BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0009.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205734.1| peptide chain release factor RF-3/GTP-bindin... 1013 0.0 ref|YP_001239746.1| peptide chain release factor 3 [Bradyrhizobi... 1009 0.0 ref|ZP_01047356.1| peptide chain release factor 3 [Nitrobacter s... 1006 0.0 ref|NP_770685.1| peptide chain release factor 3 [Bradyrhizobium ... 1004 0.0 ref|YP_486766.1| peptide chain release factor 3 [Rhodopseudomona... 998 0.0 >ref|YP_001205734.1| peptide chain release factor RF-3/GTP-binding factor [Bradyrhizobium sp. ORS 278] emb|CAL77508.1| peptide chain release factor RF-3; GTP-binding factor [Bradyrhizobium sp. ORS 278] Length = 539 Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/539 (90%), Positives = 520/539 (96%) Query: 1 MSDISVSAESPSRSPLSEEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 MSDI+V+ + PSRSPL++EVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG Sbjct: 1 MSDIAVTTDQPSRSPLADEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 Query: 61 ERRNTRSDWMKIERERGISVVTSVMTFEFNDLVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 ERRNTRSDWMKIERERGISVVTSVMTFEF LVFNLLDTPGHEDFSEDTYRTLTAVDSAV Sbjct: 61 ERRNTRSDWMKIERERGISVVTSVMTFEFEGLVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 Query: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFELLDEIEKTLALDTTPMT 180 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTF+LLDEIEKTLALDTTPMT Sbjct: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFDLLDEIEKTLALDTTPMT 180 Query: 181 WPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGATEQIDIADLGKRNPNLDVAEVKDELALA 240 WPVGRGRDF+GTYDV +GGVRLLEGGGAKTGA +QI I++LGK N NLD+ ++ DEL L Sbjct: 181 WPVGRGRDFIGTYDVRDGGVRLLEGGGAKTGAAQQIAISELGKLNANLDMGQITDELELV 240 Query: 241 SEACKPFELAAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPAPRAQDSDLRKVEASEP 300 EACKPFEL AFREGHLTPVYFGSALRNFGVGDLLEGLG++AP+PRAQDS+LRKV+A+EP Sbjct: 241 KEACKPFELDAFREGHLTPVYFGSALRNFGVGDLLEGLGRYAPSPRAQDSNLRKVDAAEP 300 Query: 301 RMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKNMSLSSPQFFFAQDRS 360 RMSAFVFKIQANMDPNHRDRIAFARLCSGKL+RGMKAKLVRTGK M LSSPQFFFAQDRS Sbjct: 301 RMSAFVFKIQANMDPNHRDRIAFARLCSGKLNRGMKAKLVRTGKTMPLSSPQFFFAQDRS 360 Query: 361 VADEAFAGDVVGIPNHGTLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 VADEAFAGDVVGIPNHG+LRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE Sbjct: 361 VADEAFAGDVVGIPNHGSLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 Query: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEVSEFSLARWI 480 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFE+SEFSLARWI Sbjct: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEISEFSLARWI 480 Query: 481 SSDDRKQLDAFIAANNSGIADDVDGDPVFMAKNEFYLGYTRERAEGITFSNVKDVKKKA 539 S DD+K+L+AFIA+NNSG+ADDVDGDPVF+AKNEFYLGYT+ERAEGI FSNVKDVKKKA Sbjct: 481 SCDDKKKLEAFIASNNSGVADDVDGDPVFLAKNEFYLGYTKERAEGIVFSNVKDVKKKA 539 >ref|YP_001239746.1| peptide chain release factor 3 [Bradyrhizobium sp. BTAi1] gb|ABQ35840.1| bacterial peptide chain release factor 3 (bRF-3) [Bradyrhizobium sp. BTAi1] Length = 539 Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/539 (90%), Positives = 520/539 (96%) Query: 1 MSDISVSAESPSRSPLSEEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 MSD +V+ E P+R+ LS+EVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG Sbjct: 1 MSDTAVTTEQPARTALSDEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 Query: 61 ERRNTRSDWMKIERERGISVVTSVMTFEFNDLVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 ERRNTRSDWMKIERERGISVVTSVMTFEF LVFNLLDTPGHEDFSEDTYRTLTAVDSAV Sbjct: 61 ERRNTRSDWMKIERERGISVVTSVMTFEFEGLVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 Query: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFELLDEIEKTLALDTTPMT 180 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTF+LLDEIEKTLALDTTPMT Sbjct: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFDLLDEIEKTLALDTTPMT 180 Query: 181 WPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGATEQIDIADLGKRNPNLDVAEVKDELALA 240 WPVGRGRDF+GTYD+ +GGVRLLEGGGAKTGA +QI+I++LGK N NLD++++ DEL L Sbjct: 181 WPVGRGRDFIGTYDIRDGGVRLLEGGGAKTGAAQQIEISELGKINANLDMSQITDELELV 240 Query: 241 SEACKPFELAAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPAPRAQDSDLRKVEASEP 300 EACKPFEL AFREGHLTPVYFGSALRNFGVGDLLEGLG++AP+PRAQ+S+LRKV+A+EP Sbjct: 241 REACKPFELDAFREGHLTPVYFGSALRNFGVGDLLEGLGRYAPSPRAQESNLRKVDAAEP 300 Query: 301 RMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKNMSLSSPQFFFAQDRS 360 RMSAFVFKIQANMDPNHRDRIAFARLCSGKL+RGMKAKLVRTGK M LSSPQFFFAQDRS Sbjct: 301 RMSAFVFKIQANMDPNHRDRIAFARLCSGKLNRGMKAKLVRTGKTMPLSSPQFFFAQDRS 360 Query: 361 VADEAFAGDVVGIPNHGTLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 VADEAFAGDVVGIPNHG+LRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE Sbjct: 361 VADEAFAGDVVGIPNHGSLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 Query: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEVSEFSLARWI 480 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFE+SEFSLARWI Sbjct: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEISEFSLARWI 480 Query: 481 SSDDRKQLDAFIAANNSGIADDVDGDPVFMAKNEFYLGYTRERAEGITFSNVKDVKKKA 539 S DD+K+L+AFIAANNSG+ADDVDGDPVF+AKNEFYLGYT+ERAEGI FSNVKDVKKKA Sbjct: 481 SCDDKKKLEAFIAANNSGVADDVDGDPVFLAKNEFYLGYTKERAEGIVFSNVKDVKKKA 539 >ref|ZP_01047356.1| peptide chain release factor 3 [Nitrobacter sp. Nb-311A] gb|EAQ34627.1| peptide chain release factor 3 [Nitrobacter sp. Nb-311A] Length = 539 Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/538 (91%), Positives = 515/538 (95%) Query: 1 MSDISVSAESPSRSPLSEEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 MSD+++ ES S SPL+ EVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG Sbjct: 1 MSDLALQDESTSTSPLAAEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKG 60 Query: 61 ERRNTRSDWMKIERERGISVVTSVMTFEFNDLVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 ERRNTRSDWMKIER+RGISVVTSVMTFEF + VFNLLDTPGHEDFSEDTYRTLTAVDSAV Sbjct: 61 ERRNTRSDWMKIERDRGISVVTSVMTFEFENRVFNLLDTPGHEDFSEDTYRTLTAVDSAV 120 Query: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFELLDEIEKTLALDTTPMT 180 MVIDAAKGIEARTRKLFEVCRLRDIPI+TFINKMDRESRDTFELLDEIEKTLALDTTPMT Sbjct: 121 MVIDAAKGIEARTRKLFEVCRLRDIPIVTFINKMDRESRDTFELLDEIEKTLALDTTPMT 