BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0018.p         (44 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_484073.1| diguanylate cyclase/phosphodiesterase [Rhodopse...    49   3e-04
ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cycla...    47   8e-04
ref|YP_001989410.1| PAS/PAC sensor-containing diguanylate cyclas...    38   0.54 
ref|NP_945723.1| diguanylate cyclase/phosphodiesterase [Rhodopse...    35   3.0  

>ref|YP_484073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
          HaA2]
 gb|ABD05162.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
          HaA2]
          Length = 844

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 26/31 (83%)

Query: 1  MGYWESQSAAATDLWISPELAAFYEFETADG 31
          +GYWES SAAATD WISPE A+ ++F+T+ G
Sbjct: 34 IGYWESYSAAATDFWISPEFASLFDFQTSKG 64


>ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
          [Rhodopseudomonas palustris DX-1]
 gb|ADU41850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
          [Rhodopseudomonas palustris DX-1]
          Length = 840

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 1  MGYWESQSAAATDLWISPELAAFYEFETADG 31
          + YWES SAA TD W+SPE A+ Y+F+T DG
Sbjct: 34 VAYWESHSAAETDFWMSPEFASLYDFQTPDG 64


>ref|YP_001989410.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
          [Rhodopseudomonas palustris TIE-1]
 gb|ACE98934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
          [Rhodopseudomonas palustris TIE-1]
          Length = 840

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 3  YWESQSAAATDLWISPELAAFYEFETAD 30
          YWES SAAATD W+S E  + Y+ ET D
Sbjct: 36 YWESYSAAATDFWMSAEFTSLYDAETPD 63


>ref|NP_945723.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
          CGA009]
 emb|CAE25814.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
          PAS domains [Rhodopseudomonas palustris CGA009]
          Length = 838

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 3  YWESQSAAATDLWISPELAAFYEFETAD 30
          YWES SA ATD W+S E  + Y+ +T D
Sbjct: 36 YWESYSATATDFWMSAEFTSLYDADTPD 63