BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0216.0007.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004618697.1| Fe3+ ABC transporter permease with duplicate... 599 e-169 ref|NP_881179.1| ABC transport protein, solute-binding protein [... 401 e-109 ref|NP_888613.1| ABC transporter substrate-binding protein [Bord... 399 e-108 ref|NP_884850.1| ABC transport protein, solute-binding protein [... 396 e-108 ref|YP_004154434.1| binding-protein-dependent transport systems ... 354 3e-95 >ref|YP_004618697.1| Fe3+ ABC transporter permease with duplicated domains [Ramlibacter tataouinensis TTB310] gb|AEG92678.1| candidate ABC type Fe3+ transport system, permease component with duplicated domains [Ramlibacter tataouinensis TTB310] Length = 572 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 328/535 (61%), Positives = 404/535 (75%), Gaps = 7/535 (1%) Query: 12 WLAVFAFTDKSRHPTLQNFVTLFSNPDFLDPLLTTAIIATTSALICCIVAAPISWLVSRT 71 WLA +A DK PTL NF L S+ P + + +A L+ ++A P++WLVSRT Sbjct: 43 WLAYYALVDKDGQPTLANFAALVSDATLRKPYVLASGMALGVGLLSVVIATPLAWLVSRT 102 Query: 72 DMPGRQTIRALVTASFVTPPFLGAVAWELLAAPNSGLLNQLYRLFAG-EDADA-LFNIYS 129 D+PGR+ +RALVTASFVTPPFLGA+AWE+LAAPNSGL+N +R AG + DA L NIYS Sbjct: 103 DLPGRRAVRALVTASFVTPPFLGAIAWEILAAPNSGLINVFWRWAAGGQPYDAPLVNIYS 162 Query: 130 MTGIIFVISCYTFPFVFVLVANALDTMPGELEDASAILGGNAWTTARRVTIPLALPALVA 189 G++F I+CYTFP+VF LVAN LD +P +LEDASAILGG AWTT R++T PL LPA++A Sbjct: 163 FGGLVFAIACYTFPYVFTLVANGLDRVPADLEDASAILGGRAWTTLRKITFPLVLPAVLA 222 Query: 190 GALIAFLQAMTLFGSPAILALPAGFHTMTTKIWSLFQYPPKLELAAAAAVPLLVLTILLL 249 GALIA LQA+T+FGSPAILALPAGFH +TTKIWSLFQ+PPK LAAAAA+PLL++T+LLL Sbjct: 223 GALIAILQALTMFGSPAILALPAGFHVITTKIWSLFQFPPKPGLAAAAALPLLLITVLLL 282 Query: 250 QGQKALLGRRGYSVIGGKYGAPRRVELRGWRWAALGFCLLVLLNPVFLPYLALLNAAFSP 309 QG+ +LGR+GY+V+GGK GAPR L W A F VL V LPY ALL A + Sbjct: 283 QGKSWILGRKGYTVLGGKSGAPRISRLGPWMPVAALFAFAVLSLTVLLPYAALLKTALTK 342 Query: 310 NATTLVTPSTATLHNIVFVFTELSSTQLALKNTVILGTATATIGTILALVIAYVTTRKVI 369 N TLHN FVF E S+T+LA+ NT +LG ATATIGT +AL+ AY+ +R + Sbjct: 343 NGV-----EGLTLHNFHFVFFEFSATRLAMYNTFVLGFATATIGTGIALMAAYMVSRSPV 397 Query: 370 AGHRVLGFLATAPVAVPGIVLGVGLFLSYTRPPFVLYGTLWILLLAFLTINLPSAYQQLQ 429 G LG LATAPVA+PGIVLGVGLFL+Y+ P +LYGTLWILL+AFLTI +P+ YQQ+Q Sbjct: 398 RGAGALGLLATAPVAIPGIVLGVGLFLTYSHPSLMLYGTLWILLIAFLTIEMPAGYQQMQ 457 Query: 430 AAFSTIHPELEEASRILGATRLQALRQITAPLLRTGVIATWCFIFIGVMRELSAAIVLFT 489 AAF IHPELEEASRILGA+R++ LR ITAPLLRT VIATWCF+FIG +RELSA I+L T Sbjct: 458 AAFHGIHPELEEASRILGASRMKTLRLITAPLLRTSVIATWCFVFIGTIRELSATILLTT 517 Query: 490 SQTKVLSVLIYDLNEGGDLAAIAVLGIAMLVITFAVVLAVNRIPMSGGNAGARLR 544 + TK++SV+IYDLNE GD+ AI+VLGI +L ++F VV NR+P+ GG LR Sbjct: 518 ANTKLVSVIIYDLNESGDMGAISVLGIMLLAVSFTVVFIANRLPLLGGQRLPALR 572 >ref|NP_881179.1| ABC