BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0218.0038.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773139.1| amino acid metabolite efflux pump [Bradyrhizobi... 275 2e-72 ref|YP_533110.1| hypothetical protein RPC_3249 [Rhodopseudomonas... 201 2e-50 ref|ZP_08630904.1| DMT superfamily permease [Bradyrhizobiaceae b... 201 3e-50 ref|YP_004109781.1| hypothetical protein Rpdx1_3479 [Rhodopseudo... 186 1e-45 ref|NP_947379.1| DMT family permease [Rhodopseudomonas palustris... 181 3e-44 >ref|NP_773139.1| amino acid metabolite efflux pump [Bradyrhizobium japonicum USDA 110] dbj|BAC51764.1| bll6499 [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 152/171 (88%) Query: 3 IAALGLLMICGTVGYDFSVAAFAIIMICPISFAIGNLLLRQANGAPMFDLFAWLCLSAAV 62 IAA GLLMICGTVGYDFSVAAFA++MI PISFAIGNLLLR A G PMFDLFAWLC+++AV Sbjct: 121 IAAAGLLMICGTVGYDFSVAAFAVLMISPISFAIGNLLLRGARGVPMFDLFAWLCVASAV 180 Query: 63 PLTVLTLITNGPQPTWHALTHMSLTGLVCILCLGGISTSIAYWLWGRLLRDYPAAQVVPF 122 PL VL LI NGP TW +LTHMSLT +C+L LGGISTSIAYWLWGRLLRDYPAAQVVPF Sbjct: 181 PLFVLALIANGPASTWTSLTHMSLTSALCMLMLGGISTSIAYWLWGRLLRDYPAAQVVPF 240 Query: 123 ALLVPFVGSAASSIVFGEAFGRLRLAGMVTVIAGIAVMLLSKRPKAMPKVA 173 ALLVPFVGSAASSIVFGE FG LRLAGM+TVI GIAVM+L++RP+ +PK A Sbjct: 241 ALLVPFVGSAASSIVFGERFGPLRLAGMLTVIGGIAVMVLARRPQILPKTA 291 >ref|YP_533110.1| hypothetical protein RPC_3249 [Rhodopseudomonas palustris BisB18] gb|ABD88791.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisB18] Length = 290 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/171 (57%), Positives = 128/171 (74%) Query: 3 IAALGLLMICGTVGYDFSVAAFAIIMICPISFAIGNLLLRQANGAPMFDLFAWLCLSAAV 62 +A+ GLL+IC TVGYDFSV AFA+ M P++FA+ NLLLRQA PM DLFAW+ L++ Sbjct: 120 VASCGLLLICFTVGYDFSVLAFAVTMTAPLAFALSNLLLRQAREVPMLDLFAWVSLASLP 179 Query: 63 PLTVLTLITNGPQPTWHALTHMSLTGLVCILCLGGISTSIAYWLWGRLLRDYPAAQVVPF 122 PL L+ +GP W ++H+S G+ C+L L ST++ YW+WGRLL Y AAQVVPF Sbjct: 180 PLGAAALVADGPAAIWQQVSHLSPGGIGCVLALSLGSTTLGYWIWGRLLHAYTAAQVVPF 239 Query: 123 ALLVPFVGSAASSIVFGEAFGRLRLAGMVTVIAGIAVMLLSKRPKAMPKVA 173 ALLVPF+G+ AS++VFGE FG LRLAGM+ V+ GIA+ML + R KA+P+VA Sbjct: 240 ALLVPFIGAGASALVFGEQFGTLRLAGMIIVVGGIAIMLFAGRSKALPEVA 290 >ref|ZP_08630904.1| DMT superfamily permease [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06436.1| DMT superfamily permease [Bradyrhizobiaceae bacterium SG-6C] Length = 290 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 105/172 (61%), Positives = 129/172 (75%) Query: 2 AIAALGLLMICGTVGYDFSVAAFAIIMICPISFAIGNLLLRQANGAPMFDLFAWLCLSAA 61 AIA GLLMIC TVGYDFSV AFA+ M P+SFA+ NLLLR+A PM LFAW+ L A Sbjct: 119 AIAMCGLLMICFTVGYDFSVYAFALSMTAPVSFALSNLLLRRAQNVPMLSLFAWISLMAL 178 Query: 62 VPLTVLTLITNGPQPTWHALTHMSLTGLVCILCLGGISTSIAYWLWGRLLRDYPAAQVVP 121 VPL L+ +GP TWH+LTH+S + +L L + T++ YW+WGRLL++Y AAQVVP Sbjct: 179 VPLVTFVLLVDGPSVTWHSLTHLSSGVVASVLALALLGTTLGYWIWGRLLQNYSAAQVVP 238 Query: 122 FALLVPFVGSAASSIVFGEAFGRLRLAGMVTVIAGIAVMLLSKRPKAMPKVA 173 FALLVPF G+ ASSIVFGE FG LRL+GM+ V+ GIAVMLLS+RP + +VA Sbjct: 239 FALLVPFFGAGASSIVFGETFGPLRLSGMIVVVLGIAVMLLSRRPPPLVEVA 290 >ref|YP_004109781.1| hypothetical protein Rpdx1_3479 [Rhodopseudomonas palustris DX-1] gb|ADU45048.1| protein of unknown function DUF6 transmembrane [Rhodopseudomonas palustris DX-1] Length = 291 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/165 (57%), Positives = 119/165 (72%) Query: 3 IAALGLLMICGTVGYDFSVAAFAIIMICPISFAIGNLLLRQANGAPMFDLFAWLCLSAAV 62 +AA GLL+IC TVGYDF+V AF + M PI+FA NLLLR+A G PM DLFAW+ ++ Sbjct: 120 VAACGLLLICFTVGYDFTVLAFTVTMTAPIAFAFSNLLLRRAQGVPMLDLFAWISAASLP 179 Query: 63 PLTVLTLITNGPQPTWHALTHMSLTGLVCILCLGGISTSIAYWLWGRLLRDYPAAQVVPF 122 PL + + +G WH LTH+S + +L L ST+I YW+WGRLL Y AAQVVPF Sbjct: 180 PLALTAWVADGGPAIWHELTHLSPGVMAAMLSLSIGSTTIGYWIWGRLLHAYSAAQVVPF 239 Query: 123 ALLVPFVGSAASSIVFGEAFGRLRLAGMVTVIAGIAVMLLSKRPK 167 ALLVPF+G+ ASS+VFGE FG LRLAGM+ V+AG+A+MLL R K Sbjct: 240 ALLVPFIGAGASSLVFGETFGPLRLAGMLIVVAGLAIMLLFGRAK 284 >ref|NP_947379.1| DMT family permease [Rhodopseudomonas palustris CGA009] emb|CAE27475.1| Permeases of the drug/metabolite transporter (DMT) superfamily [Rhodopseudomonas palustris CGA009] Length = 291 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/172 (56%), Positives = 125/172 (72%), Gaps = 1/172 (0%) Query: 2 AIAALGLLMICGTVGYDFSVAAFAIIMICPISFAIGNLLLRQANGAPMFDLFAWLCLSAA 61 A+AA GLLMIC TVGYDF+V AFA+ M PISFA NLLLR+A PM DLFAW+ L++ Sbjct: 119 AVAACGLLMICLTVGYDFTVLAFAVTMTAPISFAFTNLLLRRARDVPMLDLFAWISLASL 178 Query: 62 VPLTVLTLITNGPQPTWHALTHMSLTGLVCILCLGGISTSIAYWLWGRLLRDYPAAQVVP 121 PL + +++G +LTH+S + +L L ST+I YW+WGRLL Y AAQVVP Sbjct: 179 PPLALAAWVSDGVPAIIQSLTHLSPGVMGAMLALSIGSTTIGYWIWGRLLHAYSAAQVVP 238 Query: 122 FALLVPFVGSAASSIVFGEAFGRLRLAGMVTVIAGIAVMLLSKRPK-AMPKV 172 FALLVPF+G+ ASS+VFGE FG LRLAGM+ V+AG+A+MLL R + +P+V Sbjct: 239 FALLVPFIGAGASSLVFGETFGPLRLAGMLIVVAGLAIMLLFGRARPPLPEV 290