BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0027.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769862.1| ABC transporter permease protein [Bradyrhizobiu... 500 e-139 ref|YP_001208438.1| putative ABC transporter permease [Bradyrhiz... 479 e-133 ref|YP_001237079.1| putative ABC transporter permease [Bradyrhiz... 479 e-133 ref|YP_003692779.1| binding-protein-dependent transporters inner... 461 e-128 ref|ZP_08180279.1| sorbitol ABC transporter membrane protein;man... 420 e-115 >ref|NP_769862.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48487.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 260/290 (89%), Positives = 277/290 (95%) Query: 1 MATQQTQLLARTLLTPAVALLFIWMIVPLALTIYFATLRYNLLDPGSESFVGLENFRYFL 60 MAT+QTQ LAR LLTPAV LLFIWMIVPLALTIYF+TL Y+LLDPGSE FVGLENFRYFL Sbjct: 13 MATRQTQFLARALLTPAVGLLFIWMIVPLALTIYFSTLHYSLLDPGSEEFVGLENFRYFL 72 Query: 61 TDPAFLASLQNTLVLVGSVLAITIILGVPLALLLDQQVVGLSIVRLMVIAPFFVMPTVSA 120 TDPAFLASLQNTLVLVGSVLA+TI+LG+PLALL+DQ V+G +IVRLMVIAPFFVMPTVSA Sbjct: 73 TDPAFLASLQNTLVLVGSVLAMTILLGIPLALLMDQPVIGRNIVRLMVIAPFFVMPTVSA 132 Query: 121 LVWKNLLMHPVSGLFAWIAHLFGLPAIDWFNDAPLFSVILIISWQWLPFATLILLTALQS 180 LVWKNLLMHPVSGLFAW+A LFGL IDWFND PLF+VILI++WQWLPFATLILLTALQS Sbjct: 133 LVWKNLLMHPVSGLFAWLAKLFGLTPIDWFNDVPLFAVILIVAWQWLPFATLILLTALQS 192 Query: 181 LDEEQKEAAEMDGARAISTFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 LDEEQKEAAEMDGA A+S FIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL Sbjct: 193 LDEEQKEAAEMDGASAVSAFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 252 Query: 241 QTTNIAFLIYSQALIQYDVGSASAGGLVAVVLANIVAFFLVRIVGRNLEA 290 QTTNIAFLIYSQALIQ+DVGSASAGGLVAVV+AN+VAFFLVRIVGRNLEA Sbjct: 253 QTTNIAFLIYSQALIQFDVGSASAGGLVAVVIANVVAFFLVRIVGRNLEA 302 >ref|YP_001208438.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL80223.1| putative ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 290 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 249/290 (85%), Positives = 270/290 (93%) Query: 1 MATQQTQLLARTLLTPAVALLFIWMIVPLALTIYFATLRYNLLDPGSESFVGLENFRYFL 60 MAT+QTQLLAR L++PAV LLF+WMIVPLALTIYF+TL Y+LLDPGSESFVGLENF YFL Sbjct: 1 MATRQTQLLARALMSPAVMLLFVWMIVPLALTIYFSTLHYSLLDPGSESFVGLENFEYFL 60 Query: 61 TDPAFLASLQNTLVLVGSVLAITIILGVPLALLLDQQVVGLSIVRLMVIAPFFVMPTVSA 120 TDPAFLASLQNTLVLVGSVL +TI LG+PLA+LLDQ V+G + +RLMVIAPFFVMPTVSA Sbjct: 61 TDPAFLASLQNTLVLVGSVLLLTIGLGIPLAILLDQPVIGRNFIRLMVIAPFFVMPTVSA 