BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0216.0001.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_534529.1| nuclease [Rhodopseudomonas palustris BisB18] >g... 390 e-107 ref|YP_001208785.1| hypothetical protein BRADO6984 [Bradyrhizobi... 378 e-103 ref|NP_767012.1| succinoglycan biosynthesis protein [Bradyrhizob... 377 e-103 ref|YP_001236732.1| putative nuclease-like protein [Bradyrhizobi... 368 e-100 ref|YP_567921.1| nuclease [Rhodopseudomonas palustris BisB5] >gi... 365 2e-99 >ref|YP_534529.1| nuclease [Rhodopseudomonas palustris BisB18] gb|ABD90210.1| nuclease (SNase-like) [Rhodopseudomonas palustris BisB18] Length = 241 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/236 (77%), Positives = 208/236 (88%), Gaps = 1/236 (0%) Query: 6 LTAGLLLSLPTLAVAADITGVPKIRDGDQLMIGSVRIRLAGVDAPSTDQLCLNTKGERWT 65 L LLLS P LA AAD++GVPKIR+GDQ+ IGS RIRL G+DAPS DQLCLN KGERW+ Sbjct: 7 LAIALLLS-PVLAEAADVSGVPKIREGDQVTIGSSRIRLGGIDAPSLDQLCLNPKGERWS 65 Query: 66 CGVAARDELIKHAGSKSWTCHARSVDRRGRTIARCEVDGEDIQKWLVASGWALAYTRASH 125 CGVAARDEL++HAGSKSW+CH + DR GR++ RCEV+GEDIQKWLV SGWALAY + SH Sbjct: 66 CGVAARDELVRHAGSKSWSCHIQRTDRFGRSVGRCEVEGEDIQKWLVQSGWALAYAKISH 125 Query: 126 DYEADEKAAREAKAGMWQGAFIAPWDWRVRNKKTTVLGAVKPPDGANAILLASASGPVAP 185 DY+AD+K AR+AKAG+W GAFIAPWDWRVRNK TT+LGAVKPP ANAILLASASGPVAP Sbjct: 126 DYDADQKVARDAKAGLWAGAFIAPWDWRVRNKATTILGAVKPPPTANAILLASASGPVAP 185 Query: 186 SPDCTIKGNVNRSGECIFHQRTSRWYAKIEMKISKGTRWFCSVEEAEAAGCRETRR 241 SP+CTIKGNVNRSG CI+H+ SRWYAKI+M +SKGTRWFCSVEEAEAAGCRETRR Sbjct: 186 SPECTIKGNVNRSGHCIYHRPQSRWYAKIQMHVSKGTRWFCSVEEAEAAGCRETRR 241 >ref|YP_001208785.1| hypothetical protein BRADO6984 [Bradyrhizobium sp. ORS 278] emb|CAL80570.1| putative Staphylococcus nuclease-like protein (SNase-like) [Bradyrhizobium sp. ORS 278] Length = 241 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/227 (77%), Positives = 197/227 (86%) Query: 15 PTLAVAADITGVPKIRDGDQLMIGSVRIRLAGVDAPSTDQLCLNTKGERWTCGVAARDEL 74 P++A AADITG+ K+R+ D ++IG+ R+RL G+DAPS DQLCLN +GERWTCG AARDEL Sbjct: 15 PSVASAADITGIAKVREADSVVIGTTRVRLGGIDAPSVDQLCLNQQGERWTCGAAARDEL 74 Query: 75 IKHAGSKSWTCHARSVDRRGRTIARCEVDGEDIQKWLVASGWALAYTRASHDYEADEKAA 134 IKHA KSW CH RS+DRRGR +ARC+VDGEDIQKWLV SGWALAY SHDYE DE A Sbjct: 75 IKHADGKSWVCHPRSIDRRGRQVARCDVDGEDIQKWLVRSGWALAYRTVSHDYEPDEAEA 134 Query: 135 REAKAGMWQGAFIAPWDWRVRNKKTTVLGAVKPPDGANAILLASASGPVAPSPDCTIKGN 194 R AKAGMWQGAFIAPWDWRVRNKKTT+LGA KPP+GA ILLASASGPVAPSPDCTIKGN Sbjct: 135 RAAKAGMWQGAFIAPWDWRVRNKKTTILGATKPPEGARNILLASASGPVAPSPDCTIKGN 194 Query: 195 VNRSGECIFHQRTSRWYAKIEMKISKGTRWFCSVEEAEAAGCRETRR 241 VN +GECI+H SRWYA+I+M ++KGTRWFCSVEEAEAAGCRETRR Sbjct: 195 VNGAGECIYHTPKSRWYAQIKMHVAKGTRWFCSVEEAEAAGCRETRR 241 >ref|NP_767012.1| succinoglycan biosynthesis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45637.1| blr0372 [Bradyrhizobium japonicum USDA 110] Length = 240 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/241 (77%), Positives = 213/241 (88%), Gaps = 1/241 (0%) Query: 1 MFKTLLTAGLLLSLPTLAVAADITGVPKIRDGDQLMIGSVRIRLAGVDAPSTDQLCLNTK 60 M + L A LL+ PTLA AADITG K+RDGD ++IG+ R+RL G+DAPS+DQLCLNT Sbjct: 1 MLRKFLLALSLLA-PTLAQAADITGTAKVRDGDSVVIGNTRVRLGGIDAPSSDQLCLNTH 59 Query: 61 GERWTCGVAARDELIKHAGSKSWTCHARSVDRRGRTIARCEVDGEDIQKWLVASGWALAY 120 ERWTCG+AARDEL K+ K+W CHAR++DRRGRT+ARCEV GEDIQKWLV SGWAL+Y Sbjct: 60 TERWTCGIAARDELAKYTEGKNWVCHARAIDRRGRTVARCEVGGEDIQKWLVRSGWALSY 119 Query: 121 TRASHDYEADEKAAREAKAGMWQGAFIAPWDWRVRNKKTTVLGAVKPPDGANAILLASAS 180 TR SHDY+ADE AAREAKAGMWQGAFIAPWDWRVRNKKTT+LGA KPP+GA+A+LLASAS Sbjct: 120 TRVSHDYDADEAAAREAKAGMWQGAFIAPWDWRVRNKKTTILGATKPPEGAHAVLLASAS 179 Query: 181 GPVAPSPDCTIKGNVNRSGECIFHQRTSRWYAKIEMKISKGTRWFCSVEEAEAAGCRETR 240 GPVAPSPDCTIKGNVN +GECI+HQ TSRWY +I+MKISKGTRWFCSVEEAEAAGCRET+ Sbjct: 180 GPVAPSPDCTIKGNVNTAGECIYHQPTSRWYTQIKMKISKGTRWFCSVEEAEAAGCRETK 239 Query: 241 R 241 R Sbjct: 240 R 240 >ref|YP_001236732.1| putative nuclease-like protein [Bradyrhizobium sp. BTAi1] gb|ABQ32826.1| putative nuclease-like protein [Bradyrhizobium sp. BTAi1] Length = 241 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/220 (77%), Positives = 190/220 (86%) Query: 22 DITGVPKIRDGDQLMIGSVRIRLAGVDAPSTDQLCLNTKGERWTCGVAARDELIKHAGSK 81 +ITG+PKIR+ D + IG+ RIRL G+DAPS DQLCLN GERWTCGVAARDELIKHA K Sbjct: 22 EITGIPKIREADGITIGTTRIRLGGIDAPSVDQLCLNKDGERWTCGVAARDELIKHADGK 81 Query: 82 SWTCHARSVDRRGRTIARCEVDGEDIQKWLVASGWALAYTRASHDYEADEKAAREAKAGM 141 SW CH R++DRRGR +ARC+VDGEDIQKWLV +GWALAY SHDYE +E AR AKAGM Sbjct: 82 SWVCHPRAIDRRGRQVARCDVDGEDIQKWLVRNGWALAYRTVSHDYEPEEAEARTAKAGM 141 Query: 142 WQGAFIAPWDWRVRNKKTTVLGAVKPPDGANAILLASASGPVAPSPDCTIKGNVNRSGEC 201 WQGAFIAPWDWRVRNKKTT+LGA KPP+ A ILLASASGPVAPSPDCTIKGNVN +GEC Sbjct: 142 WQGAFIAPWDWRVRNKKTTILGATKPPESARNILLASASGPVAPSPDCTIKGNVNSAGEC 201 Query: 202 IFHQRTSRWYAKIEMKISKGTRWFCSVEEAEAAGCRETRR 241 I+H SRWYA+I+M +SKGTRWFCSVEEAEAAGCRETRR Sbjct: 202 IYHTPQSRWYAQIKMHVSKGTRWFCSVEEAEAAGCRETRR 241 >ref|YP_567921.1| nuclease [Rhodopseudomonas palustris BisB5] gb|ABE38020.1| nuclease (SNase-like) [Rhodopseudomonas palustris BisB5] Length = 242 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 170/224 (75%), Positives = 191/224 (85%) Query: 18 AVAADITGVPKIRDGDQLMIGSVRIRLAGVDAPSTDQLCLNTKGERWTCGVAARDELIKH 77 A A +ITGVPKIRDGD L IGS RIRLAG+DAPS DQLCLN KGERWTCG+AARD L+ H Sbjct: 19 AQATEITGVPKIRDGDHLTIGSARIRLAGIDAPSIDQLCLNPKGERWTCGIAARDALVAH 78 Query: 78 AGSKSWTCHARSVDRRGRTIARCEVDGEDIQKWLVASGWALAYTRASHDYEADEKAAREA 137 KSWTC ++ ++A+CEVDGEDIQ+W+V SGWAL+Y R +H Y+ADEKAAR A Sbjct: 79 VAGKSWTCRVMRTEKNALSVAKCEVDGEDIQQWMVKSGWALSYVRFAHTYDADEKAARTA 138 Query: 138 KAGMWQGAFIAPWDWRVRNKKTTVLGAVKPPDGANAILLASASGPVAPSPDCTIKGNVNR 197 +AG+WQGAFIAPWDWRVRN KTTVLGA +PP A ILLASASGPVAPSPDCTIKGNVN Sbjct: 139 RAGLWQGAFIAPWDWRVRNNKTTVLGATRPPKNARNILLASASGPVAPSPDCTIKGNVNT 198 Query: 198 SGECIFHQRTSRWYAKIEMKISKGTRWFCSVEEAEAAGCRETRR 241 SGECI+H+ TSRWYAKI+MKISKGTRWFCSVE+AEAAGCRETRR Sbjct: 199 SGECIYHKPTSRWYAKIQMKISKGTRWFCSVEDAEAAGCRETRR 242