BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0035.p (496 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774447.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobi... 920 0.0 ref|YP_001242912.1| long-chain-fatty-acid--CoA ligase [Bradyrhiz... 886 0.0 ref|YP_001203083.1| long-chain-fatty-acid--CoA ligase [Bradyrhiz... 880 0.0 ref|YP_570736.1| long-chain-fatty-acid--CoA ligase [Rhodopseudom... 875 0.0 ref|YP_485300.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 868 0.0 >ref|NP_774447.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC53072.1| blr7807 [Bradyrhizobium japonicum USDA 110] Length = 550 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/495 (87%), Positives = 464/495 (93%) Query: 1 MAGSGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRSGLYYT 60 MAG+GKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFME+CWAAQRSGLYYT Sbjct: 55 MAGTGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMELCWAAQRSGLYYT 114 Query: 61 AISRYLTEEEIAYIIKDCGAKVFITTPQCADKVKGLIKGEPGEPLFYMMDEPAPGFRSYD 120 AISRYL ++EI YII DCGAKV ITTP+CAD++K LIKG PGEP+FYMMDEP PGFRSYD Sbjct: 115 AISRYLKQDEIDYIIADCGAKVVITTPKCADQIKALIKGTPGEPVFYMMDEPLPGFRSYD 174 Query: 121 KEAGAQPTTPVAHEVAGYDMLYSSGTTGRPKGIKREFEGNRIDVPNPFLRILTADMCGMN 180 KEA AQPTTP++ EVAGYDMLYSSGTTGRPKGIK+ FEGN+IDVPN FLR+L ADMCGMN Sbjct: 175 KEAAAQPTTPISDEVAGYDMLYSSGTTGRPKGIKKAFEGNKIDVPNAFLRVLCADMCGMN 234 Query: 181 ADSIYLSPAPLYHAAPLRFNMMAIVLGGTSVIMEHFDAEEFLKQVEKHKVTQSQLVPTMF 240 A S YLSPAPLYHAAPLRFNMMAIVLGGTS+IMEHFDAEEFLK VEK++VTQSQLVPTMF Sbjct: 235 AASTYLSPAPLYHAAPLRFNMMAIVLGGTSIIMEHFDAEEFLKLVEKYEVTQSQLVPTMF 294 Query: 241 VRMLKLPDEVRARYKVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 300 VRMLKLPDEVR RY VS+LKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTV Sbjct: 295 VRMLKLPDEVRYRYNVSTLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVC 354 Query: 301 TSQQWLTHRGTVGRAVVGKVKILDENDEEAPTGQIGQVYFADAPAFSYHNDPEKTKRAYN 360 SQQWL HRG+VGRAVVGK+KILDENDEE PTG+IG VYFADAPAF+YHNDPEKTK+AYN Sbjct: 355 NSQQWLEHRGSVGRAVVGKIKILDENDEEQPTGEIGTVYFADAPAFAYHNDPEKTKKAYN 414 Query: 361 AKGWSTLGDVGYLDEEGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPAVSDVAVFGVP 420 AKGWSTLGDVGYLD++GFL+LTDRKSYMIISGGVNIYPQETEDVLITHP V+DVAVFGVP Sbjct: 415 AKGWSTLGDVGYLDKDGFLFLTDRKSYMIISGGVNIYPQETEDVLITHPDVADVAVFGVP 474 Query: 421 NEEMGEEVKAVVQPHDIARAGKELEAELIAFCRQHLSPIKCPKSIDFEQDLPRTPTGKLV 480 NEEMGEEVKAVVQPHD+ RAGK LEA+LIAFC+ LS IKCP+SIDFE +LPRTPTGKLV Sbjct: 475 NEEMGEEVKAVVQPHDMTRAGKALEADLIAFCKGRLSAIKCPRSIDFEAELPRTPTGKLV 534 Query: 481 KRHLRDRYWPKAPAR 495 KRHLRDRYWPK A+ Sbjct: 535 KRHLRDRYWPKTTAK 549 >ref|YP_001242912.