120 Query: 121 LVWKNLLMHPVSGLFAWIAHLFGLPAIDWFNDAPLFSVILIISWQWLPFATLILLTALQS 180 LVWKNLLMHPVSGLFAWIA G IDWF DAPL +VI I++WQWLPFATLILLTALQS Sbjct: 121 LVWKNLLMHPVSGLFAWIATSLGFTPIDWFTDAPLLAVIFIVAWQWLPFATLILLTALQS 180 Query: 181 LDEEQKEAAEMDGARAISTFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 LDEEQKEAAEMDGA A+S FIY+TLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL Sbjct: 181 LDEEQKEAAEMDGASALSRFIYLTLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 Query: 241 QTTNIAFLIYSQALIQYDVGSASAGGLVAVVLANIVAFFLVRIVGRNLEA 290 QTTNIAFL+YSQALIQ+DVG+ASAGGLVAVV+ANIVAFFLVRIVGRNLEA Sbjct: 241 QTTNIAFLVYSQALIQFDVGTASAGGLVAVVIANIVAFFLVRIVGRNLEA 290 >ref|YP_001237079.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ33173.1| sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein [Bradyrhizobium sp. BTAi1] Length = 290 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 250/290 (86%), Positives = 271/290 (93%) Query: 1 MATQQTQLLARTLLTPAVALLFIWMIVPLALTIYFATLRYNLLDPGSESFVGLENFRYFL 60 MAT+QTQLLAR LL+PAV LLFIWMIVPLALT+YF+TL Y+LLDPGSESFVGLENF YFL Sbjct: 1 MATRQTQLLARALLSPAVILLFIWMIVPLALTVYFSTLHYSLLDPGSESFVGLENFEYFL 60 Query: 61 TDPAFLASLQNTLVLVGSVLAITIILGVPLALLLDQQVVGLSIVRLMVIAPFFVMPTVSA 120 TDPAFLASLQNTLVLVGSVL +TI LG+PLALLLDQ V+G +I+RLMVIAPFFVMPTVSA Sbjct: 61 TDPAFLASLQNTLVLVGSVLLLTIGLGIPLALLLDQPVIGRNIIRLMVIAPFFVMPTVSA 120 Query: 121 LVWKNLLMHPVSGLFAWIAHLFGLPAIDWFNDAPLFSVILIISWQWLPFATLILLTALQS 180 LVWKNLLMHPVSGLFAWIA G+ IDWF DAPL +VI I++WQWLPFATLILLTALQS Sbjct: 121 LVWKNLLMHPVSGLFAWIATSLGMTPIDWFTDAPLLAVIFIVAWQWLPFATLILLTALQS 180 Query: 181 LDEEQKEAAEMDGARAISTFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 LDEEQKEAAEMDGA +S FIY+T+PHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL Sbjct: 181 LDEEQKEAAEMDGAGPLSRFIYLTVPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 Query: 241 QTTNIAFLIYSQALIQYDVGSASAGGLVAVVLANIVAFFLVRIVGRNLEA 290 QTTNIAFL+YSQALIQ+DVG+ASAGGLVAVV+ANIVAFFLVRIVGRNLEA Sbjct: 241 QTTNIAFLVYSQALIQFDVGTASAGGLVAVVIANIVAFFLVRIVGRNLEA 290 >ref|YP_003692779.1| binding-protein-dependent transporters inner membrane component [Starkeya novella DSM 506] gb|ADH88160.1| binding-protein-dependent transport systems inner membrane component [Starkeya novella DSM 506] Length = 290 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/289 (80%), Positives = 257/289 (88%) Query: 1 MATQQTQLLARTLLTPAVALLFIWMIVPLALTIYFATLRYNLLDPGSESFVGLENFRYFL 