BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0213.0002.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204126.1| putative signal peptide [Bradyrhizobium sp. ...   149   1e-34
ref|YP_001238435.1| hypothetical protein BBta_2358 [Bradyrhizobi...   144   3e-33
ref|NP_769177.1| hypothetical protein bll2537 [Bradyrhizobium ja...   141   3e-32
ref|ZP_01045224.1| hypothetical protein NB311A_14832 [Nitrobacte...   138   2e-31
ref|YP_534187.1| hypothetical protein RPC_4345 [Rhodopseudomonas...   136   1e-30

>ref|YP_001204126.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL75889.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 115

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 100/120 (83%), Gaps = 6/120 (5%)

Query: 1   MRNRILAVAAVAAAITVPAVAAQAQTVGVVRGGPPVAVDDDEG-IAVEQRPAFREYIVRE 59
           MR ++  +AA+ AA+ +PAVA QAQ+  V RG   V V++D   I VE+RP FREY+VRE
Sbjct: 1   MRTQV-TLAALVAALVIPAVA-QAQSYTVGRG---VVVEEDAPVITVERRPEFREYVVRE 55

Query: 60  RVPNYTVPDRIVVGTVLPDAGVTTYDVPQRFGATPYRYTVVNGETVLVEPRSRRIVQVVD 119
           RVPNY +PDR+VVGTVLP++GVT YDVPQRFGATPYRYTVVNGETVLVEPRSRRI+QVV+
Sbjct: 56  RVPNYVIPDRVVVGTVLPESGVTYYDVPQRFGATPYRYTVVNGETVLVEPRSRRIIQVVE 115


>ref|YP_001238435.1| hypothetical protein BBta_2358 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34529.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 115

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 6/120 (5%)

Query: 1   MRNRILAVAAVAAAITVPAVAAQAQTVGVVRGGPPVAVDDDEG-IAVEQRPAFREYIVRE 59
           MR   L +A + AA+ +P VAA AQ+  V RG   V V++D   I VE+RP FREY+VRE
Sbjct: 1   MRTH-LTLAGLVAALVIP-VAAGAQSYTVGRG---VVVEEDAPLITVERRPEFREYVVRE 55

Query: 60  RVPNYTVPDRIVVGTVLPDAGVTTYDVPQRFGATPYRYTVVNGETVLVEPRSRRIVQVVD 119
           RVPNY +PDR+VVGTVLP++GVT YDVPQRFG TPYRYTVVNGETVLVEPRSRRI+QVV+
Sbjct: 56  RVPNYVIPDRVVVGTVLPESGVTYYDVPQRFGTTPYRYTVVNGETVLVEPRSRRIIQVVE 115


>ref|NP_769177.1| hypothetical protein bll2537 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47802.1| bll2537 [Bradyrhizobium japonicum USDA 110]
          Length = 123

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/119 (68%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 1   MRNRILAVAAVAAAITVPAVAAQAQTVGVVRGGPPVAVDDDEGIAVEQRPAFREYIVRER 60
           MRNRILA+AA+  A+  P +AAQAQT G+  G  PV VD    IAVEQRPAFR+Y+V +R
Sbjct: 7   MRNRILALAALGVALGAP-IAAQAQT-GITVGRAPVVVDGGPTIAVEQRPAFRDYVVEQR 64

Query: 61  VPNYTVPDRIVVGTVLPDAGVTTYDVPQRFGATPYRYTVVNGETVLVEPRSRRIVQVVD 119
           VP + +PDR+VVG  LP++GVT YDVPQRFGAT YRYTVVNGETVLVEPRSRRIV+V+D
Sbjct: 65  VPAFRIPDRVVVGATLPESGVTYYDVPQRFGATTYRYTVVNGETVLVEPRSRRIVEVLD 123


>ref|ZP_01045224.1| hypothetical protein NB311A_14832 [Nitrobacter sp. Nb-311A]
 gb|EAQ36552.1| hypothetical protein NB311A_14832 [Nitrobacter sp. Nb-311A]
          Length = 125

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 87/125 (69%), Gaps = 6/125 (4%)

Query: 1   MRNRILAVAAVAAAITVPAVA-AQAQTVGV-----VRGGPPVAVDDDEGIAVEQRPAFRE 54
           MRN  LA A +  A+    +A AQ  T+G      V    PV V  D GI  EQRPAFRE
Sbjct: 1   MRNAALAFATLIIALGAGVIAHAQGNTIGAAPSTDVVVTQPVEVSADGGITSEQRPAFRE 60

Query: 55  YIVRERVPNYTVPDRIVVGTVLPDAGVTTYDVPQRFGATPYRYTVVNGETVLVEPRSRRI 114
           Y+V ERVP++TV   IVVG VL D  VT YDVPQRFGATPYRYTVVNGETVL+EPRSRRI
Sbjct: 61  YVVSERVPSFTVSQNIVVGAVLADESVTLYDVPQRFGATPYRYTVVNGETVLIEPRSRRI 120

Query: 115 VQVVD 119
           +QV+D
Sbjct: 121 MQVID 125


>ref|YP_534187.1| hypothetical protein RPC_4345 [Rhodopseudomonas palustris BisB18]
 gb|ABD89868.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 118

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 86/119 (72%), Gaps = 1/119 (0%)

Query: 1   MRNRILAVAAVAAAITVPAVAAQAQTVGVVRGGPPVAVDDDEGIAVEQRPAFREYIVRER 60
           MRN I+ +AA+A      A  AQ+ T G    G  VA D   GIA EQR AFR YIVRER
Sbjct: 1   MRNSIVGLAALAGVCAPLAAQAQSLTTGSASDGV-VAADAGGGIAREQRSAFRAYIVRER 59

Query: 61  VPNYTVPDRIVVGTVLPDAGVTTYDVPQRFGATPYRYTVVNGETVLVEPRSRRIVQVVD 119
           VP+Y++  R+ VG+VLP+ GV  YDVPQ FGAT +RYTVVNGETVLVEPR+RR+VQV+D
Sbjct: 60  VPDYSIQQRVTVGSVLPETGVIMYDVPQSFGATTHRYTVVNGETVLVEPRTRRVVQVID 118