BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0220.0005.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771794.1| ATP-dependent Clp protease adaptor protein ClpS...   221   2e-56
sp|Q89JW5.2|CLPS2_BRAJA RecName: Full=ATP-dependent Clp protease...   217   5e-55
ref|YP_001240705.1| ATP-dependent Clp protease adaptor protein C...   215   2e-54
ref|YP_577667.1| ATP-dependent Clp protease adaptor protein ClpS...   214   4e-54
ref|YP_001206503.1| ATP-dependent Clp protease adaptor protein C...   212   1e-53

>ref|NP_771794.1| ATP-dependent Clp protease adaptor protein ClpS [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC50419.1| yljA [Bradyrhizobium japonicum USDA 110]
          Length = 130

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 109/112 (97%)

Query: 7   PKMSNDDNRNGTGSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLERFFNKD 66
           P+MSND+NR+G+ +GP+TSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE+FF KD
Sbjct: 19  PRMSNDENRSGSPTGPNTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKD 78

Query: 67  AEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 118
            EAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct: 79  VEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 130


>sp|Q89JW5.2|CLPS2_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
          Length = 110

 Score =  217 bits (553), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 101/110 (91%), Positives = 107/110 (97%)

Query: 9   MSNDDNRNGTGSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLERFFNKDAE 68
           MSND+NR+G+ +GP+TSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE+FF KD E
Sbjct: 1   MSNDENRSGSPTGPNTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVE 60

Query: 69  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 118
           AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct: 61  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>ref|YP_001240705.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
 gb|ABQ36799.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
          Length = 110

 Score =  215 bits (548), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/110 (91%), Positives = 105/110 (95%)

Query: 9   MSNDDNRNGTGSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLERFFNKDAE 68
           MSN+DN++G   GP TSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE+FFNKD E
Sbjct: 1   MSNNDNKSGGTGGPVTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFNKDVE 60

Query: 69  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 118
           AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct: 61  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>ref|YP_577667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
 gb|ABE63207.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
          Length = 124

 Score =  214 bits (544), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 107/118 (90%)

Query: 1   VAAAPAPKMSNDDNRNGTGSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE 60
           + +APAP+M ND++R      P+ SVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE
Sbjct: 7   IRSAPAPRMGNDEDRTDGRGDPAASVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE 66

Query: 61  RFFNKDAEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 118
           +FF KD EAAT+IMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct: 67  KFFQKDVEAATEIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 124


>ref|YP_001206503.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS 278]
 emb|CAL78283.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS 278]
          Length = 110

 Score =  212 bits (540), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 105/110 (95%)

Query: 9   MSNDDNRNGTGSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLERFFNKDAE 68
           MSN+DN++G   GP+TSVITKVKPKTKRPNLYRVLILNDDYTPMEFVV VLE+FFNKD E
Sbjct: 1   MSNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVE 60

Query: 69  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 118
           AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct: 61  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110