BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0013.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772498.1| hypothetical protein blr5858 [Bradyrhizobium ja...   270   8e-71
ref|YP_001241407.1| putative universal stress protein (Usp) [Bra...   256   1e-66
ref|YP_001206982.1| putative universal stress protein (Usp) [Bra...   255   1e-66
ref|YP_576611.1| hypothetical protein Nham_1327 [Nitrobacter ham...   246   7e-64
ref|ZP_01046010.1| hypothetical protein NB311A_11652 [Nitrobacte...   243   8e-63

>ref|NP_772498.1| hypothetical protein blr5858 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51123.1| blr5858 [Bradyrhizobium japonicum USDA 110]
          Length = 141

 Score =  270 bits (689), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/141 (92%), Positives = 134/141 (95%)

Query: 1   MYKSILVPIDLADTDLAKPAIATAATLSQTWNGTVRLLNVLPMTPVMLAEYVPADFDSQQ 60
           M+KSILVPIDLADTDLAKPAIATAATLSQTW+GTVRLLNVLPMTPVMLAEYVPADFD QQ
Sbjct: 1   MFKSILVPIDLADTDLAKPAIATAATLSQTWSGTVRLLNVLPMTPVMLAEYVPADFDEQQ 60

Query: 61  RETSEEALAIVARESGIAPSRISGVVRQGGIYHEILEEAATMKADLIVMTSHRPAMRTYF 120
           R+TSEEALAIVARESGI  S IS VVRQGGIYHEILEEA  MKADLIVMTSHRPAMRTYF
Sbjct: 61  RQTSEEALAIVARESGIEASHISSVVRQGGIYHEILEEAVHMKADLIVMTSHRPAMRTYF 120

Query: 121 LGSNAGHVVRYAKCSVLVVRH 141
           LGSNAGHVVRYAKCSVLVVRH
Sbjct: 121 LGSNAGHVVRYAKCSVLVVRH 141


>ref|YP_001241407.1| putative universal stress protein (Usp) [Bradyrhizobium sp. BTAi1]
 gb|ABQ37501.1| Putative Universal stress protein (Usp) [Bradyrhizobium sp. BTAi1]
          Length = 141

 Score =  256 bits (653), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 132/140 (94%)

Query: 1   MYKSILVPIDLADTDLAKPAIATAATLSQTWNGTVRLLNVLPMTPVMLAEYVPADFDSQQ 60
           M+KSILVPIDLADTDLAKPAIATAATL++TW GTV LLNV+PMTPVMLAEYVPADFD+QQ
Sbjct: 1   MFKSILVPIDLADTDLAKPAIATAATLAETWAGTVHLLNVMPMTPVMLAEYVPADFDTQQ 60

Query: 61  RETSEEALAIVARESGIAPSRISGVVRQGGIYHEILEEAATMKADLIVMTSHRPAMRTYF 120
           RET+EEAL+IVARESGI   R+S  VRQGGIYHEILEEAA +KADLIVMTSHRPAMRTYF
Sbjct: 61  RETAEEALSIVARESGIPAERVSYAVRQGGIYHEILEEAAKVKADLIVMTSHRPAMRTYF 120

Query: 121 LGSNAGHVVRYAKCSVLVVR 140
           LGSNAGHVVRYAKCSVLVVR
Sbjct: 121 LGSNAGHVVRYAKCSVLVVR 140


>ref|YP_001206982.1| putative universal stress protein (Usp) [Bradyrhizobium sp. ORS
           278]
 emb|CAL78765.1| Putative Universal stress protein (Usp) [Bradyrhizobium sp. ORS
           278]
          Length = 141

 Score =  255 bits (652), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 132/140 (94%)

Query: 1   MYKSILVPIDLADTDLAKPAIATAATLSQTWNGTVRLLNVLPMTPVMLAEYVPADFDSQQ 60
           M+KSILVPIDLADTDLAKPAIATAATL++TW GTV LLNV+PMTPVMLAEYVPADFD+QQ
Sbjct: 1   MFKSILVPIDLADTDLAKPAIATAATLAETWQGTVHLLNVMPMTPVMLAEYVPADFDAQQ 60

Query: 61  RETSEEALAIVARESGIAPSRISGVVRQGGIYHEILEEAATMKADLIVMTSHRPAMRTYF 120
           RET+EEAL+IVARESGI   RIS  VRQGGIYHEILEEAA ++ADLIVMTSHRPAMRTYF
Sbjct: 61  RETAEEALSIVARESGIPTERISYTVRQGGIYHEILEEAAKVQADLIVMTSHRPAMRTYF 120

Query: 121 LGSNAGHVVRYAKCSVLVVR 140
           LGSNAGHVVRYAKCSVLVVR
Sbjct: 121 LGSNAGHVVRYAKCSVLVVR 140


>ref|YP_576611.1| hypothetical protein Nham_1327 [Nitrobacter hamburgensis X14]
 gb|ABE62151.1| UspA [Nitrobacter hamburgensis X14]
          Length = 141

 Score =  246 bits (628), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 128/141 (90%)

Query: 1   MYKSILVPIDLADTDLAKPAIATAATLSQTWNGTVRLLNVLPMTPVMLAEYVPADFDSQQ 60
           M+KSILVPIDL+DTDLAKPAIATA +LSQ  NGT+RLLNVL MTPVMLAEY+PADF +QQ
Sbjct: 1   MFKSILVPIDLSDTDLAKPAIATAVSLSQASNGTIRLLNVLQMTPVMLAEYLPADFGAQQ 60

Query: 61  RETSEEALAIVARESGIAPSRISGVVRQGGIYHEILEEAATMKADLIVMTSHRPAMRTYF 120
           R++SEEALAIVA E GI PSR+S VVRQG IYHEILEEA  +KADLIVM SHRPAM+TYF
Sbjct: 61  RQSSEEALAIVASEVGIEPSRMSSVVRQGSIYHEILEEAQAIKADLIVMASHRPAMKTYF 120

Query: 121 LGSNAGHVVRYAKCSVLVVRH 141
           LGSNAGHVVRYAKCSVLVVRH
Sbjct: 121 LGSNAGHVVRYAKCSVLVVRH 141


>ref|ZP_01046010.1| hypothetical protein NB311A_11652 [Nitrobacter sp. Nb-311A]
 gb|EAQ36094.1| hypothetical protein NB311A_11652 [Nitrobacter sp. Nb-311A]
          Length = 159

 Score =  243 bits (620), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 1   MYKSILVPIDLADTDLAKPAIATAATLSQTWNGTVRLLNVLPMTPVMLAEYVPADFDSQQ 60
           M+KSILVPIDL+DTDLAKPAIATA +LSQT NGT+RLLNVL MTPVMLAEYVPADFD QQ
Sbjct: 18  MFKSILVPIDLSDTDLAKPAIATAVSLSQTSNGTIRLLNVLHMTPVMLAEYVPADFDVQQ 77

Query: 61  RETSEEALAIVARESGIAPSRISGVVRQG-GIYHEILEEAATMKADLIVMTSHRPAMRTY 119
           R++SE+ALAIVARE GI PSRIS +VRQG  IYHEILEEA  ++ADLIVM SHRPAM+TY
Sbjct: 78  RQSSEDALAIVAREVGIEPSRISSMVRQGSSIYHEILEEAQAIEADLIVMASHRPAMKTY 137

Query: 120 FLGSNAGHVVRYAKCSVLVVRH 141
           FLGSNAGHVVRYA+CSVLVVRH
Sbjct: 138 FLGSNAGHVVRYARCSVLVVRH 159