BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0218.0034.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241911.1| hypothetical protein BBta_6078 [Bradyrhizobi... 431 e-119 ref|YP_001207448.1| hypothetical protein BRADO5558 [Bradyrhizobi... 427 e-117 ref|ZP_01044779.1| hypothetical protein NB311A_04594 [Nitrobacte... 296 3e-78 ref|YP_317018.1| hypothetical protein Nwi_0399 [Nitrobacter wino... 293 5e-77 ref|YP_575844.1| hypothetical protein Nham_0494 [Nitrobacter ham... 282 8e-74 >ref|YP_001241911.1| hypothetical protein BBta_6078 [Bradyrhizobium sp. BTAi1] gb|ABQ38005.1| hypothetical protein BBta_6078 [Bradyrhizobium sp. BTAi1] Length = 392 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/367 (57%), Positives = 284/367 (77%), Gaps = 3/367 (0%) Query: 15 PSMAQQASQSIIAELEDAVRDGTSAKRVQTLRQVTDLFLNDGDRLNDEQVKVFDDVLCLL 74 P + SII+ELEDAVR G+S KRV TLRQVT+LFL+DG+RL++EQ+KVFD+VLC+L Sbjct: 26 PEQLPDSEHSIISELEDAVRGGSSEKRVHTLRQVTNLFLHDGERLSEEQIKVFDNVLCML 85 Query: 75 VARVETRARAELSKRLAPLDYAPFEVIQHLAWDDDISVAGDVLTHSSRLSNDALREIASS 134 V+RVETRARAELSK LAP+DYAP +VIQ LA DD+ISVA VL HS+RLS L E+AS+ Sbjct: 86 VSRVETRARAELSKHLAPVDYAPVDVIQRLARDDEISVAESVLMHSTRLSEHTLVEVAST 145 Query: 135 KGQDHLFAISARENLPPSVTDVIIDRGEDKVIRRLAKNASAQFSDNGYSSIVARAEGDDE 194 KGQDHL AIS+R +L +VTD+I+DRGE +VIR+LA N +A+FS+ GYS ++A AE DDE Sbjct: 146 KGQDHLMAISSRPHLTEAVTDIIVDRGERRVIRKLANNQTARFSETGYSGMMAHAEDDDE 205 Query: 195 LVEILGLRIDIPAKLLRDLLQRAKDTVRARLLSIASPRAREEISQVL---NDIAQEEAAA 251 L EI+GLR+D+P K LRDLL+RA D+VR +L++ A P ++EI +VL +D+A+ + Sbjct: 206 LTEIIGLRVDLPNKHLRDLLRRATDSVRTKLMASAPPALQKEIKKVLKTISDVARSDGGL 265 Query: 252 PRRNYGIAEELVKLMKQLNELDDAAVYKFAEEGKLDEVTVALAVLNDMPIAMIERLMLGL 311 R++ +AEE VK MK LNEL+D A+ FAE + EV AL +LN++P M+ +++ G Sbjct: 266 VGRDFTLAEEAVKRMKGLNELNDTAIAFFAETRRFGEVAAALGLLNNVPTEMMAKVLEGP 325 Query: 312 RSDLILIPCRSARLNWPTVETILRKRPLPLPLDNATLEIAQRDYRRLSLETAQRTVRFWQ 371 R+D++LIPCR+A L WP V IL RP+ +D+ TL++A+RDY RLSL+TAQRT+RFW Sbjct: 326 RTDIVLIPCRAAGLIWPAVAKILTHRPIKHAIDSETLKLAERDYTRLSLDTAQRTLRFWM 385 Query: 372 LHNRIEK 378 +HN++EK Sbjct: 386 VHNKVEK 392 >ref|YP_001207448.1| hypothetical protein BRADO5558 [Bradyrhizobium sp. ORS 278] emb|CAL79231.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 374 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/367 (56%), Positives = 285/367 (77%), Gaps = 3/367 (0%) Query: 15 PSMAQQASQSIIAELEDAVRDGTSAKRVQTLRQVTDLFLNDGDRLNDEQVKVFDDVLCLL 74 P + SII+ELEDAVR G+S KRV TLRQVT+LFL+DG+RL+++Q+KVFD+VLC+L Sbjct: 8 PEQLPPSEHSIISELEDAVRSGSSEKRVNTLRQVTNLFLHDGERLSEDQIKVFDNVLCML 67 Query: 75 VARVETRARAELSKRLAPLDYAPFEVIQHLAWDDDISVAGDVLTHSSRLSNDALREIASS 134 V+RVETRARAELSK LAP+DYAP +VIQ LA DD+ISVA VL HS+RL+ L E+A++ Sbjct: 68 