BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0007.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208092.1| branched chain amino acid ABC transporter su... 630 e-178 ref|YP_001993616.1| branched-chain amino acid ABC transporter su... 605 e-171 ref|NP_949506.1| branched chain amino-acid ABC transporter subst... 605 e-171 ref|ZP_08629126.1| hypothetical protein CSIRO_2213 [Bradyrhizobi... 432 e-119 ref|YP_001993216.1| ABC transporter substrate-binding protein [R... 432 e-119 >ref|YP_001208092.1| branched chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79877.1| Putative ABC transporter (substrate-binding protein); putative branched-chain amino acid transporter [Bradyrhizobium sp. ORS 278] Length = 400 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 295/396 (74%), Positives = 342/396 (86%), Gaps = 1/396 (0%) Query: 1 MRKAFGALGAISFLLLPTSSS-AAEMRGVTSTEIRIGQTMPYSGPVSAFGALGKGEAGYF 59 MR A A G I+ +P S++ AAE GVT+TEIRIGQTMPYSGPVSAFG LGKGE YF Sbjct: 1 MRSAIAAAGFIAVSSMPMSAARAAEQPGVTATEIRIGQTMPYSGPVSAFGILGKGEVAYF 60 Query: 60 RMLNERGGINGRKINFISLDDSYAPPKTVEQTRRLVESDEVALIFSSIGTAHNTAIAKYL 119 +M+N+RGGINGRK+N +SLDDSY PPKTVEQTRRLVESDEV+ IFS++GTAHNTAIA+YL Sbjct: 61 KMVNDRGGINGRKVNLLSLDDSYVPPKTVEQTRRLVESDEVSFIFSTMGTAHNTAIARYL 120 Query: 120 QGKNIPQLFLASGASKFGDIAQFPQATMGVQAPFRYEARLYARYALAKNPNARFAVISQN 179 QGK +PQLF+ASGASKFGD AQFP MGV APFR EAR+YARYAL K P A FAV++QN Sbjct: 121 QGKKVPQLFVASGASKFGDAAQFPLTLMGVMAPFRNEARMYARYALQKKPEATFAVLAQN 180 Query: 180 DDYGRDYLAGLKDVLGEKYESLVTVATYEITDPTIDSQIVKLKATNADVLVIAATPKFAA 239 DD+GRDYLAGLKDVLGE++++ VTVA+YE T+PTIDSQIVKLK+T AD L+IAATPKFAA Sbjct: 181 DDFGRDYLAGLKDVLGERFDTAVTVASYEATEPTIDSQIVKLKSTGADALIIAATPKFAA 240 Query: 240 QSIRKAFEIGWRPMTFLSNTAVWISTVMQPAGLEAGTGIISTAYVKDPDDPAWSDDPGMK 299 Q+IRK +EI WRPMTFL+N +VW+S+VM+PAGLEAGTGIISTAYVKDP DPAW+DD G+K Sbjct: 241 QAIRKTYEINWRPMTFLTNVSVWMSSVMEPAGLEAGTGIISTAYVKDPLDPAWADDAGVK 300 Query: 300 GWREFMTRYVPEGDQHDTNYVNAYNSAMALEAVLKACGDDLSTENILRQAFAIKGLELPM 359 GWREFM RYVP+GD D+NYVN YN+ M LE VLKA GDDLS ENILRQA +IK LELPM Sbjct: 301 GWREFMARYVPDGDVRDSNYVNGYNNGMVLEHVLKAAGDDLSRENILRQALSIKDLELPM 360 Query: 360 LLPGIKVNTSPADHVPVDQMQLMRFNGKTWDRFGEL 395 LLPGI VNTS +DH+PV+Q+Q MRF GK W+RFGE+ Sbjct: 