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ39006.1| putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) [Bradyrhizobium sp. BTAi1] Length = 512 Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/494 (84%), Positives = 459/494 (92%), Gaps = 1/494 (0%) Query: 1 MAGSGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRSGLYYT 60 MA +GKAITYRELDELSNQGA LFR+LGLKAGDHIA LMENRLAFMEI WAAQRSGLYYT Sbjct: 19 MAATGKAITYRELDELSNQGAQLFRALGLKAGDHIAFLMENRLAFMEIAWAAQRSGLYYT 78 Query: 61 AISRYLTEEEIAYIIKDCGAKVFITTPQCADKVKGLIKGEPGEPLFYMMDEPAPGFRSYD 120 AISRYLT++EIAYIIKDCGAKVFIT+P+CA++V+ L+ G P+F+M+DEP PGFRS+D Sbjct: 79 AISRYLTKDEIAYIIKDCGAKVFITSPKCAEQVRDLVTAADG-PMFFMVDEPEPGFRSWD 137 Query: 121 KEAGAQPTTPVAHEVAGYDMLYSSGTTGRPKGIKREFEGNRIDVPNPFLRILTADMCGMN 180 KEAGAQP TP+A +VAGYDMLYSSGTTGRPKGIK++FEGN I+ PN FLR+L ADMCGMN Sbjct: 138 KEAGAQPKTPIADQVAGYDMLYSSGTTGRPKGIKKDFEGNPIEAPNQFLRVLCADMCGMN 197 Query: 181 ADSIYLSPAPLYHAAPLRFNMMAIVLGGTSVIMEHFDAEEFLKQVEKHKVTQSQLVPTMF 240 A+SIYLSPAPLYHAAPLRFNMMAIVLGGTS+IMEHFDAE+FL+ VEK+KVTQSQLVPTMF Sbjct: 198 AESIYLSPAPLYHAAPLRFNMMAIVLGGTSIIMEHFDAEDFLRLVEKYKVTQSQLVPTMF 257 Query: 241 VRMLKLPDEVRARYKVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 300 VRMLKLPD+VR RY VS+LKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTV Sbjct: 258 VRMLKLPDDVRRRYDVSTLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVC 317 Query: 301 TSQQWLTHRGTVGRAVVGKVKILDENDEEAPTGQIGQVYFADAPAFSYHNDPEKTKRAYN 360 TS+QWL HRG+VGRAVVGK+KIL E+D+E PTG+IG VYFADAP FSYHNDPEKTKRAYN Sbjct: 318 TSKQWLEHRGSVGRAVVGKIKILGEDDKELPTGEIGSVYFADAPVFSYHNDPEKTKRAYN 377 Query: 361 AKGWSTLGDVGYLDEEGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPAVSDVAVFGVP 420 KGWSTLGDVGYLD +GFLYLTDRKSYMIISGGVNIYPQETEDVLITHP V+DVAVFGVP Sbjct: 378 DKGWSTLGDVGYLDADGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPDVADVAVFGVP 437 Query: 421 NEEMGEEVKAVVQPHDIARAGKELEAELIAFCRQHLSPIKCPKSIDFEQDLPRTPTGKLV 480 NEEMGEEVKAVVQPHD++RAGK LE +LI FCRQHLSPIKCP+SIDFE +LPRTPTGKLV Sbjct: 438 NEEMGEEVKAVVQPHDMSRAGKALEEQLILFCRQHLSPIKCPRSIDFEPELPRTPTGKLV 497 Query: 481 KRHLRDRYWPKAPA 494 KRHLR+RYWPK A Sbjct: 498 KRHLRERYWPKKGA 511 >ref|YP_001203083.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL74846.1| putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) [Bradyrhizobium sp. ORS 278] Length = 511 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/494 (83%), Positives = 458/494 (92%), Gaps = 2/494 (0%) Query: 1 MAGSGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRSGLYYT 60 MAG+GKAITYRELDELSNQGA LFR+LGLKAGDH+A LMENRLAFMEI WAAQRSGLYYT Sbjct: 19 MAGTGKAITYRELDELSNQGAQLFRALGLKAGDHVAFLMENRLAFMEIAWAAQRSGLYYT 78 Query: 61 AISRYLTEEEIAYIIKDCGAKVFITTPQCADKVKGLIKGEPGEPLFYMMDEPAPGFRSYD 120 AISRYLT++EIAYI++DCGAKVFIT+P+CA++V+ L+ + PLF+M+DEP PGFRS+D Sbjct: 79 AISRYLTKDEIAYIVRDCGAKVFITSPKCAEQVRDLVAAD--GPLFFMVDEPEPGFRSWD 136 Query: 121 KEAGAQPTTPVAHEVAGYDMLYSSGTTGRPKGIKREFEGNRIDVPNPFLRILTADMCGMN 