60 MATQQTQ L R LLTPAVALLF+WMI+PL +TIYF+ L YNLL+PG E F+GLEN+ YFL Sbjct: 1 MATQQTQTLGRLLLTPAVALLFVWMIIPLGMTIYFSLLSYNLLNPGMERFIGLENYVYFL 60 Query: 61 TDPAFLASLQNTLVLVGSVLAITIILGVPLALLLDQQVVGLSIVRLMVIAPFFVMPTVSA 120 TDPAFLASL+NTLVLVGSVL IT+++G +ALLLDQ VG SIVRLMVIAPFFVMPTVSA Sbjct: 61 TDPAFLASLRNTLVLVGSVLIITVVVGTLVALLLDQAFVGRSIVRLMVIAPFFVMPTVSA 120 Query: 121 LVWKNLLMHPVSGLFAWIAHLFGLPAIDWFNDAPLFSVILIISWQWLPFATLILLTALQS 180 LVWKNLLMHPVSG+FAWI GL IDWF PLFS++LI++WQW PFA LILLTALQS Sbjct: 121 LVWKNLLMHPVSGMFAWIMTSVGLEPIDWFAQYPLFSIVLIVAWQWTPFAALILLTALQS 180 Query: 181 LDEEQKEAAEMDGARAISTFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 LDEEQ+EAA MDGA A STF+YITLPHLARPI VVILIETIFLLTVFAEI+VTTGGGPGL Sbjct: 181 LDEEQREAALMDGAGAFSTFLYITLPHLARPIAVVILIETIFLLTVFAEIYVTTGGGPGL 240 Query: 241 QTTNIAFLIYSQALIQYDVGSASAGGLVAVVLANIVAFFLVRIVGRNLE 289 QTTNIAFLIYSQALIQYDVG ASAGGLVAVV+ANI+A FL+RIVGR+LE Sbjct: 241 QTTNIAFLIYSQALIQYDVGGASAGGLVAVVIANILAIFLMRIVGRSLE 289 >ref|ZP_08180279.1| sorbitol ABC transporter membrane protein;mannitol ABC transporter membrane protein [Xanthomonas vesicatoria ATCC 35937] gb|EGD07511.1| sorbitol ABC transporter membrane protein;mannitol ABC transporter membrane protein [Xanthomonas vesicatoria ATCC 35937] Length = 289 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/289 (73%), Positives = 247/289 (85%), Gaps = 1/289 (0%) Query: 1 MATQQTQLLARTLLTPAVALLFIWMIVPLALTIYFATLRYNLLDPGSESFVGLENFRYFL 60 MAT QTQ LAR L+ PA+ LL WMIVPLA+T++F+TL YNLL P ++FVG N+RYFL Sbjct: 1 MATHQTQKLARFLIAPAIVLLLAWMIVPLAMTVWFSTLNYNLLTP-DKTFVGPGNYRYFL 59 Query: 61 TDPAFLASLQNTLVLVGSVLAITIILGVPLALLLDQQVVGLSIVRLMVIAPFFVMPTVSA 120 +PAF++SL NTL+LVGSVLAIT + GV +ALLLDQ VG IVRLM+IAPFFVMPTVSA Sbjct: 60 GNPAFMSSLGNTLLLVGSVLAITAVFGVLIALLLDQVFVGRRIVRLMLIAPFFVMPTVSA 119 Query: 121 LVWKNLLMHPVSGLFAWIAHLFGLPAIDWFNDAPLFSVILIISWQWLPFATLILLTALQS 180 L+WKNLLMHPVSGL AW+ GL IDWF P+FS+I+I++WQWLPFA LILLTALQS Sbjct: 120 LIWKNLLMHPVSGLLAWLWQCAGLTPIDWFTQYPMFSIIVIVAWQWLPFAVLILLTALQS 179 Query: 181 LDEEQKEAAEMDGARAISTFIYITLPHLARPITVVILIETIFLLTVFAEIFVTTGGGPGL 240 LDEEQ+EAA MDGA A F ++TLPHLARP+T+V+LIETIFLLTVF EI+VTTGGGPGL Sbjct: 180 LDEEQQEAALMDGAGAFDRFFHLTLPHLARPLTIVVLIETIFLLTVFVEIYVTTGGGPGL 239 Query: 241 QTTNIAFLIYSQALIQYDVGSASAGGLVAVVLANIVAFFLVRIVGRNLE 289 QTTN+A+LIYSQAL+QYDVG+ASAGGL+AVVLANI A FLVRIVG+NLE Sbjct: 240 QTTNLAYLIYSQALLQYDVGAASAGGLIAVVLANIAAIFLVRIVGKNLE 288