BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0214.0002.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_487667.1| GntR family transcriptional regulator [Rhodopse... 416 e-114 ref|YP_001631514.1| GntR family transcriptional regulator [Borde... 306 1e-81 ref|NP_883689.1| GntR family transcriptional regulator [Bordetel... 304 8e-81 ref|YP_002947378.1| transcriptional regulator, GntR family [Vari... 294 7e-78 ref|ZP_02191361.1| putative GntR-family transcriptional regulato... 260 1e-67 >ref|YP_487667.1| GntR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08756.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris HaA2] Length = 256 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/240 (83%), Positives = 221/240 (92%) Query: 1 MELSSDSHVPKYAQIADIFRQRIARGVWSQGFRLPANEELAAEFGVSRVTIRQAVELLAR 60 M+LS DSHVPKYAQIADIFRQRIARG WS+G RLPANE LA EFGVSRVTIRQAVELLAR Sbjct: 17 MDLSIDSHVPKYAQIADIFRQRIARGSWSRGMRLPANEALAEEFGVSRVTIRQAVELLAR 76 Query: 61 DGVIEAQQGRGTFVTGTVRQDRWLKVETTLADLADMYRDTSPEIINISESRSDAPLLPED 120 DG++EAQQGRGTF+TG V+QDRWLKVET+L+DLA++Y+DTSPEIINI+ES S APL+ D Sbjct: 77 DGILEAQQGRGTFITGQVKQDRWLKVETSLSDLAEVYQDTSPEIINIAESISKAPLIEAD 136 Query: 121 GKPAEKYVFMRRLHSRQKQPYCVISIYLDEKIFRRSPKRFRNETVIPILNDLRDPAIASA 180 GK A +YVFMRR+HSR QPYCVISIYLDE IFRRSP +FR +TVIPIL DL++PAIASA Sbjct: 137 GKAAARYVFMRRVHSRGGQPYCVISIYLDETIFRRSPAKFRKQTVIPILKDLKNPAIASA 196 Query: 181 RQTLTIGTADIEAARLLRVPLNSPVAEVRRVFTASDRTVIYLGEVTYRGDFVRIDMDLRP 240 RQTLTIGTAD+E ARLLRVPLNSPVAEVRRVFTA+DRTVIYLGEVTYRGDFVRIDMDLRP Sbjct: 197 RQTLTIGTADLEVARLLRVPLNSPVAEVRRVFTAADRTVIYLGEVTYRGDFVRIDMDLRP 256 >ref|YP_001631514.1| GntR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43246.1| transcriptional regulator, GntR family [Bordetella petrii] Length = 266 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 184/235 (78%) Query: 6 DSHVPKYAQIADIFRQRIARGVWSQGFRLPANEELAAEFGVSRVTIRQAVELLARDGVIE 65 DS +P+Y Q+AD+ RQRIARG+W QG ++P+ EEL AEFGV+RVT+RQAV++L R+G++ Sbjct: 32 DSPIPRYLQLADLMRQRIARGIWEQGRKVPSLEELVAEFGVARVTVRQAVDVLTREGLVS 91 Query: 66 AQQGRGTFVTGTVRQDRWLKVETTLADLADMYRDTSPEIINISESRSDAPLLPEDGKPAE 125 QQGRGTFVTG DRWL+V+TTLA+LA++YRDT P+I+ I ES APL P+DG A Sbjct: 92 PQQGRGTFVTGLPPNDRWLRVQTTLAELAEVYRDTQPKIVTIDESIHSAPLTPQDGATAG 151 Query: 126 KYVFMRRLHSRQKQPYCVISIYLDEKIFRRSPKRFRNETVIPILNDLRDPAIASARQTLT 185 +YVFMRR+H R QPYCVI+IYL E+IFR+ P RFRNETVIP+L + IA ARQTLT Sbjct: 152 QYVFMRRIHERAGQPYCVINIYLAERIFRQDPVRFRNETVIPLLVSMPGLHIAQARQTLT 211 Query: 186 IGTADIEAARLLRVPLNSPVAEVRRVFTASDRTVIYLGEVTYRGDFVRIDMDLRP 240 I TAD E A+ L+V +N+P+AEVRRVF VIYL EVTYRGDF+ ++M+L P Sbjct: 212 ISTADAEVAQQLQVAVNTPIAEVRRVFVDDGGQVIYLSEVTYRGDFIHVEMNLIP 266 >ref|NP_883689.1| GntR family transcriptional regulator [Bordetella parapertussis 12822] ref|NP_888998.1| GntR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE36691.1| putative GntR-family transcriptional regulator [Bordetella parapertussis] emb|CAE32952.1| putative GntR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 241 Score = 304 bits (778), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 