BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0002.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium ja... 306 3e-81 ref|ZP_08627417.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiac... 296 2e-78 ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium ... 294 9e-78 ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogr... 291 6e-77 ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter... 290 1e-76 >ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110] sp|Q9XBG6.1|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum] dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/214 (77%), Positives = 187/214 (87%) Query: 3 DDQSAIPARDAKRLFAGLAGAPAILLAVSGGPDSVALMWLAARWRRALAQGPRLVAVTVD 62 DD S I AR+AK+LFA L APA++LAVSGGPDS+ALMWLAARW+R+LA+GPRL VTVD Sbjct: 4 DDNSPISAREAKQLFAELKSAPALVLAVSGGPDSIALMWLAARWQRSLARGPRLTVVTVD 63 Query: 63 HGLRPEAAREARDVKRLARSLDLPHHTLRWTGPKPGTGVPAAARAARYRLLAQAARKHGA 122 HGLR EAAREAR+VKRLA L LPH TLRW G KP TG+PAAAR ARYRLL QAAR GA Sbjct: 64 HGLRAEAAREAREVKRLATELGLPHRTLRWRGAKPKTGLPAAAREARYRLLMQAARSAGA 123 Query: 123 THILTAHTRDDQAETLLMRMLRGSGVAGLSAMARETERDGVLLTRPLLDVSKAQLIATLK 182 +H+LTAHTRDDQAETLLMR++RGSG+AGLSAMAR TERDG++L RPLLDV KAQLIATLK Sbjct: 124 SHVLTAHTRDDQAETLLMRLVRGSGLAGLSAMARLTERDGIVLARPLLDVPKAQLIATLK 183 Query: 183 KARIGFADDPTNRDRSFTRPRLRALMPMLAGGGG 216 +A+IGFADDPTNRD +FTRPRLRAL+P LA GG Sbjct: 184 RAKIGFADDPTNRDTAFTRPRLRALLPQLAAEGG 217 >ref|ZP_08627417.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10043.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C] Length = 357 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/216 (70%), Positives = 180/216 (83%), Gaps = 1/216 (0%) Query: 1 MPD-DQSAIPARDAKRLFAGLAGAPAILLAVSGGPDSVALMWLAARWRRALAQGPRLVAV 59 MP + S + +DAKRLF+G +PAI+LAVSGGPDSVALMWLAARWR+ L QGPRLVAV Sbjct: 9 MPSVETSPVSVQDAKRLFSGWKASPAIVLAVSGGPDSVALMWLAARWRKTLKQGPRLVAV 68 Query: 60 TVDHGLRPEAAREARDVKRLARSLDLPHHTLRWTGPKPGTGVPAAARAARYRLLAQAARK 119 TVDHGLR EAAREARDVK LA +LD+ H T++W G KP TG+P+AAR ARYRLLA+AA+ Sbjct: 69 TVDHGLRKEAAREARDVKHLAAALDIEHRTMKWRGDKPKTGLPSAARDARYRLLARAAKS 128 Query: 120 HGATHILTAHTRDDQAETLLMRMLRGSGVAGLSAMARETERDGVLLTRPLLDVSKAQLIA 179 GA+HILTAHT+DDQAET++MR+ RGSG+AGL+AMAR+T+R V+L RP LDV KA+L+A Sbjct: 129 CGASHILTAHTQDDQAETVIMRLSRGSGIAGLAAMARQTDRGDVVLVRPFLDVPKARLVA 188 Query: 180 TLKKARIGFADDPTNRDRSFTRPRLRALMPMLAGGG 215 TL+KA I FADDPTN D FTRPRLRALMP LA G Sbjct: 189 TLEKAGIAFADDPTNHDPRFTRPRLRALMPALAAEG 224 >ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278] emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278] Length = 367 Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/217 (69%), Positives = 180/217 (82%) Query: 3 DDQSAIPARDAKRLFAGLAGAPAILLAVSGGPDSVALMWLAARWRRALAQGPRLVAVTVD 