BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0001.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768284.1| hypothetical protein blr1644 [Bradyrhizobium ja... 503 e-140 ref|YP_534244.1| response regulator receiver/diguanylate phospho... 390 e-106 ref|YP_487933.1| response regulator receiver modulated diguanyla... 378 e-103 ref|YP_571348.1| putative cylclic diguanylate phosphodiesterase ... 374 e-102 ref|ZP_08628200.1| two-component response regulator [Bradyrhizob... 372 e-101 >ref|NP_768284.1| hypothetical protein blr1644 [Bradyrhizobium japonicum USDA 110] dbj|BAC46909.1| blr1644 [Bradyrhizobium japonicum USDA 110] Length = 268 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/261 (92%), Positives = 251/261 (96%) Query: 22 MPLEPAPSPAVDVPEALKAGWLELWYQQKIHLRTLVPSGAEALIRMRHPAWGVVPPAYFI 81 MPLEPAPSPAVDVPEALKA LELWYQQK+HLRTLVPSGAEALIRMRHPAWGVVPPAYFI Sbjct: 1 MPLEPAPSPAVDVPEALKASSLELWYQQKLHLRTLVPSGAEALIRMRHPAWGVVPPAYFI 60 Query: 82 PDESDPHFHALSEFVIERAIDDWRYLVEQIGPVNLSINLPISFLADDRAVRELCYRMPDH 141 PDESDPHFHALSEFVI RAI+DWRYL+ QIGPV+LSINLPISFLADD AVRELCYR+PDH Sbjct: 61 PDESDPHFHALSEFVIARAIEDWRYLLGQIGPVDLSINLPISFLADDAAVRELCYRIPDH 120 Query: 142 AAFAGLLIEIDSTEVVDNLDLAIDVARRVRLHNIGISIDNVGANWPSLLGLPNFPFVQLK 201 AAFAGLLIEIDS EV+DNLDLAIDVARRVRLHNIGISIDNVGA WPSLLGLPNFPFVQLK Sbjct: 121 AAFAGLLIEIDSAEVIDNLDLAIDVARRVRLHNIGISIDNVGAKWPSLLGLPNFPFVQLK 180 Query: 202 VDHQFVTGCADQRLKQTVCRRVVELAHDNSAQVVAQGVETRADFLAAHEMDFDQVQGYLF 261 VDHQ+VTGCADQRLKQTVCRR+VELAHD+ AQV+AQG ETRADFLAAHEMDFDQVQGYLF Sbjct: 181 VDHQYVTGCADQRLKQTVCRRIVELAHDSGAQVIAQGGETRADFLAAHEMDFDQVQGYLF 240 Query: 262 GKPMGVKKFARSRMHFSEKEP 282 GKPMGVKKFARSR HFSEKEP Sbjct: 241 GKPMGVKKFARSRTHFSEKEP 261 >ref|YP_534244.1| response regulator receiver/diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD89925.1| response regulator receiver modulated diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 403 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/273 (67%), Positives = 218/273 (79%) Query: 1 MLPALSTPFSAGTLRDSLASLMPLEPAPSPAVDVPEALKAGWLELWYQQKIHLRTLVPSG 60 MLP L TPFSAGTL LA L+P EP PSPAVDV EALKAGWLELWYQ+KI R+L+P G Sbjct: 121 MLPPLPTPFSAGTLHQGLAMLLPAEPVPSPAVDVAEALKAGWLELWYQRKIDTRSLMPCG 180 Query: 61 AEALIRMRHPAWGVVPPAYFIPDESDPHFHALSEFVIERAIDDWRYLVEQIGPVNLSINL 120 AEAL+RMRHP WGVVPPA+FIP E D HF LSEFVI R I DW YL+E+ G +LSINL Sbjct: 181 AEALVRMRHPTWGVVPPAHFIPAEDDQHFRTLSEFVINRTIADWHYLLERHGATDLSINL 240 Query: 121 PISFLADDRAVRELCYRMPDHAAFAGLLIEIDSTEVVDNLDLAIDVARRVRLHNIGISID 180 PISFLA+ AV +LC MP H AF GL++E+D+ EV+ N+DL +D A+R+RL NI I+ID Sbjct: 241 PISFLANRDAVHDLCSWMPTHPAFRGLIVEVDAAEVIANVDLLVDTAKRLRLRNIAIAID 300 Query: 181 NVGANWPSLLGLPNFPFVQLKVDHQFVTGCADQRLKQTVCRRVVELAHDNSAQVVAQGVE 240 +G +WP+L+ L +FPFV+LKVD +F+ GCAD RLKQTVCRR+VELA+ A+ VA G+E Sbjct: 301 RLGVDWPALMDLDSFPFVELKVDREFIAGCADDRLKQTVCRRIVELANGYGARTVATGIE 360 Query: 241 TRADFLAAHEMDFDQVQGYLFGKPMGVKKFARS 273 RADFL AHE+ FD VQGYLFGKPMG+KKFARS Sbjct: 361 NRADFLTAHEIGFDAVQGYLFGKPMGLKKFARS 393 >ref|YP_487933.1| response regulator receiver modulated diguanylate phosphodiesterase [Rhodopseudomonas palustris HaA2] gb|ABD09022.1| response regulator receiver modulated diguanylate phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 405 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/273 (63%), Positives = 218/273 (79%) Query: 1 MLPALSTPFSAGTLRDSLASLMPLEPAPSPAVDVPEALKAGWLELWYQQKIHLRTLVPSG 60 MLP L+TPFSA LR+SLA L+P EP P P VDV EALK GWLELWYQ+K+ R+L+P G