BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0017.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767417.1| transcriptional regulator [Bradyrhizobium japon... 422 e-116 ref|YP_001203782.1| oxidative stress transcriptional regulator [... 408 e-112 ref|YP_002542023.1| hydrogen peroxide sensing transcriptional re... 388 e-106 ref|YP_001242204.1| LysR family transcriptional regulator [Brady... 386 e-105 ref|YP_004141505.1| LysR family transcriptional regulator [Mesor... 382 e-104 >ref|NP_767417.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46042.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/270 (80%), Positives = 244/270 (90%) Query: 1 VSQPALSMQIREMEQAVGGVLIERNARQVTLTTFGEDLLRRVRDILRSVDELGDFARASR 60 +SQPALSMQI+E+E+A+GG+L+ER ARQV LT FGE+L RVRDILRSVDELGDFARAS+ Sbjct: 30 ISQPALSMQIKELEEALGGLLLERTARQVALTRFGEELAPRVRDILRSVDELGDFARASQ 89 Query: 61 DKLAGRLRVGMIPTIAPYLLPKVIENLARLHPELDIHVRETLTPKLIKEVAEGRLDTAIV 120 D+ AGRLR+GMIPTIAPYLLPK+ +NL R+HPELDI VRET+TP+LI+E+ EGRLDTAIV Sbjct: 90 DRFAGRLRIGMIPTIAPYLLPKITKNLTRMHPELDIRVRETMTPRLIQELVEGRLDTAIV 149 Query: 121 ALPVSEPSLTEVALFSENFLLVRPGEDAKTPVPSAEMLREMRLLLLEEGHCFRDQALSFC 180 ALPVSEPSLTEVALF E FLLVRPG D TP PS EM+REMRLLLLEEGHCFRDQALSFC Sbjct: 150 ALPVSEPSLTEVALFEEKFLLVRPGADEGTPAPSREMMREMRLLLLEEGHCFRDQALSFC 209 Query: 181 NMQSSPPREVLDASSLSTLVQMVGAGIGVTLIPEMAVTVETRSARVTVSRFKHPQPSRTI 240 NMQS+PPRE+LDA+SLSTLVQMV AGIGVTLIPEMAV VETRSA V+++RF+ PQPSRTI Sbjct: 210 NMQSAPPREMLDANSLSTLVQMVSAGIGVTLIPEMAVPVETRSASVSLTRFRDPQPSRTI 269 Query: 241 GMVWRKTSPLAAQLQQISEVVSLAARALRA 270 GMVWRKTSPLA QL QISEVV L+A +RA Sbjct: 270 GMVWRKTSPLARQLLQISEVVCLSAGKVRA 299 >ref|YP_001203782.1| oxidative stress transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL75545.1| transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) [Bradyrhizobium sp. ORS 278] Length = 309 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 221/284 (77%), Positives = 243/284 (85%), Gaps = 4/284 (1%) Query: 1 VSQPALSMQIREMEQAVGGVLIERNARQVTLTTFGEDLLRRVRDILRSVDELGDFARASR 60 +SQPALSMQI+EME A+GGVL+ERNARQV LT FGE L RVR+ILRSVDELGDFARASR Sbjct: 30 ISQPALSMQIKEMEDALGGVLLERNARQVVLTRFGEQLAARVREILRSVDELGDFARASR 89 Query: 61 DKLAGRLRVGMIPTIAPYLLPKVIENLARLHPELDIHVRETLTPKLIKEVAEGRLDTAIV 