VSRVETRARAELSKHLAPVDYAPIDVIQQLARDDEISVAESVLMHSTRLTEHTLVEVATT 127 Query: 135 KGQDHLFAISARENLPPSVTDVIIDRGEDKVIRRLAKNASAQFSDNGYSSIVARAEGDDE 194 KGQDHL AIS+R +L +VTD+I+DRGE +VIR+LA N +A+FS+ GYS ++A AE DDE Sbjct: 128 KGQDHLMAISSRPHLTEAVTDIIVDRGERRVIRKLANNQTARFSETGYSGMMAHAEDDDE 187 Query: 195 LVEILGLRIDIPAKLLRDLLQRAKDTVRARLLSIASPRAREEISQVLN---DIAQEEAAA 251 L EI+GLR+D+P+K LRDLL+RA D+VRA+L++ A P ++EI +VL D A+ + Sbjct: 188 LTEIIGLRVDLPSKHLRDLLRRATDSVRAKLMASAPPALQQEIKKVLKGIADAARSDGGL 247 Query: 252 PRRNYGIAEELVKLMKQLNELDDAAVYKFAEEGKLDEVTVALAVLNDMPIAMIERLMLGL 311 R++ +AEE VK MK LNEL+D+A+ FAE + EV AL +LN++P M+ +++ G Sbjct: 248 IGRDFTLAEEAVKRMKGLNELNDSAIGFFAETRRFGEVAAALGLLNNVPTEMMAKVLEGP 307 Query: 312 RSDLILIPCRSARLNWPTVETILRKRPLPLPLDNATLEIAQRDYRRLSLETAQRTVRFWQ 371 R+D++LIPCR+A L+W V IL RP+ +D+ TL++A+RDY RLSL+TAQRT+RFW Sbjct: 308 RTDIVLIPCRAAGLSWSVVAKILTHRPIKHAIDSETLKLAERDYGRLSLDTAQRTLRFWM 367 Query: 372 LHNRIEK 378 +HN++EK Sbjct: 368 VHNKVEK 374 >ref|ZP_01044779.1| hypothetical protein NB311A_04594 [Nitrobacter sp. Nb-311A] gb|EAQ37560.1| hypothetical protein NB311A_04594 [Nitrobacter sp. Nb-311A] Length = 377 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 165/365 (45%), Positives = 229/365 (62%), Gaps = 4/365 (1%) Query: 17 MAQQASQSIIAELEDAVRDGTSAKRVQTLRQVTDLFLNDGDRLNDEQVKVFDDVLCLLVA 76 MA+ AS ++IAELE AV+ G+S +R+Q LRQVTDLFL+D DRLN+ Q+ VFDDVL L+ Sbjct: 1 MAEAASTALIAELESAVKGGSSERRLQMLRQVTDLFLSDADRLNENQIGVFDDVLVRLME 60 Query: 77 RVETRARAELSKRLAPLDYAPFEVIQHLAWDDDISVAGDVLTHSSRLSNDALREIASSKG 136 ++E RA A+LS L+ AP E ++ LA+ D SVA VLT S+RLS+ L EIAS +G Sbjct: 61 QMEARALAQLSTHLSGSSLAPKETVRQLAYHQDASVAVPVLTKSARLSDGDLIEIASLRG 120 Query: 137 QDHLFAISARENLPPSVTDVIIDRGEDKVIRRLAKNASAQFSDNGYSSIVARAEGDDELV 196 HL AIS R+ L VTDV++ RG+ +V LAKNA A+FS+ GY+ +V ++ DD L Sbjct: 121 PQHLLAISHRDTLSEGVTDVLLKRGDSRVSHTLAKNAGARFSELGYAVLVESSQKDDTLA 180 Query: 197 EILGLRIDIPAKLLRDLLQRAKDTVRARLLSIASPRAREEISQVLNDIAQEEAA---APR 253 E LGLR+DIP K+LR+LL RA VR RLL A P R I + + ++ A+ AP Sbjct: 181 EKLGLRLDIPLKVLRELLSRASAAVRERLLKAAPPEMRARIQAAIQSVVEQIASPGLAP- 239 Query: 254 RNYGIAEELVKLMKQLNELDDAAVYKFAEEGKLDEVTVALAVLNDMPIAMIERLMLGLRS 313 NY +E +V + + +L D + +FA + + + AL++LN + I IE L+ R Sbjct: 240 VNYAESESMVLALNRAGKLGDQTINRFAIQNEYTHIIAALSLLNSVKIEAIEPLITNPRP 299 Query: 314 DLILIPCRSARLNWPTVETILRKRPLPLPLDNATLEIAQRDYRRLSLETAQRTVRFWQLH 373 D +++ C++ARLNW T ILR RP PL E + + LSL +AQRT+RFW Sbjct: 300 DGLIVACKAARLNWSTTNMILRNRPHCRPLTRQEFESGREVFDALSLSSAQRTIRFWSAR 359 Query: 374 NRIEK 378 +K Sbjct: 360 GSAKK 364 >ref|YP_317018.1| hypothetical protein Nwi_0399 [Nitrobacter winogradskyi Nb-255] gb|ABA03666.