180 KEAGAQP TP+A +VAGYDMLYSSGTTGRPKGIK++FEGN ID PN FLR+L ADMCGMN Sbjct: 137 KEAGAQPKTPIADQVAGYDMLYSSGTTGRPKGIKKDFEGNPIDQPNQFLRVLCADMCGMN 196 Query: 181 ADSIYLSPAPLYHAAPLRFNMMAIVLGGTSVIMEHFDAEEFLKQVEKHKVTQSQLVPTMF 240 A+SIYLSPAPLYHAAPLRFNMMAI LGGTS+IMEHFDAEEFLK VEK+K+TQSQLVPTMF Sbjct: 197 AESIYLSPAPLYHAAPLRFNMMAITLGGTSIIMEHFDAEEFLKLVEKYKITQSQLVPTMF 256 Query: 241 VRMLKLPDEVRARYKVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 300 VRMLKLP++VR RY VS+LKGAIHAAAPCPVDVKA+MIEWWGPILIEYYAGSEGNGVTV Sbjct: 257 VRMLKLPEDVRQRYDVSTLKGAIHAAAPCPVDVKARMIEWWGPILIEYYAGSEGNGVTVC 316 Query: 301 TSQQWLTHRGTVGRAVVGKVKILDENDEEAPTGQIGQVYFADAPAFSYHNDPEKTKRAYN 360 S+QWL HRG+VGRAVVGK+KIL E+D+E PTG+IG VYFADAP FSYHNDPEKTKRAYN Sbjct: 317 NSKQWLEHRGSVGRAVVGKIKILGEDDQEMPTGEIGTVYFADAPVFSYHNDPEKTKRAYN 376 Query: 361 AKGWSTLGDVGYLDEEGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPAVSDVAVFGVP 420 KGWSTLGDVGYLD +GFLYLTDRKSYMIISGGVNIYPQETEDVLITHP V+DVAVFGVP Sbjct: 377 DKGWSTLGDVGYLDADGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPDVADVAVFGVP 436 Query: 421 NEEMGEEVKAVVQPHDIARAGKELEAELIAFCRQHLSPIKCPKSIDFEQDLPRTPTGKLV 480 NEEMGEEVKAVVQPHD+ARAGK LE +LI +CR+HLSP+KCP+SIDFE +LPRTPTGKLV Sbjct: 437 NEEMGEEVKAVVQPHDMARAGKALEEQLILYCRKHLSPLKCPRSIDFEPELPRTPTGKLV 496 Query: 481 KRHLRDRYWPKAPA 494 KRHLR+RYWPK A Sbjct: 497 KRHLRERYWPKKGA 510 >ref|YP_570736.1| long-chain-fatty-acid--CoA ligase [Rhodopseudomonas palustris BisB5] gb|ABE40835.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] Length = 514 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/494 (84%), Positives = 452/494 (91%), Gaps = 1/494 (0%) Query: 1 MAGSGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRSGLYYT 60 MAG+GKAITYRELDELSNQGA +FR+LGLKAGDH+ALLMENRLAFMEICWAAQR+GLYYT Sbjct: 19 MAGTGKAITYRELDELSNQGAQMFRALGLKAGDHVALLMENRLAFMEICWAAQRAGLYYT 78 Query: 61 AISRYLTEEEIAYIIKDCGAKVFITTPQCADKVKGLIKGEPGEPLFYMMDEPAPGFRSYD 120 AISRYL ++EIAYI++DCGAKV IT+PQ AD + L+ PG F+M+DEPAPGFRS+D Sbjct: 79 AISRYLKKDEIAYIVQDCGAKVVITSPQGADSIAPLLGTLPGVE-FFMIDEPAPGFRSWD 137 Query: 121 KEAGAQPTTPVAHEVAGYDMLYSSGTTGRPKGIKREFEGNRIDVPNPFLRILTADMCGMN 180 KEAGAQP TP+A EVAGYDMLYSSGTTGRPKGIKREFEGN IDVP+PFLR+L MCGMN Sbjct: 138 KEAGAQPVTPIADEVAGYDMLYSSGTTGRPKGIKREFEGNAIDVPSPFLRLLCERMCGMN 197 Query: 181 ADSIYLSPAPLYHAAPLRFNMMAIVLGGTSVIMEHFDAEEFLKQVEKHKVTQSQLVPTMF 240 DSIYLSPAPLYHAAPLRFNMMA LGGTSVIME+FDAE+FL VEK+KVTQSQLVPTMF Sbjct: 198 QDSIYLSPAPLYHAAPLRFNMMATTLGGTSVIMENFDAEQFLALVEKYKVTQSQLVPTMF 257 Query: 241 VRMLKLPDEVRARYKVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 300 VRMLKLPD++RARY VS+LKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS Sbjct: 258 VRMLKLPDDIRARYDVSTLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 317 Query: 301 