BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0216.0006.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004618696.1| Fe3+ ABC transporter periplasmic protein [Ra... 374 e-101 ref|YP_003692470.1| family 1 extracellular solute-binding protei... 160 3e-37 ref|YP_004154433.1| family 1 extracellular solute-binding protei... 150 3e-34 ref|NP_881180.1| hypothetical protein BP2553 [Bordetella pertuss... 136 4e-30 ref|NP_888612.1| iron ABC transporter substrate-binding protein ... 136 5e-30 >ref|YP_004618696.1| Fe3+ ABC transporter periplasmic protein [Ramlibacter tataouinensis TTB310] gb|AEG92677.1| candidate ABC type Fe3+ transport system, periplasmic component [Ramlibacter tataouinensis TTB310] Length = 346 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/327 (57%), Positives = 230/327 (70%), Gaps = 3/327 (0%) Query: 27 ARAAAPEPVAITPDLVAAATKEGKLVFYSSMDLPVGERLGKAFEAAYPGITVQIERSGSE 86 A + AP TP LVAAA KEGK+V+YS+ D+ V E+L +AFEA YPG+ VQ+ERSG+E Sbjct: 20 AHSQAPAAYDATPQLVAAAQKEGKVVWYSATDVQVAEKLARAFEAKYPGVKVQVERSGAE 79 Query: 87 RLFQRVAQEFDSNIHAADVVNSADASHFIPWKKSGWLMPFVPEDVAKHFPDNYRDPDGMA 146 R+FQR+ QE+ S IHAADVV ++DA HFI +KK GWL P VP DVAKH+ +Y+D DG Sbjct: 80 RIFQRINQEYGSKIHAADVVETSDAVHFIYFKKQGWLTPAVPVDVAKHWGKDYKDADGQY 139 Query: 147 VTTRLWLSSIAYNTNLVKAEDAPKSFADLLDPKWVGKMVKGHPAYSGTIMTTTFQIVRE- 205 R LS IAYNT LV E APKS ADLLDPKW K+VK HP YSGTIMT T + + Sbjct: 140 AAYRAHLSVIAYNTKLVPKEQAPKSHADLLDPKWNSKIVKAHPGYSGTIMTGTQALSQSP 199 Query: 206 LGWPYLEKLAKQRVMQVQSSTDPPKKLSLGERAVMADGNEYGIVLLKEAGQPVEPVYPTE 265 LGW YLE+L KQ++MQVQSST+PPKKL+ GER VMADGNEY + +LKE+G P+EPVY E Sbjct: 200 LGWKYLEQLGKQKIMQVQSSTEPPKKLAAGERPVMADGNEYNVFILKESGVPIEPVYAAE 259 Query: 266 GTPTISGPTGIFAAAPHPNAARLFQAWLHTRETQQFFVDFTGQYSLHAQVQPKAGRRKLS 325 GTP + G I AP+PNAARLF ++ TR+ QQ D G S H +V+ KAGR LS Sbjct: 260 GTPIVVGNAAIMKNAPNPNAARLFYHFMFTRDAQQLNSDVGGLRSFHPEVKEKAGRTPLS 319 Query: 326 DIKLMKEDPAGVEAMTEEIKTRYARLF 352 IKL+ DP ++ + IK +Y F Sbjct: 320 QIKLLNSDPNKLD--PDNIKKKYEEYF 344 >ref|YP_003692470.1| family 1 extracellular solute-binding protein [Starkeya novella DSM 506] gb|ADH87851.1| extracellular solute-binding protein family 1 [Starkeya novella DSM 506] Length = 345 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 164/338 (48%), Gaps = 8/338 (2%) Query: 16 ALAVGTVFASPARAAAPEPVAITPDLVAAATKEGKLVFYSSMDLPVGERLGKAFEAAYPG 75 A G + S A AA+ E V + A A EGKLV+Y+S + L FE G Sbjct: 16 AAGAGLLIGSFAFAASAEEVDM-----AKAKAEGKLVWYTSTAIGQANNLALMFEKQ-TG 