BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0018.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770697.1| substrate-binding protein [Bradyrhizobium japon... 748 0.0 ref|YP_001239762.1| putative ABC transporter substrate binding p... 701 0.0 ref|YP_001205297.1| putative ABC transporter substrate binding p... 699 0.0 ref|YP_486066.1| urea/short-chain binding protein of ABC transpo... 652 0.0 ref|YP_570126.1| putative urea/short-chain binding protein of AB... 645 0.0 >ref|NP_770697.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49322.1| bll4057 [Bradyrhizobium japonicum USDA 110] Length = 407 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/406 (88%), Positives = 383/406 (94%) Query: 3 TTFARRCAALLACAALGLSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVVAIKMAVEDS 62 TTFARR AALLACAA G STSAFAQDKTVKIGVLNDMSSLYADIGGPNSV A+KMAVEDS Sbjct: 2 TTFARRSAALLACAAFGFSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVAAVKMAVEDS 61 Query: 63 GLLKKGWKIDVLSGDHQNKPDVGVNIARQWVDNEKVDAIADTPNSGVALAVNNLAKEKNI 122 GL KGW IDVLSGDHQNKPD+GVNIARQW+D +KVDAIADTP+SGVALAV+NL K+KN Sbjct: 62 GLKAKGWTIDVLSGDHQNKPDIGVNIARQWIDADKVDAIADTPSSGVALAVSNLVKDKNS 121 Query: 123 VLLNSGAATADLTGKACTPNTISYTYDTYMLANGTGKALTKAGGDTWFFLTADYAFGHAL 182 VLLNSGAATADLTGKACTPNT+S+TYDTYMLANGTGKALTKAGGD+WFFLTADYAFGHAL Sbjct: 122 VLLNSGAATADLTGKACTPNTVSFTYDTYMLANGTGKALTKAGGDSWFFLTADYAFGHAL 181 Query: 183 ERDTTAVVNGNGGKVLGSVKHPINTADFSSFLLQAQSSKAKVVGLANAGGDTTNAIKQAA 242 ERDT+AVV GGKVLG VKHP+N++DFSSFLLQAQSSKAKV+GLANAGGDTTNAIKQAA Sbjct: 182 ERDTSAVVTATGGKVLGGVKHPLNSSDFSSFLLQAQSSKAKVIGLANAGGDTTNAIKQAA 241 Query: 243 EFGIVSGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDMNDQTRAWSKRFSALASKN 302 EFGIV+GGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWD+NDQTR WSKRF ++ K Sbjct: 242 EFGIVAGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDLNDQTREWSKRFQKVSPKG 301 Query: 303 AMPSMTQAGNYAMVLHYLKAMEALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGRRL 362 +MPSMT AG YA +LHYLKAM+ALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGRRL Sbjct: 302 SMPSMTVAGLYAEILHYLKAMDALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGRRL 361 Query: 363 IPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASDCPLVKK 408 IPAYLFEVKKPEESK PWDYYKL+ATIAPEDAAKPLEAS+CPLVKK Sbjct: 362 IPAYLFEVKKPEESKGPWDYYKLVATIAPEDAAKPLEASECPLVKK 407 >ref|YP_001239762.1| putative ABC transporter substrate binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ35856.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 408 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/408 (84%), Positives = 369/408 (90%) Query: 1 MTTTFARRCAALLACAALGLSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVVAIKMAVE 60 MTT+ ARR AALLA L + SAFA DK VKIGVLNDMSSLYADIGGPNSV AI MAVE Sbjct: 1 MTTSHARRMAALLAATTLSFAGSAFADDKVVKIGVLNDMSSLYADIGGPNSVAAINMAVE 60 Query: 61 DSGLLKKGWKIDVLSGDHQNKPDVGVNIARQWVDNEKVDAIADTPNSGVALAVNNLAKEK 120 DSG+ KGW I+V+SGDHQNKPD+GVNI RQW+D +KVD I DTPNSGVALAV+NL KEK Sbjct: 61 DSGMKAKGWTIEVISGDHQNKPDIGVNIGRQWIDTQKVDVIMDTPNSGVALAVSNLVKEK 120 Query: 121 NIVLLNSGAATADLTGKACTPNTISYTYDTYMLANGTGKALTKAGGDTWFFLTADYAFGH 180 N +L+NSG A+ADLTGKAC