144/238 (60%), Positives = 189/238 (79%), Gaps = 4/238 (1%) Query: 5 SDSHVPKYAQIADIFRQRIARGVWSQGFRLPANEELAAEFGVSRVTIRQAVELLARDGVI 64 DS +P+Y Q+AD+ RQRIARG W QG RLP+ EEL AEFGV+RVT+RQA+++L R+G++ Sbjct: 6 HDSPIPRYLQLADLMRQRIARGQWGQGHRLPSLEELVAEFGVARVTVRQAIDVLTREGLV 65 Query: 65 EAQQGRGTFVTGTVRQDRWLKVETTLADLADMYRDTSPEIINISESRSDAPLLPEDGKPA 124 QQGRGTFVTG DRWL+V+TTLA+LA +YRDT P+I+NI E+ ++ PL +DG A Sbjct: 66 SPQQGRGTFVTGLPPNDRWLQVQTTLAELAKVYRDTKPKIVNIDETITNPPLTAQDGVAA 125 Query: 125 EKYVFMRRLHSRQKQPYCVISIYLDEKIFRRSPKRFRNETVIPILNDLRDPA--IASARQ 182 E+YV+MRR+H R+ +PYCVI+IYLDE+IFRR P R+RNETVIP+L + DPA IA A Q Sbjct: 126 ERYVYMRRVHEREGRPYCVINIYLDEQIFRRDPVRYRNETVIPLL--VSDPALRIARAHQ 183 Query: 183 TLTIGTADIEAARLLRVPLNSPVAEVRRVFTASDRTVIYLGEVTYRGDFVRIDMDLRP 240 LTIGTAD+E A L+VP+N+P+AEVRR+F V+YL EV+YRGDF+ ++M+L P Sbjct: 184 VLTIGTADMEVAGHLQVPVNTPIAEVRRLFLDEAGKVVYLSEVSYRGDFIHLEMNLIP 241 >ref|YP_002947378.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] gb|ACS22112.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] Length = 241 Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 134/235 (57%), Positives = 188/235 (80%) Query: 6 DSHVPKYAQIADIFRQRIARGVWSQGFRLPANEELAAEFGVSRVTIRQAVELLARDGVIE 65 DS +P+Y Q+AD+ RQRIARG+W + RLP+ +EL AEFGV+RVT+RQA++LLAR+G++ Sbjct: 7 DSPMPRYHQLADLLRQRIARGIWPREHRLPSLDELTAEFGVARVTVRQAIDLLAREGLVS 66 Query: 66 AQQGRGTFVTGTVRQDRWLKVETTLADLADMYRDTSPEIINISESRSDAPLLPEDGKPAE 125 QQGRGTFVTG +DR++ V T+L +LA +Y DT P+I+NI E+ + PL P +G+PA Sbjct: 67 PQQGRGTFVTGMPNRDRFISVVTSLDELARVYEDTQPKIMNIDEAATSPPLAPGEGQPAA 126 Query: 126 KYVFMRRLHSRQKQPYCVISIYLDEKIFRRSPKRFRNETVIPILNDLRDPAIASARQTLT 185 +Y FMRR+H R + YCVI+IYLDE+IFR++P++FR TVIP+L ++ IA+A Q LT Sbjct: 127 RYAFMRRVHFRDGRAYCVINIYLDERIFRKAPEKFRTRTVIPLLIAMKSVKIAAAHQVLT 186 Query: 186 IGTADIEAARLLRVPLNSPVAEVRRVFTASDRTVIYLGEVTYRGDFVRIDMDLRP 240 IGTAD+E A LL++P+N+PVAEVRR+F ++ TVIYL +VTYRGD +R++M+L+P Sbjct: 187 IGTADMEVAGLLKLPMNAPVAEVRRIFKDAEDTVIYLADVTYRGDAIRVEMNLKP 241 >ref|ZP_02191361.1| putative GntR-family transcriptional regulator [alpha proteobacterium BAL199] gb|EDP61885.1| putative GntR-family transcriptional regulator [alpha proteobacterium BAL199] Length = 241 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 169/232 (72%) Query: 9 VPKYAQIADIFRQRIARGVWSQGFRLPANEELAAEFGVSRVTIRQAVELLARDGVIEAQQ 68 +P+Y Q+AD+ RQRIAR + G LP+ E+L AEF VSRVT+RQA+++L+++G++ Q+ Sbjct: 10 IPRYVQLADLIRQRIARAELAPGDLLPSLEQLMAEFDVSRVTVRQAIQILSQEGLVTPQR 69 Query: 69 GRGTFVTGTVRQDRWLKVETTLADLADMYRDTSPEIINISESRSDAPLLPEDGKPAEKYV 128 GRGTFVT + R L+V TTL DL +MYR +P++ NI ES L EDG A KY Sbjct: 70 GRGTFVTAKAGRKRRLQVHTTLDDLVEMYRGDTPDLSNIVESYQPPVLTEEDGTAAPKYF 129 Query: 129 FMRRLHSRQKQPYCVISIYLDEKIFRRSPKRFRNETVIPILNDLRDPAIASARQTLTIGT 188 MRR+H+R + YCVISIY++ IFR +P RFR E ++PIL L IA ARQTL I Sbjct: 130 HMRRVHARDGERYCVISIYIENGIFRCAPGRFRREVILPILTSLPGVTIARARQTLKIAA 189 Query: 189 ADIEAARLLRVPLNSPVAEVRRVFTASDRTVIYLGEVTYRGDFVRIDMDLRP 240 AD+E +RLL +P+N+PVAEVRRV +A D TVIYLGEVTYRGD++ ++MDL+P Sbjct: 190 ADVEVSRLLDIPVNTPVAEVRRVLSAPDGTVIYLGEVTYRGDYIHLEMDLQP 241