361 LLPGITVNTSESDHLPVEQVQFMRFTGKQWERFGEV 396 >ref|YP_001993616.1| branched-chain amino acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF03141.1| putative ABC transporter (substrate-binding protein); putative branched-chain amino acid transporter [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 277/391 (70%), Positives = 336/391 (85%) Query: 7 ALGAISFLLLPTSSSAAEMRGVTSTEIRIGQTMPYSGPVSAFGALGKGEAGYFRMLNERG 66 AL A+S L+ T++SA + G+T TEIRIGQTMPYSGPVSAFG LGKGE YF+M+N+RG Sbjct: 8 ALLAVSLGLIGTAASAEDQPGITQTEIRIGQTMPYSGPVSAFGILGKGELAYFKMVNDRG 67 Query: 67 GINGRKINFISLDDSYAPPKTVEQTRRLVESDEVALIFSSIGTAHNTAIAKYLQGKNIPQ 126 GINGRKIN ISLDD Y PPKTVEQTRRLVESDEV+ IFS++GTAHNTAIAKYLQ K +PQ Sbjct: 68 GINGRKINLISLDDGYVPPKTVEQTRRLVESDEVSFIFSTMGTAHNTAIAKYLQNKKVPQ 127 Query: 127 LFLASGASKFGDIAQFPQATMGVQAPFRYEARLYARYALAKNPNARFAVISQNDDYGRDY 186 LF+ASGASKFGDI+Q+P A MG+ APFR EAR+YARYAL K P+A FAVI+QNDD+GRDY Sbjct: 128 LFVASGASKFGDISQYPLAIMGIMAPFRNEARMYARYALEKKPDATFAVIAQNDDFGRDY 187 Query: 187 LAGLKDVLGEKYESLVTVATYEITDPTIDSQIVKLKATNADVLVIAATPKFAAQSIRKAF 246 LAGL+DVLGE+Y+ VT + YE+TDPTIDSQIV LKA+ AD L+IAATPKFAAQ+IRK F Sbjct: 188 LAGLRDVLGERYDKAVTASMYEVTDPTIDSQIVSLKASGADALIIAATPKFAAQAIRKTF 247 Query: 247 EIGWRPMTFLSNTAVWISTVMQPAGLEAGTGIISTAYVKDPDDPAWSDDPGMKGWREFMT 306 EIGW+PM FLSN +VW+S+VM+PAG++AG GIISTAYVKDP DPAW++DPG+K WR +M Sbjct: 248 EIGWKPMRFLSNVSVWMSSVMEPAGVDAGVGIISTAYVKDPLDPAWANDPGVKDWRAYMQ 307 Query: 307 RYVPEGDQHDTNYVNAYNSAMALEAVLKACGDDLSTENILRQAFAIKGLELPMLLPGIKV 366 +Y+P+GD D+NYVN YN+ M LE VLKA G+DLS +NI++QA +IK LELPMLLPGIKV Sbjct: 308 KYIPDGDLRDSNYVNGYNNGMVLEHVLKAAGNDLSRDNIMKQALSIKELELPMLLPGIKV 367 Query: 367 NTSPADHVPVDQMQLMRFNGKTWDRFGELQT 397 T+ DH+P++Q+Q MRF GK W+RFGE+++ Sbjct: 368 QTAADDHLPIEQVQFMRFTGKQWERFGEVRS 398 >ref|NP_949506.1| branched chain amino-acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE29611.1| possible branched-chain amino acid ABC transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] Length = 400 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 276/391 (70%), Positives = 336/391 (85%) Query: 7 ALGAISFLLLPTSSSAAEMRGVTSTEIRIGQTMPYSGPVSAFGALGKGEAGYFRMLNERG 66 AL A+S L+ T++SA + G+T TEIRIGQTMPYSGPVSAFG LGKGE YF+M+N+RG Sbjct: 8 