NTISYTYDTYMLANGTGKALTKAGGD+WFFLTADYAFGH Sbjct: 121 NSILINSGGASADLTGKACNANTISYTYDTYMLANGTGKALTKAGGDSWFFLTADYAFGH 180 Query: 181 ALERDTTAVVNGNGGKVLGSVKHPINTADFSSFLLQAQSSKAKVVGLANAGGDTTNAIKQ 240 ALERDT+AVV NGGKVLGSVKHP+NTADFSSFLLQAQSSKAKV+GLANAGGDTTNAIKQ Sbjct: 181 ALERDTSAVVTANGGKVLGSVKHPLNTADFSSFLLQAQSSKAKVIGLANAGGDTTNAIKQ 240 Query: 241 AAEFGIVSGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDMNDQTRAWSKRFSALAS 300 A+EFGIV GGQKLAALLLF+NDVH+LGLK AQGLTFTESFYWD+ND+TR WSKRF L+ Sbjct: 241 ASEFGIVQGGQKLAALLLFVNDVHALGLKVAQGLTFTESFYWDLNDKTREWSKRFQKLSP 300 Query: 301 KNAMPSMTQAGNYAMVLHYLKAMEALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGR 360 K MPSMT AG YA LHYLK ++ALGGNPHDGAKVVAKMKE+PTDDPLFGKGPLRADGR Sbjct: 301 KGTMPSMTVAGVYAGTLHYLKTLDALGGNPHDGAKVVAKMKEIPTDDPLFGKGPLRADGR 360 Query: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASDCPLVKK 408 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEAS+CPLVKK Sbjct: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASECPLVKK 408 >ref|YP_001205297.1| putative ABC transporter substrate binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77066.1| putative ABC transporter, substrate binding protein [Bradyrhizobium sp. ORS 278] Length = 408 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/408 (84%), Positives = 369/408 (90%) Query: 1 MTTTFARRCAALLACAALGLSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVVAIKMAVE 60 MTT+ ARR AALLA L + SAFA DK VKIGVLNDMSSLYADIGGPNSV AI MAVE Sbjct: 1 MTTSHARRIAALLAATTLSFAGSAFADDKVVKIGVLNDMSSLYADIGGPNSVAAINMAVE 60 Query: 61 DSGLLKKGWKIDVLSGDHQNKPDVGVNIARQWVDNEKVDAIADTPNSGVALAVNNLAKEK 120 DSGL KGW I+V+SGDHQNKPD+GVNI RQW+D +KVD I DTPNSGVALAV+NL K+K Sbjct: 61 DSGLKAKGWTIEVISGDHQNKPDIGVNIGRQWIDTQKVDVIMDTPNSGVALAVSNLVKDK 120 Query: 121 NIVLLNSGAATADLTGKACTPNTISYTYDTYMLANGTGKALTKAGGDTWFFLTADYAFGH 180 N+VL+NSG ATADLTGKAC NTIS+TYDTYMLANGTGKALTK+GGD+WFFLTADYAFG Sbjct: 121 NVVLINSGGATADLTGKACNANTISFTYDTYMLANGTGKALTKSGGDSWFFLTADYAFGQ 180 Query: 181 ALERDTTAVVNGNGGKVLGSVKHPINTADFSSFLLQAQSSKAKVVGLANAGGDTTNAIKQ 240 ALERDT+AVV NGGKVLGSVKHP+NTADFSSFLLQAQSSKAKV+GLANAGGDTTNAIKQ Sbjct: 181 ALERDTSAVVTANGGKVLGSVKHPLNTADFSSFLLQAQSSKAKVIGLANAGGDTTNAIKQ 240 Query: 241 AAEFGIVSGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDMNDQTRAWSKRFSALAS 300 A+EFGIV GGQKLAALLLF+NDVH+LGLK AQGLTFTESFYWD+N+QTRAWS RF L+ Sbjct: 241 ASEFGIVQGGQKLAALLLFVNDVHALGLKVAQGLTFTESFYWDLNEQTRAWSNRFIKLSP 300 Query: 301 KNAMPSMTQAGNYAMVLHYLKAMEALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGR 360 K MPSMT AGNYA LHYLKA+EALGGNPHDGAKVVAKMKE+PTDDPLFGKGPLRADGR Sbjct: 301 KGTMPSMTVAGNYAGTLHYLKALEALGGNPHDGAKVVAKMKEIPTDDPLFGKGPLRADGR 360 Query: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASDCPLVKK 408 RLIPAYLFEVKKPEESKYPWDYYKLIATI EDAAKPLEAS+CPLVKK Sbjct: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIPAEDAAKPLEASECPLVKK 408 >ref|YP_486066.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] gb|ABD07155.