TSQQWLTHRGTVGRAVVGKVKILDENDEEAPTGQIGQVYFADAPAFSYHNDPEKTKRAYN 360 TSQQWLTHRGTVG+AVVG +KILD+ EE PTG+IG VYFADAPAFSYHNDP+KTKRAYN Sbjct: 318 TSQQWLTHRGTVGKAVVGIIKILDDAGEEMPTGEIGTVYFADAPAFSYHNDPDKTKRAYN 377 Query: 361 AKGWSTLGDVGYLDEEGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPAVSDVAVFGVP 420 AKGWSTLGDVGYLD EGFLYLTDRKSYMIISGGVNIYPQETEDVL+THP V+DVAVFGVP Sbjct: 378 AKGWSTLGDVGYLDAEGFLYLTDRKSYMIISGGVNIYPQETEDVLLTHPDVADVAVFGVP 437 Query: 421 NEEMGEEVKAVVQPHDIARAGKELEAELIAFCRQHLSPIKCPKSIDFEQDLPRTPTGKLV 480 NEEMGEEVKAVVQ D + GKELEA+LI FCR+HLS IKCP+SIDFE +LPRTPTGKLV Sbjct: 438 NEEMGEEVKAVVQTRDGVKPGKELEAKLIGFCREHLSAIKCPRSIDFEAELPRTPTGKLV 497 Query: 481 KRHLRDRYWPKAPA 494 KRHL+DRYWPK A Sbjct: 498 KRHLKDRYWPKKEA 511 >ref|YP_485300.1| acyl-CoA synthetase [Rhodopseudomonas palustris HaA2] gb|ABD06389.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 514 Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/494 (83%), Positives = 445/494 (90%), Gaps = 1/494 (0%) Query: 1 MAGSGKAITYRELDELSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRSGLYYT 60 MA +GKAITYRELDELSNQGA LFR+LGLKAGDH+ALLMENRLAFMEICWAAQR+GLYYT Sbjct: 19 MASTGKAITYRELDELSNQGAQLFRTLGLKAGDHVALLMENRLAFMEICWAAQRAGLYYT 78 Query: 61 AISRYLTEEEIAYIIKDCGAKVFITTPQCADKVKGLIKGEPGEPLFYMMDEPAPGFRSYD 120 AISRYL ++EIAYI++DCGA+V IT+PQ AD + L+ PG F+M+DEPAPGFRS+D Sbjct: 79 AISRYLKQDEIAYIVQDCGARVVITSPQGADAIAPLVSTLPGVA-FFMVDEPAPGFRSWD 137 Query: 121 KEAGAQPTTPVAHEVAGYDMLYSSGTTGRPKGIKREFEGNRIDVPNPFLRILTADMCGMN 180 KEAGAQPTTP+A EVAGYDMLYSSGTTGRPKGIKREFEGN IDVP+PFLR+L MCGMN Sbjct: 138 KEAGAQPTTPIADEVAGYDMLYSSGTTGRPKGIKREFEGNAIDVPSPFLRLLCERMCGMN 197 Query: 181 ADSIYLSPAPLYHAAPLRFNMMAIVLGGTSVIMEHFDAEEFLKQVEKHKVTQSQLVPTMF 240 DSIYLSPAPLYHAAPLRFNMMA LGGTSVIMEHFDAE+FL VEK+KVTQSQLVPTMF Sbjct: 198 QDSIYLSPAPLYHAAPLRFNMMATTLGGTSVIMEHFDAEQFLALVEKYKVTQSQLVPTMF 257 Query: 241 VRMLKLPDEVRARYKVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 300 VRMLKLPDEVR RY VSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS Sbjct: 258 VRMLKLPDEVRTRYDVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVS 317 Query: 301 TSQQWLTHRGTVGRAVVGKVKILDENDEEAPTGQIGQVYFADAPAFSYHNDPEKTKRAYN 360 TSQQWL+HRGTVG+AVVG +KILDE EE PTG+IG VYFADAPAFSYHNDP+KTK AYN Sbjct: 318 TSQQWLSHRGTVGKAVVGVIKILDEAGEELPTGEIGTVYFADAPAFSYHNDPDKTKNAYN 377 Query: 361 AKGWSTLGDVGYLDEEGFLYLTDRKSYMIISGGVNIYPQETEDVLITHPAVSDVAVFGVP 420 KGWSTLGDVGYLD EGFLYLTDRKSYMIISGGVNIYPQETEDVL+THP V+DVAVFGVP Sbjct: 378 DKGWSTLGDVGYLDAEGFLYLTDRKSYMIISGGVNIYPQETEDVLLTHPDVADVAVFGVP 437 Query: 421 NEEMGEEVKAVVQPHDIARAGKELEAELIAFCRQHLSPIKCPKSIDFEQDLPRTPTGKLV 480 NEEMGEEVKAVVQ D KELEA+LI FCR LS IKCP+SIDFE +LPRTPTGKLV Sbjct: 438 NEEMGEEVKAVVQTRDGVTPSKELEAKLIGFCRDRLSAIKCPRSIDFEAELPRTPTGKLV 497 Query: 481 KRHLRDRYWPKAPA 494 KRHL+DRYWPK A Sbjct: 498 KRHLKDRYWPKKQA 511