BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0218.0006.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628721.1| YrdC/Sua5 family protein [Bradyrhizobiaceae b... 407 e-111 ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopse... 383 e-104 ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter ham... 382 e-104 ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. ... 380 e-103 ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris... 380 e-103 >ref|ZP_08628721.1| YrdC/Sua5 family protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08526.1| YrdC/Sua5 family protein [Bradyrhizobiaceae bacterium SG-6C] Length = 360 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/299 (70%), Positives = 240/299 (80%), Gaps = 2/299 (0%) Query: 1 VAFPTETVYGLGADAGNAAAIARLYQAKGRPAFNPLIAHVADLGAARRIALFNGQALRLA 60 VAFPTETVYGLGADA NA A+A+LY+AKGRPAFNPLIAHV+DL AAR+IA F+ +LRLA Sbjct: 61 VAFPTETVYGLGADATNARAVAQLYEAKGRPAFNPLIAHVSDLQAARKIARFDETSLRLA 120 Query: 61 EAFWPGPLTLVLPKALSCPVAELATAGLDTVAIRIPAHKVARDIIKAFGGAVVAPSANLS 120 EAFWPGPLTLVLPKA CPV++LATAGL+T+A+R+PAH VARDI++AFG VVAPSAN+S Sbjct: 121 EAFWPGPLTLVLPKATGCPVSDLATAGLETIAVRVPAHPVARDILRAFGKPVVAPSANIS 180 Query: 121 GHVSPTTAEHVNGDLAGRIDLIVDGGPVEVGVESTIVGCFSDPVLLRPGGLTRAEIERVL 180 GHVSPTTAEHV GDLAGRIDLIVDGGPV VGVESTIVGCF P+LLRPGGL R +IERVL Sbjct: 181 GHVSPTTAEHVLGDLAGRIDLIVDGGPVSVGVESTIVGCFETPLLLRPGGLPREDIERVL 240 Query: 181 GQPLQSPPQDAET-DAQPVAPGMLASHYAPRTPVRLNASDVHVGEALLAFGPAKVAGRTQ 239 G L P+D T D+QP+APGMLASHYAPRT VRLNA + GEALLAFGP + G Sbjct: 241 GDKLARMPEDTGTADSQPLAPGMLASHYAPRTHVRLNAQTLDTGEALLAFGPQHLPGSEH 300 Query: 240 RMRLRGDEPVR-ARRPGRLFGYLRTLDKRNADAIAVTPIPEEGLGEAINDRLRRAAVGR 297 + E LFGYLR LD ++ AIAV PIP EGLGEAINDRL+RAA+ R Sbjct: 301 ATVMNLSEAGDLVEAAANLFGYLRDLDAKSPRAIAVMPIPHEGLGEAINDRLQRAAIPR 359 >ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] gb|ACE99806.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] Length = 326 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/302 (69%), Positives = 228/302 (75%), Gaps = 8/302 (2%) Query: 1 VAFPTETVYGLGADAGNAAAIARLYQAKGRPAFNPLIAHVADLGAARRIALFNGQALRLA 60 VAFPTETVYGLGADA NA A+ARLY AKGRP+FNPLIAHVADL AAR IA F+ ALRLA Sbjct: 27 VAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDAAALRLA 86 Query: 61 EAFWPGPLTLVLPKALSCPVAELATAGLDTVAIRIPAHKVARDIIKAFGGAVVAPSANLS 120 EAFWPGPLTLVLPK C V +LATAGLD+VAIRIP+H VA+ +++AFGG VVAPSAN S Sbjct: 87 EAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFGGPVVAPSANRS 146 Query: 121 GHVSPTTAEHVNGDLAGRIDLIVDGGPVEVGVESTIVGCFSDPVLLRPGGLTRAEIERVL 180 GHVSPTTA HV DL GRID+IVDGGPV VGVESTIV C PVLLRPGGL R IERVL Sbjct: 147 GHVSPTTAAHVASDLDGRIDVIVDGGPVMVGVESTIVSCLGAPVLLRPGGLPREAIERVL 206 Query: 181 GQPLQSPPQDAETDAQPVAPGMLASHYAPRTPVRLNASDVHVGEALLAFGP-----AKVA 235 GQ L +P + D P+APGMLASHYAPR VRLNA++V GEALLAFGP A+ A Sbjct: 207 GQALGTPTTNNADDHAPLAPGMLASHYAPRALVRLNATEVKPGEALLAFGPELPPGAETA 266 Query: 236 GRTQRMRLRGDEPVRARRPGRLFGYLRTLDKRNADAIAVTPIPEEGLGEAINDRLRRAAV 295 + RGD P A LFG LR LD R A IAV PIP GLGEAINDRLRRAA Sbjct: 267 AAVHNLSPRGDLPEAA---AHLFGALRALDDRGARGIAVMPIPFHGLGEAINDRLRRAAA 323 Query: 296 GR 297 R Sbjct: 324 PR 325 >ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter hamburgensis X14] gb|ABE64678.1| translation factor SUA5 [Nitrobacter hamburgensis X14] Length = 328 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/299 (71%), Positives = 234/299 (78%), Gaps = 9/299 (3%) Query: 1 VAFPTETVYGLGADAGNAAAIARLYQAKGRPAFNPLIAHVADLGAARRIALFNGQALRLA 60 VAFPTETVYGLGADA NA A+ARLY+AKGRPAFNPLIAHV DL AA+RIA F+ AL LA Sbjct: 30 VAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVGDLAAAQRIARFDATALALA 89 Query: 61 EAFWPGPLTLVLPKALSCPVAELATAGLDTVAIRIPAHKVARDIIKAFGGAVVAPSANLS 120 AFWPGPLTLVLPKA CPVA+LATAGLDT+A+R+PAH VARDI++ FGGAVVAPSANLS Sbjct: 90 SAFWPGPLTLVLPKAPRCPVADLATAGLDTIALRVPAHPVARDILRGFGGAVVAPSANLS 149 Query: 121 GHVSPTTAEHVNGDLAGRIDLIVDGGPVEVGVESTIVGCFSDPVLLRPGGLTRAEIERVL 180 GHVSPTTA HV DLAGRIDLIVDGGPVEVGVESTIVGCF P LLRPGG+ RA+IERVL Sbjct: 150 GHVSPTTAAHVQSDLAGRIDLIVDGGPVEVGVESTIVGCFESPTLLRPGGIPRADIERVL 209 Query: 181 GQPLQSPPQDAETDAQPVAPGMLASHYAPRTPVRLNASDVHVGEALLAFGPAKVAG---- 236 G L +P D QP+A GMLASHYAPR VRLNA+ + GEALLAFGP +AG Sbjct: 210 GSAL-APHYPGAADGQPLASGMLASHYAPRARVRLNAASLTRGEALLAFGPVDLAGIDTA 268 Query: 237 -RTQRMRLRGDEPVRARRPGRLFGYLRTLDKRNADAIAVTPIPEEGLGEAINDRLRRAA 294 + RGD A LFGYLR LD A IAV P+P++GLGEAINDRLRRAA Sbjct: 269 AAVMNLSERGDLKEAA---ANLFGYLRALDASGARTIAVMPVPDDGLGEAINDRLRRAA 324 >ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] gb|ABQ34556.