Sbjct: 123 MLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEALKTGWLELWYQRKLDARSLIPCG 182 Query: 61 AEALIRMRHPAWGVVPPAYFIPDESDPHFHALSEFVIERAIDDWRYLVEQIGPVNLSINL 120 AEAL+RMRHP WGVV P+ F+PD +DPHF ALSEFV+ RAI DWRYL++ GPV+LSINL Sbjct: 183 AEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSINL 242 Query: 121 PISFLADDRAVRELCYRMPDHAAFAGLLIEIDSTEVVDNLDLAIDVARRVRLHNIGISID 180 P+ FL D +AV +LC +P H AF GL++EI++ E +++D ID ARR+RLHN+ ISID Sbjct: 243 PVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAISID 302 Query: 181 NVGANWPSLLGLPNFPFVQLKVDHQFVTGCADQRLKQTVCRRVVELAHDNSAQVVAQGVE 240 VGA+WP L+ FPFV+LKVD +VTGCAD RLK+TVCRR+V+LA D A+ A G+E Sbjct: 303 KVGADWPELMHRAAFPFVELKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATGIE 362 Query: 241 TRADFLAAHEMDFDQVQGYLFGKPMGVKKFARS 273 +R+D++AAHE+ FD VQGYLFGKPMG+KKFAR+ Sbjct: 363 SRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARA 395 >ref|YP_571348.1| putative cylclic diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB5] gb|ABE41447.1| response regulator receiver modulated diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 405 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/273 (63%), Positives = 217/273 (79%) Query: 1 MLPALSTPFSAGTLRDSLASLMPLEPAPSPAVDVPEALKAGWLELWYQQKIHLRTLVPSG 60 MLP L+TPFSA LR+S+A L+P EPAP P VDV EALK GWLELWYQ+K+ R+L P G Sbjct: 123 MLPPLATPFSAQMLRESIAPLLPQEPAPKPEVDVAEALKTGWLELWYQRKLDARSLTPCG 182 Query: 61 AEALIRMRHPAWGVVPPAYFIPDESDPHFHALSEFVIERAIDDWRYLVEQIGPVNLSINL 120 AEAL+R+RHP WGVV P+ F+PD +DPHF ALSEFV+ERA+ DWRYL+ GPV+LSINL Sbjct: 183 AEALVRLRHPNWGVVVPSAFLPDHNDPHFRALSEFVVERAVADWRYLLAHHGPVDLSINL 242 Query: 121 PISFLADDRAVRELCYRMPDHAAFAGLLIEIDSTEVVDNLDLAIDVARRVRLHNIGISID 180 P FL D +AV +LC +P H AF GL++EID+ E+ +LD +DVARR+RL NI I++D Sbjct: 243 PARFLLDAQAVDDLCAWVPAHPAFGGLIVEIDAHEIAAHLDAMVDVARRLRLRNIAIAVD 302 Query: 181 NVGANWPSLLGLPNFPFVQLKVDHQFVTGCADQRLKQTVCRRVVELAHDNSAQVVAQGVE 240 VGA+WP L+ FPFV+LKVD +VTGCAD RLK+TVCRR+V+LA D A+ A G+E Sbjct: 303 KVGADWPDLMHHDTFPFVELKVDRTYVTGCADDRLKRTVCRRIVDLAGDYGARCTATGIE 362 Query: 241 TRADFLAAHEMDFDQVQGYLFGKPMGVKKFARS 273 +RAD++AAHE+ FD VQGYLFGKPMG+KKFAR+ Sbjct: 363 SRADYIAAHELGFDLVQGYLFGKPMGLKKFARA 395 >ref|ZP_08628200.1| two-component response regulator [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09109.1| two-component response regulator [Bradyrhizobiaceae bacterium SG-6C] Length = 406 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/275 (62%), Positives = 214/275 (77%) Query: 1 MLPALSTPFSAGTLRDSLASLMPLEPAPSPAVDVPEALKAGWLELWYQQKIHLRTLVPSG 60 MLP L+TPFSA LR S+ L+P + PSP VDV EALKAGWLELWYQQKI +RTL P G Sbjct: 124 MLPPLATPFSADGLRASVVPLLPQKAPPSPPVDVTEALKAGWLELWYQQKIDVRTLAPRG 183 Query: 61 AEALIRMRHPAWGVVPPAYFIPDESDPHFHALSEFVIERAIDDWRYLVEQIGPVNLSINL 120 AEALIRMRHPAWGVVPPA FIPD DP F LS+FV+ RA++DW Y + Q GPV++SINL Sbjct: 184 AEALIRMRHPAWGVVPPASFIPDSKDPQFKGLSDFVVTRALEDWHYFIGQHGPVDISINL 243 Query: 121 PISFLADDRAVRELCYRMPDHAAFAGLLIEIDSTEVVDNLDLAIDVARRVRLHNIGISID 180 PI FL D +V LC ++PDH AF+GL++E+ E++ NLDLAI+ A+R+R HNI ISID Sbjct: 244 PIGFLEDTASVSRLCRQIPDHPAFSGLIVEVKGAEIIRNLDLAIEAAKRMRFHNIAISID 303 Query: 181 NVGANWPSLLGLPNFPFVQLKVDHQFVTGCADQRLKQTVCRRVVELAHDNSAQVVAQGVE 240 ++G +WPSL L +FPFV++KVD +FVTG AD RLKQTVCR +++LA A+ VA+GVE Sbjct: 304 DLGVDWPSLSELKSFPFVEIKVDREFVTGSADNRLKQTVCRSILDLADQVGARTVAKGVE 363 Query: 241 TRADFLAAHEMDFDQVQGYLFGKPMGVKKFARSRM 275 TR+D +AAHEM FD QG+LFGKP +KFAR+ + Sbjct: 364 TRSDLIAAHEMGFDLAQGFLFGKPANARKFARAAL 398