transport protein, solute-binding protein [Bordetella pertussis Tohama I] emb|CAE42827.1| ABC transport protein, solute-binding protein [Bordetella pertussis Tohama I] gb|AEE67790.1| ABC transport protein, solute-binding protein [Bordetella pertussis CS] Length = 583 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 228/509 (44%), Positives = 322/509 (63%), Gaps = 3/509 (0%) Query: 20 DKSRHPTLQNFVTLFSNPDFLDPLLTTAIIATTSALICCIVAAPISWLVSRTDMPGRQTI 79 D + +L N++ +F+ P+ ++P+L + ++A ++A+I + P++WLVSRTDMPGR I Sbjct: 54 DLTGQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLI 113 Query: 80 RALVTASFVTPPFLGAVAWELLAAPNSGLLNQLYRLFAGEDADALFNIYSMTGIIFVISC 139 R LV A+F+TP F+GA+ W LLAAPNSG LN R + G D+ NIYSM G +FV + Sbjct: 114 RVLVLAAFITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSP--LNIYSMWGAVFVCAV 171 Query: 140 YTFPFVFVLVANALDTMPGELEDASAILGGNAWTTARRVTIPLALPALVAGALIAFLQAM 199 YT PF F +VA ALD M ELEDASA+LGG T R VT+PL +PA+VAG +++F+Q M Sbjct: 172 YTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGM 231 Query: 200 TLFGSPAILALPAGFHTMTTKIWSLFQ-YPPKLELAAAAAVPLLVLTILLLQGQKALLGR 258 TLFG PA L PA +TTK+ +Q +PP+L LAAA +PLL++T L ++ +LGR Sbjct: 232 TLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGR 291 Query: 259 RGYSVIGGKYGAPRRVELRGWRWAALGFCLLVLLNPVFLPYLALLNAAFSPNATTLVTPS 318 R Y +IGGK R V L WRW AL LLV VFLPY +L + S + Sbjct: 292 RQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWD 351 Query: 319 TATLHNIVFVFTELSSTQLALKNTVILGTATATIGTILALVIAYVTTRKVIAGHRVLGFL 378 TLH + + TQ A+ N+++ T AT+ +L +V+AY+ RK+ G LG Sbjct: 352 NLTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGAT 411 Query: 379 ATAPVAVPGIVLGVGLFLSYTRPPFVLYGTLWILLLAFLTINLPSAYQQLQAAFSTIHPE 438 A+ P+ +PGIVL VG F ++T+P + LYGT +L+LAF+T LP AY A TI P+ Sbjct: 412 ASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPD 471 Query: 439 LEEASRILGATRLQALRQITAPLLRTGVIATWCFIFIGVMRELSAAIVLFTSQTKVLSVL 498 LE ASRILGA ++ +IT PL++ G+++ W +FI VMRELS A+ L T QT V++ L Sbjct: 472 LERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTL 531 Query: 499 IYDLNEGGDLAAIAVLGIAMLVITFAVVL 527 IY+ +GG+ A+ +L+ T +V+ Sbjct: 532 IYNYKDGGNYEAVCATSNVLLLGTILIVM 560 >ref|NP_888613.1| ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE32566.1| ABC transport protein, solute-binding protein [Bordetella bronchiseptica RB50] Length = 579 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 226/509 (44%), Positives = 321/509 (63%), Gaps = 3/509 (0%) Query: 20 DKSRHPTLQNFVTLFSNPDFLDPLLTTAIIATTSALICCIVAAPISWLVSRTDMPGRQTI 79 D + +L N++ +F+ P+ ++P+L + ++A ++A+I + P++WLVSRTDMPGR + Sbjct: 50 DLTGQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLV 109 Query: 80 RALVTASFVTPPFLGAVAWELLAAPNSGLLNQLYRLFAGEDADALFNIYSMTGIIFVISC 139 R LV A+F+TP F+GA+ W LLAAPNSG LN R + G