ALLAVSLGLIGTAASAEDQPGITQTEIRIGQTMPYSGPVSAFGILGKGELAYFKMVNDRG 67 Query: 67 GINGRKINFISLDDSYAPPKTVEQTRRLVESDEVALIFSSIGTAHNTAIAKYLQGKNIPQ 126 GINGRK+N ISLDD Y PPKTVEQTRRLVESDEV+ IFS++GTAHNTAIAKYLQ K +PQ Sbjct: 68 GINGRKVNLISLDDGYVPPKTVEQTRRLVESDEVSFIFSTMGTAHNTAIAKYLQNKKVPQ 127 Query: 127 LFLASGASKFGDIAQFPQATMGVQAPFRYEARLYARYALAKNPNARFAVISQNDDYGRDY 186 LF+ASGASKFGDI+Q+P A MG+ APFR EAR+YARYA+ K P+A FAVI+QNDD+GRDY Sbjct: 128 LFVASGASKFGDISQYPLAIMGIMAPFRNEARMYARYAMEKKPDATFAVIAQNDDFGRDY 187 Query: 187 LAGLKDVLGEKYESLVTVATYEITDPTIDSQIVKLKATNADVLVIAATPKFAAQSIRKAF 246 LAGL+DVLGE+Y+ VT + YE+TDPTIDSQIV LKA+ AD L+IAATPKFAAQ+IRK F Sbjct: 188 LAGLRDVLGERYDKAVTASMYEVTDPTIDSQIVSLKASGADALIIAATPKFAAQAIRKTF 247 Query: 247 EIGWRPMTFLSNTAVWISTVMQPAGLEAGTGIISTAYVKDPDDPAWSDDPGMKGWREFMT 306 EIGW+PM FLSN +VW+S+VM+PAG+EAG GIISTAYVKDP DPAW++DPG+K WR +M Sbjct: 248 EIGWKPMRFLSNVSVWMSSVMEPAGVEAGVGIISTAYVKDPLDPAWANDPGVKDWRAYMQ 307 Query: 307 RYVPEGDQHDTNYVNAYNSAMALEAVLKACGDDLSTENILRQAFAIKGLELPMLLPGIKV 366 +Y+P+GD D+NYVN YN+ M LE VLKA G+DLS +NI++QA +IK LELPMLLPGIKV Sbjct: 308 KYIPDGDLRDSNYVNGYNNGMVLEHVLKAAGNDLSRDNIMKQALSIKELELPMLLPGIKV 367 Query: 367 NTSPADHVPVDQMQLMRFNGKTWDRFGELQT 397 T+ DH+P++Q+Q MRF GK W+RFGE+++ Sbjct: 368 QTAADDHLPIEQVQFMRFTGKQWERFGEVRS 398 >ref|ZP_08629126.1| hypothetical protein CSIRO_2213 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08485.1| hypothetical protein CSIRO_2213 [Bradyrhizobiaceae bacterium SG-6C] Length = 393 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 196/372 (52%), Positives = 270/372 (72%), Gaps = 1/372 (0%) Query: 27 GVTSTEIRIGQTMPYSGPVSAFGALGKGEAGYFRMLNERGGINGRKINFISLDDSYAPPK 86 G T TEI+IG +PYSGP SA+G +GK GYF+ +N+ GGINGRKINFIS DD+Y+PPK Sbjct: 16 GATDTEIKIGNIIPYSGPASAYGVVGKAMEGYFKKVNDDGGINGRKINFISYDDAYSPPK 75 Query: 87 TVEQTRRLVESDEVALIFSSIGTAHNTAIAKYLQGKNIPQLFLASGASKFGDIAQFPQAT 146 VEQTR+LVESDEV L+F ++GT N+AI KY+ K P LFLA+GA+K+ D FP T Sbjct: 76 AVEQTRKLVESDEVLLVFGALGTPSNSAIHKYMNAKKTPHLFLATGATKWNDPKSFPW-T 134 Query: 147 MGVQAPFRYEARLYARYALAKNPNARFAVISQNDDYGRDYLAGLKDVLGEKYESLVTVAT 206 MG ++ EAR+YA+Y L + PNA+ A++ QNDD+G+DYL G++D LG+K +V + Sbjct: 135 MGWLPSYQSEARIYAKYLLKEKPNAKVAILYQNDDFGKDYLKGVQDGLGDKKSMIVAEES 194 Query: 207 YEITDPTIDSQIVKLKATNADVLVIAATPKFAAQSIRKAFEIGWRPMTFLSNTAVWISTV 