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] Length = 333 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/300 (68%), Positives = 230/300 (76%), Gaps = 3/300 (1%) Query: 1 VAFPTETVYGLGADAGNAAAIARLYQAKGRPAFNPLIAHVADLGAARRIALFNGQALRLA 60 VAFPTETVYGLGADA NAAAI RLYQAKGRPAFNPLIAHVAD+ AARRI F+ A RLA Sbjct: 34 VAFPTETVYGLGADASNAAAITRLYQAKGRPAFNPLIAHVADVAAARRIGRFDAVAERLA 93 Query: 61 EAFWPGPLTLVLPKALSCPVAELATAGLDTVAIRIPAHKVARDIIKAFGGAVVAPSANLS 120 +AFWPGPLTLVLP+A CPVA+LATAGLDTVAIR+PAH VAR ++ AFGGAVVAPSAN+S Sbjct: 94 QAFWPGPLTLVLPQAEGCPVADLATAGLDTVAIRVPAHPVARALLAAFGGAVVAPSANIS 153 Query: 121 GHVSPTTAEHVNGDLAGRIDLIVDGGPVEVGVESTIVGCFSDPVLLRPGGLTRAEIERVL 180 GHVSPT A HV DL GRIDLI+DGG VEVGVESTI+GCF +P LLRPGG+ R IE VL Sbjct: 154 GHVSPTMAAHVAADLDGRIDLILDGGAVEVGVESTIIGCFDEPTLLRPGGVPREAIEAVL 213 Query: 181 GQPLQSPPQDAETDA-QPVAPGMLASHYAPRTPVRLNASDVHVGEALLAFGPAKVAGRTQ 239 G+PL + QP+APGMLASHYAPR VRL A++V EALLAFGP + G Sbjct: 214 GRPLARAAAAEAQASEQPLAPGMLASHYAPRAAVRLAATEVAPDEALLAFGPVAIPGAAD 273 Query: 240 RMRLRGDEPV--RARRPGRLFGYLRTLDKRNADAIAVTPIPEEGLGEAINDRLRRAAVGR 297 + P A LFGYLR+LD + A +IAV PIP++GLGEAINDRLRRAA R Sbjct: 274 AAAMLNLSPSGDPAEAATHLFGYLRSLDAKGARSIAVMPIPDDGLGEAINDRLRRAAAPR 333 >ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisA53] gb|ABJ08304.1| translation factor SUA5 [Rhodopseudomonas palustris BisA53] Length = 327 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/302 (69%), Positives = 232/302 (76%), Gaps = 10/302 (3%) Query: 1 VAFPTETVYGLGADAGNAAAIARLYQAKGRPAFNPLIAHVADLGAARRIALFNGQALRLA 60 VAFPTETVYGLGADA A A+ARLYQAKGRPAFNPLIAHVADL AA++I F+ ALRLA Sbjct: 30 VAFPTETVYGLGADATQATAVARLYQAKGRPAFNPLIAHVADLAAAQKIGRFDQNALRLA 89 Query: 61 EAFWPGPLTLVLPKALSCPVAELATAGLDTVAIRIPAHKVARDIIKAFGGAVVAPSANLS 120 +AFWPGPLTLV+ KA CPVAELATAGLDT+AIRIPAH VAR I++ G VVAPSAN S Sbjct: 90 QAFWPGPLTLVVQKAAGCPVAELATAGLDTIAIRIPAHAVARAILRGLGRPVVAPSANRS 149 Query: 121 GHVSPTTAEHVNGDLAGRIDLIVDGGPVEVGVESTIVGCFSDPVLLRPGGLTRAEIERVL 180 GHVSPTTA HV GDL GRIDLIVDGGPV VGVESTIVGCF+ PVLLRPGGL R IE VL Sbjct: 150 GHVSPTTAAHVRGDLDGRIDLIVDGGPVTVGVESTIVGCFAKPVLLRPGGLPRQAIEAVL 209 Query: 181 GQPLQSPPQDAETDAQPVAPGMLASHYAPRTPVRLNASDVHVGEALLAFGP-----AKVA 235 G+PL SP + A A+P+APGMLASHYAPR+ VRL+A+ V GEALLAFG A +A Sbjct: 210 GEPLASPGEAA--GAKPLAPGMLASHYAPRSRVRLDATRVEPGEALLAFGSPLPQGADLA 267 Query: 236 GRTQRMRLRGDEPVRARRPGRLFGYLRTLDKRNADAIAVTPIPEEGLGEAINDRLRRAAV 295 + RGD A LFG+LR LD + IAV P+P EGLGEAINDRL RAAV Sbjct: 268 ATVLNLSARGDLTEAA---ANLFGHLRALDGASPRGIAVMPVPHEGLGEAINDRLARAAV 324 Query: 296 GR 297 R Sbjct: 325 PR 326