62 DD I +A+ LFA LA APA++LAVSGGPDS+AL+WLAARWR+ALA GPRLVA+TVD Sbjct: 13 DDGRPIGVAEAEVLFASLADAPALVLAVSGGPDSMALLWLAARWRQALADGPRLVAITVD 72 Query: 63 HGLRPEAAREARDVKRLARSLDLPHHTLRWTGPKPGTGVPAAARAARYRLLAQAARKHGA 122 HGLRPEA REA VKR AR L++ H LRWT PKP TG+P AAR ARYRLLA+AAR+ GA Sbjct: 73 HGLRPEARREAAMVKRFARQLEVSHRMLRWTEPKPTTGIPEAARLARYRLLARAARQAGA 132 Query: 123 THILTAHTRDDQAETLLMRMLRGSGVAGLSAMARETERDGVLLTRPLLDVSKAQLIATLK 182 +H+LTAHTRDDQAET+LMR+LRGSG+ GL+AMA + RDG+LL RPLL++SKA+L+ATL+ Sbjct: 133 SHVLTAHTRDDQAETVLMRLLRGSGIVGLAAMAPVSARDGLLLARPLLEISKARLVATLR 192 Query: 183 KARIGFADDPTNRDRSFTRPRLRALMPMLAGGGGATR 219 A I FADDPTN D ++TRPRLRALMP LA GG +R Sbjct: 193 SAGIEFADDPTNHDPAYTRPRLRALMPALAAEGGDSR 229 >ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] Length = 371 Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 152/218 (69%), Positives = 176/218 (80%) Query: 6 SAIPARDAKRLFAGLAGAPAILLAVSGGPDSVALMWLAARWRRALAQGPRLVAVTVDHGL 65 S I + KRLF+ + A++LAVSGGPDSVALMWLAARWRRA+ +GP LVAVTVDH L Sbjct: 20 SPIADTETKRLFSDWKASRALVLAVSGGPDSVALMWLAARWRRAMKRGPDLVAVTVDHAL 79 Query: 66 RPEAAREARDVKRLARSLDLPHHTLRWTGPKPGTGVPAAARAARYRLLAQAARKHGATHI 125 R EAAREAR VK+LA+SL +PH TLRWTGPKP TG+PAAAR ARY LL +AAR GA+H+ Sbjct: 80 RREAAREARQVKQLAKSLSIPHRTLRWTGPKPATGLPAAAREARYALLFKAARSLGASHV 139 Query: 126 LTAHTRDDQAETLLMRMLRGSGVAGLSAMARETERDGVLLTRPLLDVSKAQLIATLKKAR 185 LT HT DDQAET+LMR+ RGSG+AGLSAM+RET RDG +L RPLL+V KA+LIATLKKA+ Sbjct: 140 LTGHTLDDQAETVLMRISRGSGIAGLSAMSRETMRDGFVLVRPLLNVPKARLIATLKKAK 199 Query: 186 IGFADDPTNRDRSFTRPRLRALMPMLAGGGGATRGTWR 223 I +A+DPTNRD FTRPRLRALMP LA G R R Sbjct: 200 IDYAEDPTNRDLGFTRPRLRALMPALAEEGCDARNLSR 237 >ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14] gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter hamburgensis X14] Length = 345 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/233 (66%), Positives = 182/233 (78%) Query: 1 MPDDQSAIPARDAKRLFAGLAGAPAILLAVSGGPDSVALMWLAARWRRALAQGPRLVAVT 60 + DD S I A +AK LFA A A++L VSGGPDS ALMWLAARWRRA+ +GP L+AVT Sbjct: 2 IEDDASPISATEAKLLFADWKAAHALVLGVSGGPDSTALMWLAARWRRAMTRGPDLIAVT 61 Query: 61 VDHGLRPEAAREARDVKRLARSLDLPHHTLRWTGPKPGTGVPAAARAARYRLLAQAARKH 120 VDHGLRP +AREARDVK LA SL + H T+RW+G KP +G+PAAAR ARYRLLA+ AR + Sbjct: 62 VDHGLRPGSAREARDVKHLATSLGMRHRTVRWSGAKPKSGLPAAARDARYRLLAKTARAN 121 Query: 121 GATHILTAHTRDDQAETLLMRMLRGSGVAGLSAMARETERDGVLLTRPLLDVSKAQLIAT 180 GA H+ TAHTRDDQAET+LMR+ RGSG+ GLSAMARET RDG +L RPLL VSK++LIAT Sbjct: 122 GALHVFTAHTRDDQAETVLMRISRGSGITGLSAMARETMRDGFILARPLLHVSKSRLIAT 181 Query: 181 LKKARIGFADDPTNRDRSFTRPRLRALMPMLAGGGGATRGTWRGLPQGSRAPT 233 L+KA I +A+DPTNRD SFTRPRLRALMP LA G R R + +RA T Sbjct: 182 LEKAGIAYAEDPTNRDVSFTRPRLRALMPALAEEGCDVRNLARLASRLARANT 234