180 Query: 181 WPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGATEQIDIADLGKRNPNLDVAEVKDELALA 240 WPVGRGRDFLGTYD+ GG+RLLEGGGAKTGATEQIDIADL RN NL+V E++DELALA Sbjct: 181 WPVGRGRDFLGTYDIATGGIRLLEGGGAKTGATEQIDIADLAARNANLNVDEIRDELALA 240 Query: 241 SEACKPFELAAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPAPRAQDSDLRKVEASEP 300 +EACKPFEL AFREGHLTPVYFGSALRNFGVGDLLEGLGKFAP PRAQ+S+LRKVEA EP Sbjct: 241 TEACKPFELEAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPPPRAQESNLRKVEADEP 300 Query: 301 RMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKNMSLSSPQFFFAQDRS 360 RM+AFVFKIQANMDPNHRDRIAFARLCSGKL+RGMKAKLVRTGK M LSSPQFFFAQDR+ Sbjct: 301 RMTAFVFKIQANMDPNHRDRIAFARLCSGKLTRGMKAKLVRTGKPMPLSSPQFFFAQDRA 360 Query: 361 VADEAFAGDVVGIPNHGTLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 +ADEAFAGDVVGIPNHGTLRIGDTLTEGED+TFVGVPSFAPEIVRRVRLTDAMKAKKLKE Sbjct: 361 IADEAFAGDVVGIPNHGTLRIGDTLTEGEDVTFVGVPSFAPEIVRRVRLTDAMKAKKLKE 420 Query: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEVSEFSLARWI 480 ALQQMSEEGVVQVFRPRDGAPALVGVVG LQLDVLKARLDAEYSLPV+FEV EF LARWI Sbjct: 421 ALQQMSEEGVVQVFRPRDGAPALVGVVGMLQLDVLKARLDAEYSLPVDFEVCEFQLARWI 480 Query: 481 SSDDRKQLDAFIAANNSGIADDVDGDPVFMAKNEFYLGYTRERAEGITFSNVKDVKKK 538 SSDDRK+LDAFIAAN SG+ADDVDGDPVF+AKNEFYLGYTRERAEGI FS+VKDVKKK Sbjct: 481 SSDDRKKLDAFIAANGSGVADDVDGDPVFLAKNEFYLGYTRERAEGIVFSSVKDVKKK 538 >ref|NP_770685.1| peptide chain release factor 3 [Bradyrhizobium japonicum USDA 110] dbj|BAC49310.1| peptide chain release factor 3 [Bradyrhizobium japonicum USDA 110] Length = 540 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/539 (91%), Positives = 512/539 (94%), Gaps = 1/539 (0%) Query: 1 MSDI-SVSAESPSRSPLSEEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAK 59 MSDI + +AESP+RSPL+ EVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAK Sbjct: 1 MSDIATTTAESPARSPLAAEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAK 60 Query: 60 GERRNTRSDWMKIERERGISVVTSVMTFEFNDLVFNLLDTPGHEDFSEDTYRTLTAVDSA 119 GERRNTRSDWMKIERERGISVVTSVMTFEF LVFNLLDTPGHEDFSEDTYRTLTAVDSA Sbjct: 61 GERRNTRSDWMKIERERGISVVTSVMTFEFEGLVFNLLDTPGHEDFSEDTYRTLTAVDSA 120 Query: 120 VMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFELLDEIEKTLALDTTPM 179 VMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRD FELLDEIEKTLALDTTPM Sbjct: 121 VMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDVFELLDEIEKTLALDTTPM 180 Query: 180 TWPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGATEQIDIADLGKRNPNLDVAEVKDELAL 239 TWPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGA +QI+I +L K N NLDV+ VKDEL L Sbjct: 181 TWPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGAAQQIEIEELAKLNANLDVSAVKDELEL 240 Query: 240 ASEACKPFELAAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPAPRAQDSDLRKVEASE 299 +EA KPFEL AFREGHLTPVYFGSALRNFGVGDLLEGLGKFAP PRAQ+SD RKVEA++ Sbjct: 241 VTEASKPFELEAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPEPRAQESDQRKVEATD 300 Query: 300 PRMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKNMSLSSPQFFFAQDR 359 PRMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGK+M LSSPQFFFAQDR