BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0214.0005.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772997.1| transcriptional regulator [Bradyrhizobium japon... 654 0.0 ref|YP_995603.1| periplasmic-binding protein/LacI transcriptiona... 442 e-122 ref|ZP_08872673.1| periplasmic-binding protein/LacI transcriptio... 441 e-122 ref|YP_995562.1| periplasmic-binding protein/LacI transcriptiona... 310 2e-82 ref|ZP_06053011.1| transcriptional regulator LacI family [Grimon... 306 4e-81 >ref|NP_772997.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51622.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/348 (95%), Positives = 337/348 (96%), Gaps = 4/348 (1%) Query: 2 MRLTNA----KSVKQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIP 57 MRLT+A KS KQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIP Sbjct: 33 MRLTSANSANKSAKQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIP 92 Query: 58 HAPARILSSRRSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDVELQQ 117 HAPARILSSRRSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLD+ELQQ Sbjct: 93 HAPARILSSRRSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDIELQQ 152 Query: 118 ARNLISRGVDGLVLRGDCHHDGLRKLLADNAVPFINVGIYQPDRPHPCVGTNNEAAAHRA 177 ARNLISRGVDGLVLRGDCHHD LRKLLADN VPFINVGIYQPDRP+PCVGT+NEAAAHRA Sbjct: 153 ARNLISRGVDGLVLRGDCHHDALRKLLADNEVPFINVGIYQPDRPYPCVGTDNEAAAHRA 212 Query: 178 AAHVIELGHRRIGIVSALQRNNDRASARVAGFRRALTENGLELPPQWHVEVPYTLDDARE 237 AAHVIELGHRRIGIVSALQRNNDRASARVAGFRRAL ENGLELP QWHVEVPYTLDDARE Sbjct: 213 AAHVIELGHRRIGIVSALQRNNDRASARVAGFRRALAENGLELPSQWHVEVPYTLDDARE 272 Query: 238 AARYLLNLKDRPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLT 297 AARYLLNLKDRPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLT Sbjct: 273 AARYLLNLKDRPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLT 332 Query: 298 TIHVPTGETWQRAGEYLVRSLAGEQTIMHREIDFSLVVRESTAPPLKS 345 TIHVPTGETWQRAGEYLVRSLAGEQTIMHREIDFSLVVRESTA P KS Sbjct: 333 TIHVPTGETWQRAGEYLVRSLAGEQTIMHREIDFSLVVRESTAAPPKS 380 >ref|YP_995603.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM56585.1| transcriptional regulator, LacI family [Verminephrobacter eiseniae EF01-2] Length = 364 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/340 (67%), Positives = 270/340 (79%), Gaps = 4/340 (1%) Query: 8 KSVKQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIPHAPARILSSR 67 KSV GIR VA GVSTAS+SR LN+P++VS LR RI+ AI LGYIP A AR LSSR Sbjct: 4 KSV--GIRDVAKHVGVSTASISRTLNSPESVSSELRMRIDAAIAELGYIPDAAARALSSR 61 Query: 68 RSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDVELQQARNLISRGVD 127 R+RT+GAI+PT+DN MFARGI +LQ YLS GY+L L TSGYD + E +QA+N+ SRGVD Sbjct: 62 RTRTIGAIIPTVDNAMFARGIEALQSYLSLQGYLLLLATSGYDPETEARQAQNMASRGVD 121 Query: 128 GLVLRGDCHHDGLRKLLADNAVPFINVGIYQPDRPHPCVGTNNEAAAHRAAAHVIELGHR 187 GL+LRGD H D LR+LLA +PFINVG+Y PD+P+ VG +N AAA RA ++IELGHR Sbjct: 122 GLILRGDTHTDALRRLLAAQQIPFINVGVYHPDKPYASVGGDNGAAAWRACRYLIELGHR 181 Query: 188 RIGIVSALQRNNDRASARVAGFRRALTENGLELPPQWHVEVPYTLDDAREAARYLLNL-- 245 RIG+V+AL RNNDRA+ARVAG RRAL E+GL L W++EVPY LDDAR+ AR+LL+ Sbjct: 182 RIGMVAALTRNNDRAAARVAGVRRALAESGLALRASWYIEVPYHLDDARQGARWLLSSPR 241 Query: 246 KDRPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLTTIHVPTGE 305 +D PTAVVCGNDVIAYGVLLEAER G VP +LSV+GFDDL+WSRHLRPSLTT+HVPT E Sbjct: 242 EDWPTAVVCGNDVIAYGVLLEAERRGLKVPDELSVMGFDDLEWSRHLRPSLTTMHVPTDE 301 Query: 306 TWQRAGEYLVRSLAGEQTIMHREIDFSLVVRESTAPPLKS 345 W RAGEYLV +L+G QT +H E+D LVVRESTA P S Sbjct: 302 VWSRAGEYLVNALSGRQTTLHHEVDVHLVVRESTARPWTS 341 >ref|ZP_08872673.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter sp. At4] Length = 351 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/338 (66%), Positives = 271/338 (80%), Gaps = 2/338 (0%) Query: 8 KSVKQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIPHAPARILSSR 67 KSV GIR VA GVSTAS+SR LNNP++V P LR RI+ AI LGYIP A AR LSSR Sbjct: 4 KSV--GIRDVAKHVGVSTASISRTLNNPESVRPELRVRIDAAIAELGYIPDAAARALSSR 61 Query: 68 RSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDVELQQARNLISRGVD 127 R+RT+GAI+PT+DN MFARGI +LQ YLS GY+L L+TS YD + E +QA+N++SRG+D Sbjct: 62 RTRTIGAIIPTVDNAMFARGIEALQTYLSLQGYLLLLSTSDYDPETEARQAQNMVSRGID 121 Query: 128 GLVLRGDCHHDGLRKLLADNAVPFINVGIYQPDRPHPCVGTNNEAAAHRAAAHVIELGHR 187 GL+LRGD H D LR+LLA +PFINVG+Y P++P+ VG NNEAAA RA ++IELGHR Sbjct: 122 GLILRGDTHTDALRRLLASQRIPFINVGVYHPEKPYASVGGNNEAAAWRACRYLIELGHR 181 Query: 188 RIGIVSALQRNNDRASARVAGFRRALTENGLELPPQWHVEVPYTLDDAREAARYLLNLKD 247 +IG+V+AL NNDRA+ARVAG RRAL + GL L P+W++EVPY LDDAR+ AR LL+ D Sbjct: 182 KIGMVAALSANNDRATARVAGVRRALAQGGLSLRPEWYIEVPYHLDDARQGARALLSASD 241 Query: 248 RPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLTTIHVPTGETW 307 PTAVVCGNDVIAYGV+LE ER G +VP DLSV+GFDDL+WSRHLRPSL+TIHVPT E W Sbjct: 242 WPTAVVCGNDVIAYGVVLEVERRGLNVPGDLSVMGFDDLEWSRHLRPSLSTIHVPTDEVW 301 Query: 308 QRAGEYLVRSLAGEQTIMHREIDFSLVVRESTAPPLKS 345 RAGEYLV+SLAG +H E+D SLVVRESTA P ++ Sbjct: 302 TRAGEYLVKSLAGRPVALHHEVDVSLVVRESTARPRRA 339 >ref|YP_995562.