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] Length = 408 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/408 (77%), Positives = 355/408 (87%) Query: 1 MTTTFARRCAALLACAALGLSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVVAIKMAVE 60 M F+ R A +A A ++ AFAQDKT KIGVLNDMSSLYADIGGPNSVVA K+A+ Sbjct: 1 MRVIFSCRRAVAIALAGAAFASPAFAQDKTAKIGVLNDMSSLYADIGGPNSVVAAKLAIA 60 Query: 61 DSGLLKKGWKIDVLSGDHQNKPDVGVNIARQWVDNEKVDAIADTPNSGVALAVNNLAKEK 120 DSGL KKGWKID++ GDHQNKPD+GVN+ARQW+D +KVD I DTPNSGVALAV+NL KEK Sbjct: 61 DSGLEKKGWKIDLVVGDHQNKPDIGVNVARQWIDVDKVDMITDTPNSGVALAVSNLVKEK 120 Query: 121 NIVLLNSGAATADLTGKACTPNTISYTYDTYMLANGTGKALTKAGGDTWFFLTADYAFGH 180 NI+L+NSG A+ADLTGK CTPNTIS TYDTYMLA+GTG+ALTKAGG+TWFFLTADYAFG Sbjct: 121 NIILMNSGGASADLTGKQCTPNTISMTYDTYMLAHGTGQALTKAGGNTWFFLTADYAFGA 180 Query: 181 ALERDTTAVVNGNGGKVLGSVKHPINTADFSSFLLQAQSSKAKVVGLANAGGDTTNAIKQ 240 ALERDTTAVV NGG+VLG VKHP+NTADFSSFLLQAQ+SKAKV+GLANAGGDTTN+IKQ Sbjct: 181 ALERDTTAVVKANGGQVLGGVKHPLNTADFSSFLLQAQASKAKVIGLANAGGDTTNSIKQ 240 Query: 241 AAEFGIVSGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDMNDQTRAWSKRFSALAS 300 A+EFGI +GGQKLAALLLFINDVHSLGLK AQGLTFTES+YWD+ND TRA++KRFS A Sbjct: 241 ASEFGITAGGQKLAALLLFINDVHSLGLKVAQGLTFTESYYWDLNDNTRAFAKRFSEQAK 300 Query: 301 KNAMPSMTQAGNYAMVLHYLKAMEALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGR 360 NA PSMTQAG YA VLHYLK +EA+GGNPHDGAKVVAKMKE+P DD FGK +RADGR Sbjct: 301 NNAKPSMTQAGVYAAVLHYLKTLEAMGGNPHDGAKVVAKMKEIPADDTPFGKSIIRADGR 360 Query: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASDCPLVKK 408 R++PA+LFEVK P ESK PWDYYK IA I+ EDAA+PL S+CPLVKK Sbjct: 361 RMVPAFLFEVKSPAESKAPWDYYKKIADISAEDAARPLADSECPLVKK 408 >ref|YP_570126.1| putative urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris BisB5] gb|ABE40225.1| putative urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris BisB5] Length = 408 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/408 (75%), Positives = 354/408 (86%) Query: 1 MTTTFARRCAALLACAALGLSTSAFAQDKTVKIGVLNDMSSLYADIGGPNSVVAIKMAVE 60 M F+RR A +A A+ ++ AQDKT KIGVLNDMSSLYADIGGPNSVV+ K+A+ Sbjct: 1 MRVVFSRRHAVAIALASAAFTSPVLAQDKTAKIGVLNDMSSLYADIGGPNSVVSAKLAIA 60 Query: 61 DSGLLKKGWKIDVLSGDHQNKPDVGVNIARQWVDNEKVDAIADTPNSGVALAVNNLAKEK 120 DSGL KGWKI++L+GDHQNKPD+GVN+ARQW+D +KVD I DTPNSGVALA++NL KEK Sbjct: 61 DSGLEAKGWKIELLAGDHQNKPDIGVNVARQWIDVDKVDLITDTPNSGVALAISNLVKEK 120 Query: 121 NIVLLNSGAATADLTGKACTPNTISYTYDTYMLANGTGKALTKAGGDTWFFLTADYAFGH 180 N +L+NSG A+ADLTGK CTPNTIS TYDTYMLA+GTG+ALTKAGG++WFFLTADYAFG Sbjct: 121 NSILMNSGGASADLTGKQCTPNTISMTYDTYMLAHGTGQALTKAGGNSWFFLTADYAFGA 180 Query: 181 ALERDTTAVVNGNGGKVLGSVKHPINTADFSSFLLQAQSSKAKVVGLANAGGDTTNAIKQ 240 ALERDTTAVV NGG+VLG VKHP+NTADFSSFLLQAQ+SKAKV+GLANAGGDTTN+IKQ Sbjct: 181 ALERDTTAVVKANGGQVLGGVKHPLNTADFSSFLLQAQASKAKVIGLANAGGDTTNSIKQ 240 Query: 241 AAEFGIVSGGQKLAALLLFINDVHSLGLKTAQGLTFTESFYWDMNDQTRAWSKRFSALAS 300 A+EFGI +GGQKLAALLLF+NDVHSLGLK AQGLTFTES+YWD+ND TRA++KRFS + Sbjct: 241 ASEFGITAGGQKLAALLLFVNDVHSLGLKVAQGLTFTESYYWDLNDNTRAFAKRFSEQSK 300 Query: 301 KNAMPSMTQAGNYAMVLHYLKAMEALGGNPHDGAKVVAKMKELPTDDPLFGKGPLRADGR 360 NA PSMTQAG YA VLHYLK ++A+GGNPHDGAKVVAKMKE+P DD FGK +RADGR Sbjct: 301 NNAKPSMTQAGVYAAVLHYLKTLDAMGGNPHDGAKVVAKMKEIPADDVPFGKSVIRADGR 360 Query: 361 RLIPAYLFEVKKPEESKYPWDYYKLIATIAPEDAAKPLEASDCPLVKK 408 RL+PAYLFEVK P ESK PWDYYK IA I+ EDAA+PL S+CPLVKK Sbjct: 361 RLVPAYLFEVKSPAESKGPWDYYKKIADISAEDAARPLSESECPLVKK 408