120 D L GRLR+GMIPT+APYLLPKVI +L R HPE+DIHVRE+ TPKLI+E+ EGRLD AIV Sbjct: 90 DTLTGRLRLGMIPTVAPYLLPKVIGDLTRKHPEIDIHVRESKTPKLIEELVEGRLDAAIV 149 Query: 121 ALPVSEPSLTEVALFSENFLLVRPGEDAKTPVPSAEMLREMRLLLLEEGHCFRDQALSFC 180 ALPVSEPSLTEVALFSENFLLVRP E VPS+E LREMRLLLLEEGHCFRDQALSFC Sbjct: 150 ALPVSEPSLTEVALFSENFLLVRPPEYEGAAVPSSESLREMRLLLLEEGHCFRDQALSFC 209 Query: 181 NMQSSPPREVLDASSLSTLVQMVGAGIGVTLIPEMAVTVETRSARVTVSRFKHPQPSRTI 240 NMQ+ PRE+LDASSLSTLVQMVGAG+GVTLIPEMAV VETRSA V+++RF PQP RTI Sbjct: 210 NMQA--PREMLDASSLSTLVQMVGAGMGVTLIPEMAVAVETRSASVSLARFAEPQPQRTI 267 Query: 241 GMVWRKTSPLAAQLQQISEVVSLAARALRAPKQDGAKEPAKRTG 284 GMVWRKTSPLA QL QISE+V AA +LR KQ A + KR G Sbjct: 268 GMVWRKTSPLAKQLMQISEIVGGAAESLR--KQAAAGQGRKRRG 309 >ref|YP_002542023.1| hydrogen peroxide sensing transcriptional regulator protein [Agrobacterium radiobacter K84] gb|ACM30426.1| hydrogen peroxide sensing transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 325 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/270 (74%), Positives = 235/270 (87%) Query: 1 VSQPALSMQIREMEQAVGGVLIERNARQVTLTTFGEDLLRRVRDILRSVDELGDFARASR 60 +SQPALSMQI+E+E+ +G L ER ARQV LT+FGE RVR+ILRSVDELGD ARAS+ Sbjct: 30 ISQPALSMQIKELEETLGTELFERGARQVRLTSFGEAFALRVREILRSVDELGDLARASQ 89 Query: 61 DKLAGRLRVGMIPTIAPYLLPKVIENLARLHPELDIHVRETLTPKLIKEVAEGRLDTAIV 120 D+L GRLR+G+IPT+APYLLP +I NL R+H L+IHVRETLT KL++E+AEGRLDTAIV Sbjct: 90 DRLVGRLRIGIIPTVAPYLLPAIIGNLTRMHDGLEIHVRETLTSKLVQELAEGRLDTAIV 149 Query: 121 ALPVSEPSLTEVALFSENFLLVRPGEDAKTPVPSAEMLREMRLLLLEEGHCFRDQALSFC 180 ALPVSEPSLTEV+LFSENF+LVRPGED PVP+ E LREMRLLLLEEGHCFRDQALSFC Sbjct: 150 ALPVSEPSLTEVSLFSENFVLVRPGEDEGKPVPNREALREMRLLLLEEGHCFRDQALSFC 209 Query: 181 NMQSSPPREVLDASSLSTLVQMVGAGIGVTLIPEMAVTVETRSARVTVSRFKHPQPSRTI 240 N+QS+ PRE++D SSLSTLVQMV AGIGVTLIPEMAV VETRSA V+V+RF++ QPSRTI Sbjct: 210 NIQSALPRELMDGSSLSTLVQMVSAGIGVTLIPEMAVGVETRSASVSVARFQNVQPSRTI 269 Query: 241 GMVWRKTSPLAAQLQQISEVVSLAARALRA 270 GM+WRKT+PLA Q QISEVV +A A+RA Sbjct: 270 GMIWRKTNPLAKQFLQISEVVRQSADAMRA 299 >ref|YP_001242204.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38298.