BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0011.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770687.1| hypothetical protein blr4047 [Bradyrhizobium ja... 289 2e-76 ref|YP_532148.1| NnrU [Rhodopseudomonas palustris BisB18] >gi|90... 269 2e-70 ref|YP_001239754.1| hypothetical protein BBta_3770 [Bradyrhizobi... 265 2e-69 ref|YP_001205739.1| hypothetical protein BRADO3742 [Bradyrhizobi... 263 8e-69 ref|ZP_08629494.1| NnrU family protein [Bradyrhizobiaceae bacter... 260 6e-68 >ref|NP_770687.1| hypothetical protein blr4047 [Bradyrhizobium japonicum USDA 110] dbj|BAC49312.1| blr4047 [Bradyrhizobium japonicum USDA 110] Length = 194 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/183 (79%), Positives = 157/183 (85%) Query: 1 VGLLVMILGLVLLLGVHVLSSLREIRAGLIKAMGEGTYKIAYSLASAAGLVLIIWGFAHY 60 +GLLVMILGLVL HV ++ RE RA I +GEGTYKI Y+L S AGL LIIWGF HY Sbjct: 1 MGLLVMILGLVLFFAAHVFTTKREARAQAIARLGEGTYKILYALVSLAGLALIIWGFGHY 60 Query: 61 RATGWIDVWTPPTAFKHIAVALMLPAVILVVASYLRGRIYTTLKHPMLAGVKLWAFAHLL 120 RATGWIDVW PP A KHI +ALMLPAVILVVASYLRGRIY TLKHPMLAG+KLWA AHLL Sbjct: 61 RATGWIDVWYPPKAMKHITLALMLPAVILVVASYLRGRIYATLKHPMLAGIKLWAAAHLL 120 Query: 121 ANGDLGSIILFGSFLGWAVYDRISLKRRTDAGAPPIPVGGPTNDLIAIAVGVIVYLALAF 180 ANGDLGSIILFGSFLGWAV+DRISLK RTDAG PPIPVGG +NDLIA+AVGV+ YLALAF Sbjct: 121 ANGDLGSIILFGSFLGWAVFDRISLKHRTDAGGPPIPVGGVSNDLIAVAVGVVAYLALAF 180 Query: 181 AFH 183 AFH Sbjct: 181 AFH 183 >ref|YP_532148.1| NnrU [Rhodopseudomonas palustris BisB18] gb|ABD87829.1| NnrU [Rhodopseudomonas palustris BisB18] Length = 194 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 135/194 (69%), Positives = 160/194 (82%) Query: 1 VGLLVMILGLVLLLGVHVLSSLREIRAGLIKAMGEGTYKIAYSLASAAGLVLIIWGFAHY 60 +GL +MILGL L +GVH +++ R++RA LI G+ YKI Y++ + G+ LI +GF Y Sbjct: 1 MGLAIMILGLALFVGVHAVTTQRDLRARLIGFGGDAVYKIGYAILAIVGIALISYGFGSY 60 Query: 61 RATGWIDVWTPPTAFKHIAVALMLPAVILVVASYLRGRIYTTLKHPMLAGVKLWAFAHLL 120 RA G ID+W PP KH+A ALMLPAVI+VV++YLRGRIYTTLKHPML GVK WA AHL+ Sbjct: 61 RAAGMIDIWHPPLWTKHLAAALMLPAVIMVVSAYLRGRIYTTLKHPMLTGVKTWAVAHLI 120 Query: 121 ANGDLGSIILFGSFLGWAVYDRISLKRRTDAGAPPIPVGGPTNDLIAIAVGVIVYLALAF 180 ANGDLGSIILFG+ LGWAV+DRISLKRR+D G+PPIPVGGP NDLIAIAVG+I YLALAF Sbjct: 121 ANGDLGSIILFGTLLGWAVFDRISLKRRSDPGSPPIPVGGPKNDLIAIAVGIIAYLALAF 180 Query: 181 AFHPVVIGVPVMGA 194 AFHPVVIGVPV GA Sbjct: 181 AFHPVVIGVPVFGA 194 >ref|YP_001239754.1| hypothetical protein BBta_3770 [Bradyrhizobium sp. BTAi1] gb|ABQ35848.