] emb|CAL78282.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Bradyrhizobium sp. ORS 278] Length = 795 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/472 (97%), Positives = 470/472 (99%) Query: 1 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 60 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLR SLVNYLETEFENLVTDG Sbjct: 16 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRGSLVNYLETEFENLVTDG 75 Query: 61 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 120 +DDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA Sbjct: 76 SDDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 135 Query: 121 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDAKKKGEALETYCVNLNKKARDGKIDP 180 VNYISHGIAKRPGVSEARPVRGVDEETETKGNED+KKKGEALETYCVNLNKKARDGKIDP Sbjct: 136 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDSKKKGEALETYCVNLNKKARDGKIDP 195 Query: 181 VIGRNAEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLAAATVFS 240 VIGRN+EINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDS+VPEVL+AATVFS Sbjct: 196 VIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSEVPEVLSAATVFS 255 Query: 241 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 300 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL Sbjct: 256 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 315 Query: 301 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 360 KPALASG+IRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEP+VEDAIAILKGLKPYFED Sbjct: 316 KPALASGSIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPSVEDAIAILKGLKPYFED 375 Query: 361 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAESKRKKTIGIKEIE 420 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQML+AE+KRKKTIGIKEIE Sbjct: 376 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLLAENKRKKTIGIKEIE 435 Query: 421 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLAQA 472 TTIATMARIPPKSVSKDDAEVLKHLEQTLKR VFGQDKAI+SL+ASIKLA+A Sbjct: 436 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRVVFGQDKAIDSLSASIKLARA 487 >ref|YP_533185.1| ATPase [Rhodopseudomonas palustris BisB18] gb|ABD88866.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodopseudomonas palustris BisB18] Length = 802 Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/472 (96%), Positives = 467/472 (98%) Query: 1 LAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 60 LAIANERHHQYATLEHLLLSL+DDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG Sbjct: 16 LAIANERHHQYATLEHLLLSLVDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDG 75 Query: 61 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 120 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA Sbjct: 76 ADDAKPTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDA 135 Query: 121 VNYISHGIAKRPGVSEARPVRGVDEETETKGNEDAKKKGEALETYCVNLNKKARDGKIDP 180 VNYISHGIAKRPGVSEARPVRGVDEETETKG ED+KKKG+AL+TYCVNLNKKARDGKIDP Sbjct: 136 VNYISHGIAKRPGVSEARPVRGVDEETETKGGEDSKKKGDALDTYCVNLNKKARDGKIDP 195 Query: 181 VIGRNAEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSDVPEVLAAATVFS 240 VIGRN EINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDS+VPEVLAAATVFS Sbjct: 196 VIGRNVEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIVDSEVPEVLAAATVFS 255 Query: 241 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 300 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL Sbjct: 256 LDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLL 315 Query: 301 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 360 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED Sbjct: 316 KPALASGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDVNEPTVEDAIAILKGLKPYFED 375 Query: 361 YHRLKYTNEAIEAAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAESKRKKTIGIKEIE 420 YH+LKYTNEAIE+AVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAE+KRKKTIGIKEIE Sbjct: 376 YHKLKYTNEAIESAVQLSSRYIHDRKLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIE 435 Query: 421 TTIATMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAASIKLAQA 472 T+ATMARIPPKSVSKDDAEVLKHLE TLKR VFGQDKAIE+LAASIKLA+A Sbjct: 436 ATVATMARIPPKSVSKDDAEVLKHLETTLKRVVFGQDKAIEALAASIKLARA 487