BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0001.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase... 460 e-127 ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase... 454 e-125 ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodo... 443 e-122 ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizo... 441 e-122 ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodo... 440 e-121 >ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1] Length = 590 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/296 (79%), Positives = 253/296 (85%), Gaps = 12/296 (4%) Query: 1 MLRTTLASSRALRVGVLGLVTVTTAILITSDSAEARRHRRHYARHHHSQEARESYSPQFA 60 MLR LASSR +RVGV GL+T+T A ++T DSAEARR RH+ H SYSP FA Sbjct: 1 MLRKNLASSRLMRVGVYGLLTLTMAAVVTVDSAEARRRHRHHHARHSPHNDEGSYSPAFA 60 Query: 61 SIIVDGNTGSVLTATSPDGLRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQD 120 SI+VDGN+G+VLTAT+PD LRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQ Sbjct: 61 SIVVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQS 120 Query: 121 PTKLGLRPGSTIKVEDAIKGLVTRSANDAAVVIAEAIGGSEDDFARMMTRKARALGMSRT 180 PTKLGLRPG TI+VEDAIKGLVTRSANDAAVVIAEAIGG ED+FA+MMTRKARALGMSRT Sbjct: 121 PTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALGMSRT 180 Query: 181 VYRNASGLPNDEQVTTARDQSTLGRAIQDRFPRYYRYFSTSVFNFRGQSIRNHNHLLGNV 240 Y NASGLP DEQ+TTARDQS LGRAIQDRFPRYYRYFST VFN+RGQSIRNHNHLLGNV Sbjct: 181 TYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGNV 240 Query: 241 EGVDGIKTGYTRASGFNLVTSMRRX------------SGGSRDAIMRNLLAENVGK 284 EG+DGIKTGYTRASGFN+VTS+RR SGGSRDAIMRNLLAEN+ K Sbjct: 241 EGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 296 >ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS 278] emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS 278] Length = 586 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 237/297 (79%), Positives = 257/297 (86%), Gaps = 15/297 (5%) Query: 1 MLRTTLASSRALRVGVLGLVTVTTAILITSDSAEARRHRRHYARHH-HSQEARESYSPQF 59 MLR LASSR LRVGV GL+T+ A ++T DSAEARRH RH+ARH H+ E SYSP F Sbjct: 1 MLRKNLASSRLLRVGVSGLITLAVAAVVTVDSAEARRHHRHHARHSPHNDEG--SYSPAF 58 Query: 60 ASIIVDGNTGSVLTATSPDGLRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQ 119 ASI+VDGN+G+ LTAT+PD LRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQ Sbjct: 59 ASIVVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQ 118 Query: 120 DPTKLGLRPGSTIKVEDAIKGLVTRSANDAAVVIAEAIGGSEDDFARMMTRKARALGMSR 179 PTKLGLRPG TI+VEDAIKGLVTRSANDAAVVIAEAIGG ED+FA+MMTRKAR+LGMSR Sbjct: 119 SPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLGMSR 178 Query: 180 TVYRNASGLPNDEQVTTARDQSTLGRAIQDRFPRYYRYFSTSVFNFRGQSIRNHNHLLGN 239 T Y NASGLP DEQ+TTARDQS LGRAIQDRFPRYYRYFST VFN+RGQSIRNHNHLLGN Sbjct: 179 TTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGN 238 Query: 240 VEGVDGIKTGYTRASGFNLVTSMRRX------------SGGSRDAIMRNLLAENVGK 284 VEG+DGIKTGYTRASGFN+VTS+RR SGGSRDAIMRNLLAEN+ K Sbjct: 239 VEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 295 >ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 588 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/293 (75%), Positives = 250/293 (85%), Gaps = 16/293 (5%) Query: 9 SRALRVGVLGLVTVTTAILITSDSAEARRHR-RHYARHHHSQEARESYSPQFASIIVDGN 67 SRALRV VLGL TVT A++ T+DSA+ARRHR R + RHH A ESY+P FASIIVDGN Sbjct: 8 SRALRVCVLGLATVTAAVIYTTDSADARRHRSRPHVRHH---VATESYNPAFASIIVDGN 64 Query: 68 TGSVLTATSPDGLRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQDPTKLGLR 127 +G +LTA +PDGLRHPASLTKIMTLYLLFERL+SGKM+LD+EM VSEHAS Q PTKLGLR Sbjct: 65 SGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSEMDVSEHASIQAPTKLGLR 124 Query: 128 PGSTIKVEDAIKGLVTRSANDAAVVIAEAIGGSEDDFARMMTRKARALGMSRTVYRNASG 187 PG TI+VEDAIK LVTRSANDAAVVI+EAI G E DFA++MT+KAR+LGM+RTVYRNASG Sbjct: 125 PGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMTKKARSLGMTRTVYRNASG 184 Query: 188 LPNDEQVTTARDQSTLGRAIQDRFPRYYRYFSTSVFNFRGQSIRNHNHLLGNVEGVDGIK 247 LP+D+QVTTARDQ+TLGRA+Q+RFPRYYR+FSTSVFN+RG +IRNHN LLG+VEGVDGIK Sbjct: 185 LPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNAIRNHNRLLGSVEGVDGIK 244 Query: 248 TGYTRASGFNLVTSMRR------------XSGGSRDAIMRNLLAENVGKAPGR 288 TGYTRASGFNLVTSM R SGGSRDAIMRNLLA N+ KA R Sbjct: 245 TGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNLLAANLDKASTR 297 >ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA 110] dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110] Length = 611 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/296 (79%), Positives = 262/296 (88%), Gaps = 12/296 (4%) Query: 1 MLRTTLASSRALRVGVLGLVTVTTAILITSDSAEARRHRRHYARHHHSQEARESYSPQFA 60 MLR L+SSR RVGV GL+TVTTA++ T+D+AEARRHRRHYA H ++ ES SP+FA Sbjct: 1 MLRKNLSSSRLARVGVFGLLTVTTAVIFTTDAAEARRHRRHYAHHRVQRDVSESSSPKFA 60 Query: 61 SIIVDGNTGSVLTATSPDGLRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQD 120 SIIVDGN+GSVL ATSPDG+RHPASLTKIMTLYLLFERL+SGKMKLDTEMPVS+HA++QD Sbjct: 61 SIIVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEMPVSQHAADQD 120 Query: 121 PTKLGLRPGSTIKVEDAIKGLVTRSANDAAVVIAEAIGGSEDDFARMMTRKARALGMSRT 180 PTKL LR G TI+VEDAIKGLVTRSANDAAVVIAEAI G EDDFA+MMTRKAR+LGMS+T Sbjct: 121 PTKLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTRKARSLGMSKT 180 Query: 181 VYRNASGLPNDEQVTTARDQSTLGRAIQDRFPRYYRYFSTSVFNFRGQSIRNHNHLLGNV 240 VYRNA+GLPNDEQVTTARDQ+TLGRAIQ+RFPRYYRYF+TS FN+RGQSIRNHNHLLG+V Sbjct: 181 VYRNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSIRNHNHLLGSV 240 Query: 241 EGVDGIKTGYTRASGFNLVTSMRR------------XSGGSRDAIMRNLLAENVGK 284 EGVDGIKTGYTRASGFNLVTSMRR SGGSRDAIMRNLLAEN+ K Sbjct: 241 EGVDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLLAENLDK 296 >ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas palustris CGA009] Length = 585 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/296 (76%), Positives = 252/296 (85%), Gaps = 14/296 (4%) Query: 1 MLRTTLASSRALRVGVLGLVTVTTAILITSDSAEARRHRRHYARHHHSQEARESYSPQFA 60 M R SSRALRV VLGL T++ A++ T+D+A+AR+ RH+ HH + R SY+P FA Sbjct: 1 MHRNISFSSRALRVCVLGLATISAAVIFTTDTADARKRHRHHHTRHHVE--RNSYNPAFA 58 Query: 61 SIIVDGNTGSVLTATSPDGLRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQD 120 SIIVDGNTG+VLTAT+PD LRHPASLTKIMTLYLLFE+L+ GK+ LD+EM VSEHASEQ Sbjct: 59 SIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHASEQA 118 Query: 121 PTKLGLRPGSTIKVEDAIKGLVTRSANDAAVVIAEAIGGSEDDFARMMTRKARALGMSRT 180 PTKLGLRPGST++VEDAIKGLVTRSANDAAVVIAE +GGSE DFA++MTRKARALGMSRT Sbjct: 119 PTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALGMSRT 178 Query: 181 VYRNASGLPNDEQVTTARDQSTLGRAIQDRFPRYYRYFSTSVFNFRGQSIRNHNHLLGNV 240 VYRNASGLPNDEQVTTARDQS LGRAIQDRFPRYYRYF+TSVFN+RG +IRNHN LLGNV Sbjct: 179 VYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRLLGNV 238 Query: 241 EGVDGIKTGYTRASGFNLVTSMRR------------XSGGSRDAIMRNLLAENVGK 284 EGVDGIKTGYTRASGFNLVTSM R SGGSRDAIMRNLLAEN+ K Sbjct: 239 EGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 294