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 191 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 161/190 (84%), Gaps = 1/190 (0%) Query: 5 VMILGLVLLLGVHVLSSLREIRAGLIKAMGEGTYKIAYSLASAAGLVLIIWGFAHYR-AT 63 +M++GLVL LG HV ++ RE RA +I +GEGTYK+AY++ + AGL LI+WGFA YR Sbjct: 1 MMVVGLVLFLGAHVFTTRREARAQVIARLGEGTYKLAYTVVALAGLALIVWGFAEYRNGG 60 Query: 64 GWIDVWTPPTAFKHIAVALMLPAVILVVASYLRGRIYTTLKHPMLAGVKLWAFAHLLANG 123 GWI +WTPP A KHI +ALMLPAVI++VA+Y+RGRIYTTLKHPMLAGVKLWAF HLLANG Sbjct: 61 GWIQLWTPPKALKHINLALMLPAVIMMVAAYIRGRIYTTLKHPMLAGVKLWAFGHLLANG 120 Query: 124 DLGSIILFGSFLGWAVYDRISLKRRTDAGAPPIPVGGPTNDLIAIAVGVIVYLALAFAFH 183 DLG IILFGS L WAV+DRISLKRR DAG PPIPVGG ND+IA+ +G++VYLAL FAFH Sbjct: 121 DLGGIILFGSILAWAVFDRISLKRRADAGGPPIPVGGVGNDVIAVVIGIVVYLALTFAFH 180 Query: 184 PVVIGVPVMG 193 PVV+G+PVMG Sbjct: 181 PVVLGIPVMG 190 >ref|YP_001205739.1| hypothetical protein BRADO3742 [Bradyrhizobium sp. ORS 278] emb|CAL77513.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 191 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 161/190 (84%), Gaps = 1/190 (0%) Query: 5 VMILGLVLLLGVHVLSSLREIRAGLIKAMGEGTYKIAYSLASAAGLVLIIWGFAHYR-AT 63 +M++GL L LG HV ++ RE RA +I +GEGTYK+AY++ + AGL LI+WGFA YR Sbjct: 1 MMVVGLALFLGAHVFTTRREARAQVIARLGEGTYKLAYTIVALAGLALIVWGFAEYRNGG 60 Query: 64 GWIDVWTPPTAFKHIAVALMLPAVILVVASYLRGRIYTTLKHPMLAGVKLWAFAHLLANG 123 GWI +WTPP A KHI +ALMLPAVI++VA+Y+RGRIYTTLKHPML+GVKLWAF HLLANG Sbjct: 61 GWIQLWTPPKALKHINLALMLPAVIMIVAAYIRGRIYTTLKHPMLSGVKLWAFGHLLANG 120 Query: 124 DLGSIILFGSFLGWAVYDRISLKRRTDAGAPPIPVGGPTNDLIAIAVGVIVYLALAFAFH 183 DLG IILFGS L WAV+DRISLKRR DAG PPIPVGG ND+IA+ VG+IVYLALAFAFH Sbjct: 121 DLGGIILFGSILAWAVFDRISLKRRADAGGPPIPVGGVGNDVIAVVVGIIVYLALAFAFH 180 Query: 184 PVVIGVPVMG 193 PVV+G+PV+G Sbjct: 181 PVVLGIPVIG 190 >ref|ZP_08629494.1| NnrU family protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07987.1| NnrU family protein [Bradyrhizobiaceae bacterium SG-6C] Length = 194 Score = 260 bits (665), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 145/194 (74%), Positives = 164/194 (84%) Query: 1 VGLLVMILGLVLLLGVHVLSSLREIRAGLIKAMGEGTYKIAYSLASAAGLVLIIWGFAHY 60 +GLL++I GL LGVH L++LR RA +I +GEG YKI Y+L S AGL LI WGF+ Y Sbjct: 1 MGLLILIAGLAFFLGVHTLTTLRGPRATVIARLGEGGYKILYTLLSFAGLGLIAWGFSMY 60 Query: 61 RATGWIDVWTPPTAFKHIAVALMLPAVILVVASYLRGRIYTTLKHPMLAGVKLWAFAHLL 120 RATGWI+VW PP A +H+ +ALMLPAVILVVASY+RGRIYTT+KHPMLAGVKLWA HLL Sbjct: 61 RATGWINVWYPPVALRHLVLALMLPAVILVVASYIRGRIYTTVKHPMLAGVKLWALLHLL 120 Query: 121 ANGDLGSIILFGSFLGWAVYDRISLKRRTDAGAPPIPVGGPTNDLIAIAVGVIVYLALAF 180 ANGDLGSIILFGS L WAVYDRISLKRR D GAPPIPVGG NDLIA+AVGV+VY ALAF Sbjct: 121 ANGDLGSIILFGSVLAWAVYDRISLKRREDPGAPPIPVGGVGNDLIAVAVGVVVYAALAF 180 Query: 181 AFHPVVIGVPVMGA 194 AFHP+VIGVPV+GA Sbjct: 181 AFHPLVIGVPVIGA 194