266 YE+++PTIDS IVKLK N DVL++ TPKF AQ+I+K E+ W+PM +SN + +TV Sbjct: 195 YELSEPTIDSHIVKLKTLNPDVLLVFTTPKFGAQTIKKVGELAWKPMLIISNVSASTATV 254 Query: 267 MQPAGLEAGTGIISTAYVKDPDDPAWSDDPGMKGWREFMTRYVPEGDQHDTNYVNAYNSA 326 M+PAG + G+IS AY KD DP W+DDPGMK ++ F+ +YVPE + D++ + YN A Sbjct: 255 MKPAGFDNAQGVISAAYAKDTSDPQWNDDPGMKEYKAFLAKYVPEANVADSSALTGYNMA 314 Query: 327 MALEAVLKACGDDLSTENILRQAFAIKGLELPMLLPGIKVNTSPADHVPVDQMQLMRFNG 386 + AVLK CGD+L+ EN+++QA +I G++ LLPG+ + TS D P++Q+QLMRF G Sbjct: 315 QTMAAVLKQCGDNLTRENVMKQAASIGGIQQGGLLPGVLIKTSATDFAPIEQLQLMRFKG 374 Query: 387 KTWDRFGELQTG 398 + W+ FGE+Q G Sbjct: 375 ERWELFGEVQDG 386 >ref|YP_001993216.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF02741.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] Length = 410 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 197/370 (53%), Positives = 264/370 (71%), Gaps = 2/370 (0%) Query: 27 GVTSTEIRIGQTMPYSGPVSAFGALGKGEAGYFRMLNERGGINGRKINFISLDDSYAPPK 86 GVT TEI+IG +PYSGP SA+G +GK E YFRM+NERGGINGRKINFIS DD+Y+PPK Sbjct: 34 GVTDTEIKIGNIIPYSGPASAYGTIGKTEEAYFRMVNERGGINGRKINFISYDDAYSPPK 93 Query: 87 TVEQTRRLVESDEVALIFSSIGTAHNTAIAKYLQGKNIPQLFLASGASKFGDIAQFPQAT 146 VEQ R+LVE DEV +F+ +GT NTAI KYL K +PQLF+A+GASK+ D FP T Sbjct: 94 AVEQVRKLVEGDEVLAVFNPLGTPSNTAIQKYLNAKKVPQLFVATGASKWNDPKAFPW-T 152 Query: 147 MGVQAPFRYEARLYARYALAKNPNARFAVISQNDDYGRDYLAGLKDVLGEKYESLVTVA- 205 +G Q ++ EA++Y +Y + + PNA+ A++ QNDD+G+DYL G KD GEK S++ Sbjct: 153 IGWQPSYQSEAQIYVKYIIKEKPNAKVAILYQNDDFGKDYLKGTKDGFGEKGASMIIAEE 212 Query: 206 TYEITDPTIDSQIVKLKATNADVLVIAATPKFAAQSIRKAFEIGWRPMTFLSNTAVWIST 265 YEI++PTIDS IVKLK+ N DVL+I TPKF AQ+IRK EIGW+P+ L+N + + + Sbjct: 213 AYEISEPTIDSHIVKLKSLNPDVLLIYTTPKFGAQTIRKTAEIGWKPLQILTNVSASVGS 272 Query: 266 VMQPAGLEAGTGIISTAYVKDPDDPAWSDDPGMKGWREFMTRYVPEGDQHDTNYVNAYNS 325 VMQPAG + G++S Y KDP DP W +DP K W F+ +Y+P ++ D N V Y + Sbjct: 273 VMQPAGFDNAQGVLSANYAKDPTDPQWDNDPRFKKWHAFVDKYMPGANKADGNLVYGYGA 332 Query: 326 AMALEAVLKACGDDLSTENILRQAFAIKGLELPMLLPGIKVNTSPADHVPVDQMQLMRFN 385 A L VL+ CGD+L+ EN+++QA ++K E LLPG+K+NTSP D P+ Q+Q+MRF Sbjct: 333 AQTLHKVLEMCGDNLTRENLMKQAASLKDFEPDTLLPGVKINTSPTDFAPISQLQMMRFK 392 Query: 386 GKTWDRFGEL 395 G W+ FG++ Sbjct: 393 GDKWELFGDI 402