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM56544.1| transcriptional regulator, LacI family [Verminephrobacter eiseniae EF01-2] Length = 348 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/340 (47%), Positives = 223/340 (65%) Query: 2 MRLTNAKSVKQGIRAVAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIPHAPA 61 M +T+ + I VA +A VSTA+VSR LN P AVS SLR+++ A+ LGY+PHA A Sbjct: 1 MPMTSPGNKHPTIDDVARKAAVSTATVSRVLNRPQAVSASLRSKVAAAVTRLGYVPHAGA 60 Query: 62 RILSSRRSRTLGAIVPTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDVELQQARNL 121 R L RRS T+GA+ PT+DN +FA I +L + L+ L + TSGYD+ E++QA NL Sbjct: 61 RALMLRRSGTVGAVFPTVDNAIFATAIDALGRRLAQSDIQLLIATSGYDVLGEMRQAINL 120 Query: 122 ISRGVDGLVLRGDCHHDGLRKLLADNAVPFINVGIYQPDRPHPCVGTNNEAAAHRAAAHV 181 ++RG D LVL G C H L +A ++P ++V +++P H VG +N AA +A ++ Sbjct: 121 VTRGADALVLCGLCQHPDLLHFIARRSLPCVHVMVHEPSGKHVNVGFDNAAAMAQATRYL 180 Query: 182 IELGHRRIGIVSALQRNNDRASARVAGFRRALTENGLELPPQWHVEVPYTLDDAREAARY 241 I+LGHRRI +++ + ++NDRA RV G RRAL GL+ P Q V+ PY L DAR R Sbjct: 181 IDLGHRRIAMLAGITQHNDRAMQRVEGVRRALQAAGLDFPEQRLVQRPYALADARAGLRQ 240 Query: 242 LLNLKDRPTAVVCGNDVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLTTIHV 301 L+ PTAVVCGNDV+A+G LLEA G VP +LS+VGFDDL+ +RHL+P+LTT+ + Sbjct: 241 LMAQDPAPTAVVCGNDVLAFGALLEANSLGLKVPAELSIVGFDDLEMARHLQPALTTVRI 300 Query: 302 PTGETWQRAGEYLVRSLAGEQTIMHREIDFSLVVRESTAP 341 PT W A + +V ++ G+ EID +LVVR+STAP Sbjct: 301 PTQTMWSSAADRIVAAMGGQAFPRSTEIDVALVVRQSTAP 340 >ref|ZP_06053011.1| transcriptional regulator LacI family [Grimontia hollisae CIP 101886] gb|EEY71761.1| transcriptional regulator LacI family [Grimontia hollisae CIP 101886] Length = 354 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 155/324 (47%), Positives = 213/324 (65%) Query: 17 VAARAGVSTASVSRALNNPDAVSPSLRARIEQAIDALGYIPHAPARILSSRRSRTLGAIV 76 VA AGVSTA+VSR L NP AVS I AI++LGYIPH A+ L+S+RSRT+G IV Sbjct: 25 VAMAAGVSTATVSRYLANPSAVSEKRGKLIRCAIESLGYIPHGAAQALASQRSRTIGVIV 84 Query: 77 PTIDNTMFARGIASLQQYLSSVGYMLFLTTSGYDLDVELQQARNLISRGVDGLVLRGDCH 136 PTIDN +FA GI + Q+ L GY LF+ +S Y + EL QA LISRGV+GL+L G H Sbjct: 85 PTIDNDIFAEGIQAFQRRLQEKGYTLFIASSDYSTEEELAQAERLISRGVEGLMLVGAEH 144 Query: 137 HDGLRKLLADNAVPFINVGIYQPDRPHPCVGTNNEAAAHRAAAHVIELGHRRIGIVSALQ 196 L +L + +P++ ++PD PHPC+G +N AA R +++LGH + +S + Sbjct: 145 QPQLFDILHNKQLPYLYTWSFKPDLPHPCIGFDNYRAATRLTQFLLDLGHTQFAAISGIT 204 Query: 197 RNNDRASARVAGFRRALTENGLELPPQWHVEVPYTLDDAREAARYLLNLKDRPTAVVCGN 256 R NDRA R+AG LT +G+EL P+ +E Y L ++R+A R L+ RPTA+VCGN Sbjct: 205 RLNDRAKDRLAGCIDTLTAHGIELAPEHIIECRYDLAESRQALRKLMTFTPRPTAIVCGN 264 Query: 257 DVIAYGVLLEAERDGFSVPRDLSVVGFDDLDWSRHLRPSLTTIHVPTGETWQRAGEYLVR 316 D+IA G L EA+ G VP +LS+VGFDD+ + H+ P+LTT+ VP+ E ++A +YL+ Sbjct: 265 DIIAMGALFEAQSLGIRVPEELSIVGFDDVAMASHIHPALTTMQVPSKEMGEKAADYLLA 324 Query: 317 SLAGEQTIMHREIDFSLVVRESTA 340 LAGE+ E++ LVVRE+TA Sbjct: 325 RLAGERVSDTLELEAKLVVRETTA 348