D+ NIYSM G +FV + Sbjct: 110 RVLVLAAFITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSP--LNIYSMWGAVFVCAV 167 Query: 140 YTFPFVFVLVANALDTMPGELEDASAILGGNAWTTARRVTIPLALPALVAGALIAFLQAM 199 YT PF F +VA ALD M ELEDASA+LGG T R VT+PL +PA+VAG +++F+Q M Sbjct: 168 YTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGM 227 Query: 200 TLFGSPAILALPAGFHTMTTKIWSLFQ-YPPKLELAAAAAVPLLVLTILLLQGQKALLGR 258 TLFG PA L PA +TTK+ +Q +PP+L LAAA +PLL++T L ++ +LGR Sbjct: 228 TLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGR 287 Query: 259 RGYSVIGGKYGAPRRVELRGWRWAALGFCLLVLLNPVFLPYLALLNAAFSPNATTLVTPS 318 R Y +IGGK R V L WRW AL LLV VFLPY +L + S + Sbjct: 288 RQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWD 347 Query: 319 TATLHNIVFVFTELSSTQLALKNTVILGTATATIGTILALVIAYVTTRKVIAGHRVLGFL 378 TLH + + TQ A+ N+++ T AT+ +L +V+AY+ RK+ G LG Sbjct: 348 NLTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGAT 407 Query: 379 ATAPVAVPGIVLGVGLFLSYTRPPFVLYGTLWILLLAFLTINLPSAYQQLQAAFSTIHPE 438 A+ P+ +PGIVL VG F ++T+P + LYGT +L+LAF+ LP AY A TI P+ Sbjct: 408 ASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVATFLPIAYSHGGAIIKTISPD 467 Query: 439 LEEASRILGATRLQALRQITAPLLRTGVIATWCFIFIGVMRELSAAIVLFTSQTKVLSVL 498 LE ASRILGA ++ +IT PL++ G+++ W +FI VMRELS A+ L T QT V++ L Sbjct: 468 LERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTL 527 Query: 499 IYDLNEGGDLAAIAVLGIAMLVITFAVVL 527 IY+ +GG+ A+ +L+ T +V+ Sbjct: 528 IYNYKDGGNYEAVCATSNVLLLGTILIVM 556 >ref|NP_884850.1| ABC transport protein, solute-binding protein [Bordetella parapertussis 12822] emb|CAE37919.1| ABC transport protein, solute-binding protein [Bordetella parapertussis] Length = 522 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 317/501 (63%), Gaps = 3/501 (0%) Query: 28 QNFVTLFSNPDFLDPLLTTAIIATTSALICCIVAAPISWLVSRTDMPGRQTIRALVTASF 87 N++ +F+ P+ ++P+L + ++A ++A+I + P++WLVSRTDMPGR +R LV A+F Sbjct: 1 MNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLVRVLVLAAF 60 Query: 88 VTPPFLGAVAWELLAAPNSGLLNQLYRLFAGEDADALFNIYSMTGIIFVISCYTFPFVFV 147 +TP F+GA+ W LLAAPNSG LN R + G D+ NIYSM G +FV + YT PF F Sbjct: 61 ITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSP--LNIYSMWGAVFVCAVYTVPFTFT 118 Query: 148 LVANALDTMPGELEDASAILGGNAWTTARRVTIPLALPALVAGALIAFLQAMTLFGSPAI 207 +VA ALD M ELEDASA+LGG T R VT+PL +PA+VAG +++F+Q MTLFG PA Sbjct: 119 IVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAF 178 Query: 208 LALPAGFHTMTTKIWSLFQ-YPPKLELAAAAAVPLLVLTILLLQGQKALLGRRGYSVIGG 266 L PA +TTK+ +Q +PP+L LAAA +PLL++T L ++ +LGRR Y +IGG Sbjct: 179 LLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGRRQYVMIGG 238 Query: 267 KYGAPRRVELRGWRWAALGFCLLVLLNPVFLPYLALLNAAFSPNATTLVTPSTATLHNIV 326 K R V L WRW AL LLV VFLPY +L + S + TLH Sbjct: 239 KARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYR 298 Query: 327 FVFTELSSTQLALKNTVILGTATATIGTILALVIAYVTTRKVIAGHRVLGFLATAPVAVP 386 + + TQ A+ N+++ T AT+ +L +V+AY+ RK+ G LG A+ P+ +P Sbjct: 299 WAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIP 358 Query: 387 GIVLGVGLFLSYTRPPFVLYGTLWILLLAFLTINLPSAYQQLQAAFSTIHPELEEASRIL 446 GIVL VG F ++T+P + LYGT +L+LAF+ LP AY A TI P+LE ASRIL Sbjct: 359 GIVLSVGFFSAFTQPFYGLYGTGALLVLAFVATFLPIAYSHGGAIIKTISPDLERASRIL 418 Query: 447 GATRLQALRQITAPLLRTGVIATWCFIFIGVMRELSAAIVLFTSQTKVLSVLIYDLNEGG 506 GA ++ +IT PL++ G+++ W +FI VMRELS A+ L T QT V++ LIY+ +GG Sbjct: 419 GAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLIYNYKDGG 478 Query: 507 DLAAIAVLGIAMLVITFAVVL 527 + A+ +L+ T +V+ Sbjct: 479 NYEAVCATSNVLLLGTILIVM 499 >ref|YP_004154434.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU36323.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 581 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 203/518 (39%), Positives = 315/518 (60%), Gaps = 2/518 (0%) Query: 17 AFTDKSRHPTLQNFVTLFSNPDFLDPLLTTAIIATTSALICCIVAAPISWLVSRTDMPGR 76 +F+ TL+N+ + L LL + + ++ + P++ VSRT+MP R Sbjct: 54 SFSSADGGATLRNYTSALGRSRNLQALLNSLYLGGAVTVLALALGVPLALAVSRTNMPCR 113 Query: 77 QTIRALVTASFVTPPFLGAVAWELLAAPNSGLLNQLY-RLFAGEDAD-ALFNIYSMTGII 134 V A+FV P FLGA+AW LLA PN+G LN+L+ +F G D FNIYS G+ Sbjct: 114 NLTHMGVLAAFVMPNFLGAIAWILLAGPNAGWLNRLWLEVFGGAGDDRGPFNIYSFWGLA 173 Query: 135 FVISCYTFPFVFVLVANALDTMPGELEDASAILGGNAWTTARRVTIPLALPALVAGALIA 194 FVI+ YTFP ++V +ALD + ELEDA++I G + T RVT+PL +P++V A++ Sbjct: 174 FVIALYTFPLIYVFTKSALDLISTELEDAASIHGAGKFRTLTRVTLPLVMPSIVGAAILI 233 Query: 195 FLQAMTLFGSPAILALPAGFHTMTTKIWSLFQYPPKLELAAAAAVPLLVLTILLLQGQKA 254 FL+++ L+G+PA++A+PAG + TT+I S F+YP ++E AAA ++P+LVLT+++L Q+ Sbjct: 234 FLESVALYGTPALIAIPAGINLATTQIVSFFEYPLRVEQAAAFSMPILVLTVVMLWVQRR 293 Query: 255 LLGRRGYSVIGGKYGAPRRVELRGWRWAALGFCLLVLLNPVFLPYLALLNAAFSPNATTL 314 LL R+G+ + GK G R ++ W+W L + LV L V +P L+ A+ S Sbjct: 294 LLSRKGFVSVSGKGGERRPFDIGWWKWPLLAYAALVSLLTVVMPLAILVLASLSKAWGRG 353 Query: 315 VTPSTATLHNIVFVFTELSSTQLALKNTVILGTATATIGTILALVIAYVTTRKVIAGHRV 374 VT TL N +F + + + A+ NTV+ ATA + ++ L +AY R++ V Sbjct: 354 VTKGNLTLANYYDIFFQQLTVREAIVNTVLYSGATALVCVLMGLCVAYAVQRRITPWPGV 413 Query: 375 LGFLATAPVAVPGIVLGVGLFLSYTRPPFVLYGTLWILLLAFLTINLPSAYQQLQAAFST 434 + FLA APVAVPG++L +GL+ +Y PPF LYGT ++++AF T LP A AA + Sbjct: 414 VQFLALAPVAVPGLILAIGLYAAYAGPPFSLYGTGALIVVAFTTRFLPIAVTACAAAVRS 473 Query: 435 IHPELEEASRILGATRLQALRQITAPLLRTGVIATWCFIFIGVMRELSAAIVLFTSQTKV 494 ++PELEEA R+LG R+ L ++ PLL+T ++ + +F+ +ELS A+ L ++V Sbjct: 474 LNPELEEAVRVLGGGRITVLARVVFPLLKTTLVGVFILVFVICTKELSTAVFLTGPASRV 533 Query: 495 LSVLIYDLNEGGDLAAIAVLGIAMLVITFAVVLAVNRI 532 +SVL DL+E G+ +A +G+ +++IT VV A RI Sbjct: 534 VSVLTLDLSEQGNYETLAAMGVVLVMITTLVVAAGMRI 571