Sbjct: 301 PRMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKSMPLSSPQFFFAQDR 360 Query: 360 SVADEAFAGDVVGIPNHGTLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKLK 419 SVADEAFAGDVVGIPNHGTLRIGDTLTEGED FVGVPSFAPEIVRRVRLTDAMKAKKLK Sbjct: 361 SVADEAFAGDVVGIPNHGTLRIGDTLTEGEDFNFVGVPSFAPEIVRRVRLTDAMKAKKLK 420 Query: 420 EALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEVSEFSLARW 479 EALQQMSEEGVVQVFRPRDGAPALVGVVG LQLDVLKARL+AEYSLPVEFEVSEF LARW Sbjct: 421 EALQQMSEEGVVQVFRPRDGAPALVGVVGALQLDVLKARLEAEYSLPVEFEVSEFQLARW 480 Query: 480 ISSDDRKQLDAFIAANNSGIADDVDGDPVFMAKNEFYLGYTRERAEGITFSNVKDVKKK 538 +SSDDRK+LD FIAAN S IADDVDGDPV++A+NEFYLGYTRERAEGI F+NVKDVKKK Sbjct: 481 VSSDDRKKLDTFIAANTSSIADDVDGDPVYLARNEFYLGYTRERAEGIEFTNVKDVKKK 539 >ref|YP_486766.1| peptide chain release factor 3 [Rhodopseudomonas palustris HaA2] gb|ABD07855.1| bacterial peptide chain release factor 3 (bRF-3) [Rhodopseudomonas palustris HaA2] Length = 541 Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/541 (89%), Positives = 514/541 (95%), Gaps = 2/541 (0%) Query: 1 MSDISVSAESPSRSP--LSEEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKA 58 MSDI++S ++PS+ P L+ EVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKA Sbjct: 1 MSDIAISTDAPSQPPSSLAHEVARRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKA 60 Query: 59 KGERRNTRSDWMKIERERGISVVTSVMTFEFNDLVFNLLDTPGHEDFSEDTYRTLTAVDS 118 KGERR TRSDWMKIER+RGISVVTSVMTFEF LVFNLLDTPGHEDFSEDTYRTLTAVDS Sbjct: 61 KGERRTTRSDWMKIERDRGISVVTSVMTFEFEGLVFNLLDTPGHEDFSEDTYRTLTAVDS 120 Query: 119 AVMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFELLDEIEKTLALDTTP 178 AVMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTF++LDEIEKTLALDTTP Sbjct: 121 AVMVIDAAKGIEARTRKLFEVCRLRDIPIITFINKMDRESRDTFDILDEIEKTLALDTTP 180 Query: 179 MTWPVGRGRDFLGTYDVVNGGVRLLEGGGAKTGATEQIDIADLGKRNPNLDVAEVKDELA 238 MTWPVGRGRDFLGTYDV+ GGVRLLEGGGAKTGA EQI I DLGKRNPNLDVA VK+EL Sbjct: 181 MTWPVGRGRDFLGTYDVLTGGVRLLEGGGAKTGAAEQIAIEDLGKRNPNLDVAAVKEELE 240 Query: 239 LASEACKPFELAAFREGHLTPVYFGSALRNFGVGDLLEGLGKFAPAPRAQDSDLRKVEAS 298 LA+EACKPF+L AFREGHLTPVYFGSALRNFGVGDLL+GLG++AP PRAQDS+LRKVEA Sbjct: 241 LATEACKPFDLEAFREGHLTPVYFGSALRNFGVGDLLQGLGRYAPPPRAQDSNLRKVEAD 300 Query: 299 EPRMSAFVFKIQANMDPNHRDRIAFARLCSGKLSRGMKAKLVRTGKNMSLSSPQFFFAQD 358 EP+MSAFVFKIQANMDPNHRDRIAFARLCSGKL+RGMKAKLVRTGKNMSLS+PQFFFAQD Sbjct: 301 EPKMSAFVFKIQANMDPNHRDRIAFARLCSGKLTRGMKAKLVRTGKNMSLSAPQFFFAQD 360 Query: 359 RSVADEAFAGDVVGIPNHGTLRIGDTLTEGEDLTFVGVPSFAPEIVRRVRLTDAMKAKKL 418 RSVADEAFAGDVVGIPNHGTLRIGDTLTEGED+TFVGVPSFAPEIVRRVRL DAMKAKKL Sbjct: 361 RSVADEAFAGDVVGIPNHGTLRIGDTLTEGEDVTFVGVPSFAPEIVRRVRLGDAMKAKKL 420 Query: 419 KEALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYSLPVEFEVSEFSLAR 478 KEALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEY LPV+FEVSEF LAR Sbjct: 421 KEALQQMSEEGVVQVFRPRDGAPALVGVVGPLQLDVLKARLDAEYQLPVDFEVSEFQLAR 480 Query: 479 WISSDDRKQLDAFIAANNSGIADDVDGDPVFMAKNEFYLGYTRERAEGITFSNVKDVKKK 538 WIS++DRK+LD FI NNS IADDVDGDPV++AKNEFYLGYTR+RAEGI FS +KDVKK Sbjct: 481 WISAEDRKKLDTFITTNNSSIADDVDGDPVYLAKNEFYLGYTRDRAEGIVFSEIKDVKKV 540 Query: 539 A 539 A Sbjct: 541 A 541