69 Query: 76 ITVQIERSGSERLFQRVAQEFDSNIHAADVVNSADASHFIPWKKSGWLMPFVPEDVAKHF 135 I V++ RSG + +R QE + AADV+ +D + + G + F P+D K Sbjct: 70 IKVELFRSGGSAILRRFMQEASAGKIAADVMTMSDPAAADQLSEKGTFVAFKPKDFDK-I 128 Query: 136 PDNYRDPDGMAVTTRLWLSSIAYNTNLVKAEDAPKSFADLLDPKWVGKMVKGHPAYSGTI 195 + R+ DG + RL +I + V + PK + DL D K+ GK+V P+++ Sbjct: 129 TETARNKDGYWIAQRLNAITIYMRGDKVPPAERPKKWTDLTDAKYDGKLVMTDPSFTSVQ 188 Query: 196 MTTTFQIVRELGWPYLEKLAKQRVMQVQSSTDPPKKLSLGERAVMADGNEYGIVLLKEAG 255 +TT + + GW Y EKL +M VQ + + GER + + I + G Sbjct: 189 LTTVGVLADKYGWDYYEKLNDGDIMIVQGNQQVADNIKRGERLIAVGALDVYIAADRRNG 248 Query: 256 QPVEPVYPTEGTPTISGPTGIFAAAPHPNAARLFQAWLHTRETQQFFVDFTGQYSLHAQV 315 +YP +GT I PTGI PHPNAA+ F ++ + E Q+ F + TG+YS + Sbjct: 249 HDFVSIYPEDGTLLIPSPTGIIKGGPHPNAAKAFAEFMISPEAQKTFPE-TGEYSARVDM 307 Query: 316 QPKAGRRKLSDIKLMKEDPAGVEAMTEEIKTRYARLFK 353 P AG K+ +IKLM D +E EIK ++ +F+ Sbjct: 308 APPAGNPKVDEIKLMPVDYEKLETQAAEIKEKFNDIFR 345 >ref|YP_004154433.1| family 1 extracellular solute-binding protein [Variovorax paradoxus EPS] gb|ADU36322.1| extracellular solute-binding protein family 1 [Variovorax paradoxus EPS] Length = 351 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 155/301 (51%), Gaps = 12/301 (3%) Query: 41 LVAAATKEGKLVFYSSMDLPV--GERLGKAFEAAYPGITVQIERSGSERLFQRVAQEFDS 98 L AA KEG+L +Y + LP E + + F A YPG+ V + R+ ++ FQR+ Q+ + Sbjct: 36 LHEAAKKEGELTWYI-VYLPSEDAELMSRTFTARYPGVKVNVVRTTAQVAFQRLNQDLKA 94 Query: 99 NIHAADVVNSADASHFIPWKKSGWLMPFVPEDVA---KHFPDNYRDPDGMAVTTRLWLSS 155 DV +S D +H++ KK LM +VP A K + DPDG + + Sbjct: 95 KTANCDVFSSTDIAHYLDLKKRKLLMKYVPAASATMDKRLQN--LDPDGYYHVASVAMVG 152 Query: 156 IAYNTNLVKAEDAPKSFADLLDPKWVGKMVKGHPAYSGTIMTTTFQIVRELGWPYLEKLA 215 + YNT VKA DAPKS+ DL+DPKW G GHP +SG + ++ + G + +KLA Sbjct: 153 LVYNTQKVKAADAPKSWNDLVDPKWRGLASVGHPGFSGFVGVWAIEMRKLYGDGWFKKLA 212 Query: 216 KQRVMQVQSSTDPPKKLSLGERAVMADGNEYGIVLLKEAGQPVEPVYPTEGTPTISGPTG 275 + +S D ++ GER++ A G ++ E G P+ V P EG + P+ Sbjct: 213 ANKPQVGRSIIDTVTTVTSGERSIGA-GPINLAAMMAEKGNPLAIVAPKEGPVLMLSPSA 271 Query: 276 IFAAAPHPNAARLFQAW-LHTRETQQFFVDFTGQYSLHAQVQPKAGRRKLSDIKL-MKED 333 + A APHPNA++LF W L + + + +D G A +P+ G L D K ++ D Sbjct: 272 VMANAPHPNASKLFMEWLLGSEDVDKLSIDRFG-VPKRAGAKPRPGVLGLDDSKTALRPD 330 Query: 334 P 334 P Sbjct: 331 P 331 >ref|NP_881180.1| hypothetical protein BP2553 [Bordetella pertussis Tohama I] emb|CAE42828.1| putative exported protein [Bordetella pertussis Tohama I] gb|AEE67791.1| hypothetical protein BPTD_2513 [Bordetella pertussis CS] Length = 345 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 152/304 (50%), Gaps = 19/304 (6%) Query: 6 SRRDVLQ----GSAALAVGTVFASPARAAAPEPVAITPDLVAAATKEGKL-VFYSSMDLP 60 SRRD+L+ SAALA G+VF P RA P L AA KEG L +++ S + Sbjct: 5 SRRDMLRLGVSASAALA-GSVFL-PVRAQ-DNP------LYEAARKEGALNLYWGSYEQK 55 Query: 61 VGERLGKAFEAAYPGITVQIERSGSERLFQRVAQEFDSNIHAADVVNSADASHFIPWKKS 120 E + AF YPGI V + R GS+ ++ R+ E +N D + + + H+ KK Sbjct: 56 SIEDIRDAFVKKYPGIQVNLLRQGSQTVYTRLRLELQNNAANCDSLGTTNLLHYTELKKI 115 Query: 121 GWLMPFVPEDVAKHFPDNYR--DPDGMAVTTRLWLSSIAYNTNLVKAEDAPKSFADLLDP 178 LM + P A+H P+ +R DPD + ++SI + + K + P+S+ LLDP Sbjct: 116 NALMAYRPTG-AEHLPEAFRGLDPDNTFHVGAISITSINFQSQ--KVPNPPESWQALLDP 172 Query: 179 KWVGKMVKGHPAYSGTIMTTTFQIVRELGWPYLEKLAKQRVMQVQSSTDPPKKLSLGERA 238 W GK+ G PA SG + + + G + +K A Q+ QS+ D + GER Sbjct: 173 AWAGKITVGSPASSGDVAHWALAMRLKYGDDFFKKFAAQKPKVGQSNVDTVTDILAGERV 232 Query: 239 VMADGNEYGIVLLKEAGQPVEPVYPTEGTPTISGPTGIFAAAPHPNAARLFQAWLHTRET 298 V A + K AGQPV+ PT+ G T I A APHPNAA+LF +L++ E Sbjct: 233 VGAAAPFSYSLTQKAAGQPVDVKVPTDDAILNLGLTAIPAKAPHPNAAKLFTDFLYSTEV 292 Query: 299 QQFF 302 Q Sbjct: 293 SQIL 296 >ref|NP_888612.1| iron ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE32565.1| putative extracellular solute-binding protein [Bordetella bronchiseptica RB50] Length = 345 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 152/304 (50%), Gaps = 19/304 (6%) Query: 6 SRRDVLQ----GSAALAVGTVFASPARAAAPEPVAITPDLVAAATKEGKL-VFYSSMDLP 60 SRRD+L+ SAALA G+VF P RA P L AA KEG L +++ S + Sbjct: 5 SRRDMLRLGVSASAALA-GSVFL-PVRAQ-DNP------LYEAARKEGALNLYWGSYEQK 55 Query: 61 VGERLGKAFEAAYPGITVQIERSGSERLFQRVAQEFDSNIHAADVVNSADASHFIPWKKS 120 E + AF YPGI V + R GS+ ++ R+ E +N D + + + H+ KK Sbjct: 56 SIEDIRDAFVKKYPGIQVNLLRQGSQTVYTRLRLELQNNAANCDSLGTTNLLHYTELKKI 115 Query: 121 GWLMPFVPEDVAKHFPDNYR--DPDGMAVTTRLWLSSIAYNTNLVKAEDAPKSFADLLDP 178 LM + P A+H P+ +R DPD + ++SI + + K + P+S+ LLDP Sbjct: 116 NALMAYRPTG-AEHLPEAFRGLDPDNTFHVGAISITSINFQSQ--KVPNPPESWQALLDP 172 Query: 179 KWVGKMVKGHPAYSGTIMTTTFQIVRELGWPYLEKLAKQRVMQVQSSTDPPKKLSLGERA 238 W GK+ G PA SG + + + G + +K A Q+ QS+ D + GER Sbjct: 173 AWAGKITVGSPASSGDVAHWALAMRLKYGDGFFKKFAAQKPKVGQSNVDTVTDILAGERV 232 Query: 239 VMADGNEYGIVLLKEAGQPVEPVYPTEGTPTISGPTGIFAAAPHPNAARLFQAWLHTRET 298 V A + K AGQPV+ PT+ G T I A APHPNAA+LF +L++ E Sbjct: 233 VGAAAPFSYSLTQKAAGQPVDVKVPTDDAILNLGLTAIPAKAPHPNAAKLFTDFLYSTEV 292 Query: 299 QQFF 302 Q Sbjct: 293 SQIL 296