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 377 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 4/357 (1%) Query: 17 MAQQASQSIIAELEDAVRDGTSAKRVQTLRQVTDLFLNDGDRLNDEQVKVFDDVLCLLVA 76 MA+ AS ++IAELE AV+ G+S +R+Q LRQVTDLFL+D DRLN+ Q+ VFDDVL L+ Sbjct: 1 MAEAASTALIAELESAVKGGSSERRLQMLRQVTDLFLSDADRLNENQIGVFDDVLVRLME 60 Query: 77 RVETRARAELSKRLAPLDYAPFEVIQHLAWDDDISVAGDVLTHSSRLSNDALREIASSKG 136 ++E RA A+LS L+ AP E ++ LA+ D SVA VL S+RLS L EIAS +G Sbjct: 61 QMEARALAQLSTNLSGSSLAPKETVRQLAYHQDASVAVPVLARSARLSEGDLIEIASLRG 120 Query: 137 QDHLFAISARENLPPSVTDVIIDRGEDKVIRRLAKNASAQFSDNGYSSIVARAEGDDELV 196 HL AIS RE L VTD ++ RG+ +V LA+N A+FS+ GY+ +V +E DD L Sbjct: 121 PQHLLAISHRETLSEGVTDALLKRGDTRVSHTLARNTGARFSERGYAVLVESSEKDDALA 180 Query: 197 EILGLRIDIPAKLLRDLLQRAKDTVRARLLSIASPRAREEISQVLNDIAQEEAAAPRR-- 254 E LGLR+D+P K+LR+LL RA VR RLL +A P R I + + E+ A+P Sbjct: 181 EKLGLRLDVPIKVLRELLSRASAAVRERLLKVAPPEMRARIQAAIQSVV-EQIASPSLAP 239 Query: 255 -NYGIAEELVKLMKQLNELDDAAVYKFAEEGKLDEVTVALAVLNDMPIAMIERLMLGLRS 313 NY +E +V + + +L D + +FA + + + AL++LN + I IE L+ R Sbjct: 240 VNYAESESMVLALNRAGKLGDQTINRFAIQSEYTHIIAALSLLNSVRIEAIEPLLANPRP 299 Query: 314 DLILIPCRSARLNWPTVETILRKRPLPLPLDNATLEIAQRDYRRLSLETAQRTVRFW 370 D +++ C++ARLNW T ILR RP PL E + + LSL +AQRT+RFW Sbjct: 300 DGLIVACKAARLNWSTTHMILRNRPHCRPLTAQEFENGREVFDALSLSSAQRTIRFW 356 >ref|YP_575844.1| hypothetical protein Nham_0494 [Nitrobacter hamburgensis X14] gb|ABE61384.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 377 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 154/357 (43%), Positives = 225/357 (63%), Gaps = 4/357 (1%) Query: 17 MAQQASQSIIAELEDAVRDGTSAKRVQTLRQVTDLFLNDGDRLNDEQVKVFDDVLCLLVA 76 M++ AS ++I ELE AV+ GTS +R+Q LRQVTDLFL+D DRLN+ Q+ VFDDVL L Sbjct: 1 MSETASTALIVELESAVKGGTSERRLQMLRQVTDLFLSDADRLNENQIGVFDDVLVRLTE 60 Query: 77 RVETRARAELSKRLAPLDYAPFEVIQHLAWDDDISVAGDVLTHSSRLSNDALREIASSKG 136 ++E RA A+LS L+ +AP E ++ LA+ ++SVA VL+ S+RLS L IA+ +G Sbjct: 61 QMEARALAQLSTTLSGSSHAPKETVRQLAYHQEVSVAAPVLSKSARLSEGDLIAIANLRG 120 Query: 137 QDHLFAISARENLPPSVTDVIIDRGEDKVIRRLAKNASAQFSDNGYSSIVARAEGDDELV 196 HL AIS+R L VTDV++ RG+ V LA+N A+FS+ GY+++V + DD L Sbjct: 121 PQHLLAISSRNALSEGVTDVLLKRGDSHVSHALARNTGARFSEFGYATLVESSAKDDALA 180 Query: 197 EILGLRIDIPAKLLRDLLQRAKDTVRARLLSIASPRAREEISQVLNDIAQE---EAAAPR 253 E LGLR+DIP K+LR+LL RA VR RLL A P R +I + + + ++ A AP Sbjct: 181 EKLGLRMDIPIKVLRELLSRAGAAVRDRLLKAAPPELRAKIQEAIQSVVEQIVAPALAP- 239 Query: 254 RNYGIAEELVKLMKQLNELDDAAVYKFAEEGKLDEVTVALAVLNDMPIAMIERLMLGLRS 313 +Y +E +V + + +L D + +FA +G+ + AL++L + I IE L+ R Sbjct: 240 IDYTESEAMVLALNRAGKLGDQTINRFATQGEYTHIVAALSLLTSVKIEAIEPLIANPRP 299 Query: 314 DLILIPCRSARLNWPTVETILRKRPLPLPLDNATLEIAQRDYRRLSLETAQRTVRFW 370 D +++ C+++RL+W T ILR RP PL L+ + + LSL +AQRT+RFW Sbjct: 300 DGLIVACKASRLDWSTANMILRNRPHCRPLTRQELDDGREVFDTLSLSSAQRTIRFW 356