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 304 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 214/282 (75%), Positives = 240/282 (85%), Gaps = 4/282 (1%) Query: 1 VSQPALSMQIREMEQAVGGVLIERNARQVTLTTFGEDLLRRVRDILRSVDELGDFARASR 60 +SQPALSMQI+EME A+GGVL+ERNARQV LT FGE L RVR+ILRSVDELGDFARASR Sbjct: 25 ISQPALSMQIKEMEDALGGVLLERNARQVVLTRFGEQLAERVREILRSVDELGDFARASR 84 Query: 61 DKLAGRLRVGMIPTIAPYLLPKVIENLARLHPELDIHVRETLTPKLIKEVAEGRLDTAIV 120 DKL GRLR+G+IPT+APYLLP+VI +L R PE+DIHVRE+ TP L++E+ EGRLD AI+ Sbjct: 85 DKLIGRLRLGIIPTVAPYLLPRVIGSLMRKQPEIDIHVRESKTPTLLEELLEGRLDAAIL 144 Query: 121 ALPVSEPSLTEVALFSENFLLVRPGEDAKTPVPSAEMLREMRLLLLEEGHCFRDQALSFC 180 ALPVSEPSLTEVALF+ENFLLVRP E PVPS+E LREMRLLLLEEGHCFRDQALSFC Sbjct: 145 ALPVSEPSLTEVALFAENFLLVRPPEFEGAPVPSSESLREMRLLLLEEGHCFRDQALSFC 204 Query: 181 NMQSSPPREVLDASSLSTLVQMVGAGIGVTLIPEMAVTVETRSARVTVSRFKHPQPSRTI 240 NMQ+ PRE+LDASSLSTLVQMVGAG+GVTLIPEMAV VETRSA V+++RF PQPSRTI Sbjct: 205 NMQA--PREMLDASSLSTLVQMVGAGMGVTLIPEMAVGVETRSAAVSLARFAEPQPSRTI 262 Query: 241 GMVWRKTSPLAAQLQQISEVVSLAARALRAPKQDGAKEPAKR 282 GMVWRKTSPLA QL ISE+V AA LR KQ + KR Sbjct: 263 GMVWRKTSPLAKQLLHISEIVGSAAEGLR--KQANVGQGRKR 302 >ref|YP_004141505.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV11455.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/278 (73%), Positives = 232/278 (83%) Query: 1 VSQPALSMQIREMEQAVGGVLIERNARQVTLTTFGEDLLRRVRDILRSVDELGDFARASR 60 +SQPA+S+QIRE+E+ +G L +R RQV LT FGE+ RVRDILRSVDEL D ARASR Sbjct: 30 ISQPAISVQIRELEETLGTELFQRGPRQVRLTNFGEEFALRVRDILRSVDELTDLARASR 89 Query: 61 DKLAGRLRVGMIPTIAPYLLPKVIENLARLHPELDIHVRETLTPKLIKEVAEGRLDTAIV 120 D+L GRLR+G+IPTIAPYLLP +I NLAR+H LDIHVRET T KLI+E+A+GRLD AIV Sbjct: 90 DRLVGRLRIGVIPTIAPYLLPAIIGNLARMHDGLDIHVRETQTQKLIQELADGRLDAAIV 149 Query: 121 ALPVSEPSLTEVALFSENFLLVRPGEDAKTPVPSAEMLREMRLLLLEEGHCFRDQALSFC 180 ALPVSEPSLTE+ LF+ENF+LVRPGED PVP+ EMLREMRLLLLEEGHCFRDQALSFC Sbjct: 150 ALPVSEPSLTEIVLFAENFVLVRPGEDEGKPVPNREMLREMRLLLLEEGHCFRDQALSFC 209 Query: 181 NMQSSPPREVLDASSLSTLVQMVGAGIGVTLIPEMAVTVETRSARVTVSRFKHPQPSRTI 240 NM S+ PRE+LD SSLSTLVQMVGAG+GVTLIPEMAV VETRSA V+V+ F +PQPSRTI Sbjct: 210 NMHSARPRELLDGSSLSTLVQMVGAGVGVTLIPEMAVPVETRSAAVSVAHFANPQPSRTI 269 Query: 241 GMVWRKTSPLAAQLQQISEVVSLAARALRAPKQDGAKE 278 GM+WRKTSP+A QL ISEVV AA LRA + E Sbjct: 270 GMIWRKTSPIAKQLMLISEVVRQAAETLRAQHNPASVE 307