BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0032.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08779155.1| protein of unknown function DUF1311 [Methylob...    65   3e-09
ref|YP_973931.1| hypothetical protein Pnap_4780 [Polaromonas nap...    59   2e-07
ref|ZP_06069009.1| conserved hypothetical protein [Acinetobacter...    59   3e-07
ref|YP_003445111.1| protein of unknown function DUF1311 [Allochr...    56   2e-06
ref|ZP_07777494.1| hypothetical protein PFWH6_4931 [Pseudomonas ...    54   6e-06

>ref|ZP_08779155.1| protein of unknown function DUF1311 [Methylobacter tundripaludum
           SV96]
 gb|EGW21330.1| protein of unknown function DUF1311 [Methylobacter tundripaludum
           SV96]
          Length = 132

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 33  KQREQLRTAQRLWIQYRDANC-LYYDLGEGTIARLDVGECMRSMTEARAKELENLGHQ 89
           ++++QL+ AQRLW++YR ANC  YYD   GTIAR+   +C  S T ARAKELE    Q
Sbjct: 74  ERKKQLQEAQRLWLKYRKANCDFYYDPDGGTIARVSANDCFMSATAARAKELEAFKQQ 131


>ref|YP_973931.1| hypothetical protein Pnap_4780 [Polaromonas naphthalenivorans CJ2]
 gb|ABM40189.1| protein of unknown function DUF1311 [Polaromonas naphthalenivorans
           CJ2]
          Length = 133

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 34  QREQLRTAQRLWIQYRDANCLYYDLGE-GTIARLDVGECMRSMTEARAKELENL 86
           ++ QL+ AQR WI+YRDANC +YD  + GT+AR++   CM + T  RA+ELE+ 
Sbjct: 78  RKTQLQEAQRAWIKYRDANCAFYDDPDGGTLARVNANSCMMAATADRARELESF 131


>ref|ZP_06069009.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gb|EEY90511.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 131

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 33  KQREQLRTAQRLWIQYRDANCLYY-DLGEGTIARLDVGECMRSMTEARAKELENL 86
            +++QL+  QRLWI+YRDANC +Y D   GTIA ++   C    T ARA ELENL
Sbjct: 73  NRKKQLQEVQRLWIRYRDANCDFYADPNGGTIATVNSNSCYMEATAARATELENL 127


>ref|YP_003445111.1| protein of unknown function DUF1311 [Allochromatium vinosum DSM
           180]
 gb|ADC64079.1| protein of unknown function DUF1311 [Allochromatium vinosum DSM
           180]
          Length = 131

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 33  KQREQLRTAQRLWIQYRDANC-LYYDLGEGTIARLDVGECMRSMTEARAKELENLG 87
           ++R+ L++AQRLWIQYRDANC  Y D   GT+ R+   +C+   T  RAKELE L 
Sbjct: 71  ERRKALQSAQRLWIQYRDANCDFYLDPEGGTLHRVMAADCVLRETAERAKELEGLA 126


>ref|ZP_07777494.1| hypothetical protein PFWH6_4931 [Pseudomonas fluorescens WH6]
 gb|EFQ61372.1| hypothetical protein PFWH6_4931 [Pseudomonas fluorescens WH6]
          Length = 126

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 23  HRGGTHAADDKQREQLRTAQRLWIQYRDANCLYYDLGE-GTIARLDVGECMRSMTEARAK 81
           ++    A +  +++QL+  QRLWI+YRDANC +      GTI +++   C+  MT+ARA+
Sbjct: 59  YQTALAAQEGNRKQQLQDVQRLWIKYRDANCQFIGSATGGTIDQVNGTGCVLDMTQARAQ 118

Query: 82  ELENL 86
           ELE+L
Sbjct: 119 ELEDL 123