BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0043.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...   147   7e-34
ref|YP_571617.1| PRC-barrel [Nitrobacter hamburgensis X14] >gi|9...   139   2e-31
ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium ja...   135   2e-30
ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacte...   134   6e-30
ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobi...   132   1e-29

>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 79/94 (84%)

Query: 1   VYGSDRSRIGSIERVMIDKVSGKVAYAVLGFGGFLGIGDDHYPLPWHSLKFDTGLGGYAT 60
           VYG+D  RIG+IERVMIDK+SG+V+YAVL FGGFLG+G+DHYPLPW SLK+DT LGGY T
Sbjct: 28  VYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGLGNDHYPLPWPSLKYDTQLGGYVT 87

Query: 61  GITEDRLSSAPKYSDERSWNWSDPAVARSVDDYY 94
            +T+D+L  APKYSDER W+W D A  R VDDYY
Sbjct: 88  AVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYY 121


>ref|YP_571617.1| PRC-barrel [Nitrobacter hamburgensis X14]
 gb|ABE64785.1| PRC-barrel [Nitrobacter hamburgensis X14]
          Length = 133

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 78/94 (82%)

Query: 1   VYGSDRSRIGSIERVMIDKVSGKVAYAVLGFGGFLGIGDDHYPLPWHSLKFDTGLGGYAT 60
           VY ++  ++G+I R+MI+K SG+V YAV+GFGGFLGIGDDHYPLPWHSL +DTGLGGY T
Sbjct: 22  VYDAEDKKVGTIARLMIEKTSGQVVYAVVGFGGFLGIGDDHYPLPWHSLTYDTGLGGYLT 81

Query: 61  GITEDRLSSAPKYSDERSWNWSDPAVARSVDDYY 94
            +T D+L  APKY  E +W+WSDPA +++VD+YY
Sbjct: 82  SVTTDQLKGAPKYDTESNWSWSDPARSKAVDEYY 115


>ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50481.1| bll5216 [Bradyrhizobium japonicum USDA 110]
          Length = 200

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 76/99 (76%), Gaps = 9/99 (9%)

Query: 1   VYGSDRSRIGSIERVMIDKVSGKVAYAVLGFGGFLGIGDDHYPLPWHSLKFDTGLGGYAT 60
           VYG D  ++G +ERVMIDK+SGKV+YAVL FGG LGIGDDHYPLPW +LK+DT LGGY T
Sbjct: 110 VYGVDGEKVGYVERVMIDKISGKVSYAVLSFGGLLGIGDDHYPLPWQALKYDTNLGGYVT 169

Query: 61  GITEDRLSSAPKYSDERSWNWSDPAVARSVDDYYRGIPA 99
           GIT+        Y+DE SWNWSDPA  RSV+ YY G+P 
Sbjct: 170 GITQ--------YADESSWNWSDPATTRSVNAYY-GVPV 199


>ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
 gb|EAQ36646.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
          Length = 170

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 70/84 (83%)

Query: 1   VYGSDRSRIGSIERVMIDKVSGKVAYAVLGFGGFLGIGDDHYPLPWHSLKFDTGLGGYAT 60
           V+G    +IGSIERVMI+K SG+V+YAVL FGGFLGIGDDHYPLPWH+LK+DT LGGY T
Sbjct: 22  VFGPTDEKIGSIERVMIEKTSGRVSYAVLSFGGFLGIGDDHYPLPWHTLKYDTRLGGYRT 81

Query: 61  GITEDRLSSAPKYSDERSWNWSDP 84
           GIT D+L  APKY  E +WNWS+P
Sbjct: 82  GITLDQLQKAPKYQTESNWNWSEP 105


>ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35971.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
          Length = 125

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 79/94 (84%)

Query: 1   VYGSDRSRIGSIERVMIDKVSGKVAYAVLGFGGFLGIGDDHYPLPWHSLKFDTGLGGYAT 60
           VYG+D S+IG+IERVMIDK+SG+V+Y VL FGG LG+G+DHYPLPW SLK+DT LGGY T
Sbjct: 27  VYGADDSKIGTIERVMIDKLSGRVSYVVLAFGGLLGLGNDHYPLPWQSLKYDTRLGGYVT 86

Query: 61  GITEDRLSSAPKYSDERSWNWSDPAVARSVDDYY 94
           G+TE++L  APKYSDER W+W D A  R VDDYY
Sbjct: 87  GVTEEQLRGAPKYSDEREWDWGDLATGRKVDDYY 120