BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0004.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239742.1| putative ABC transporter permease [Bradyrhiz... 498 e-139 ref|YP_001205730.1| putative branched-chain amino acid transport... 496 e-138 ref|ZP_08629485.1| high-affinity branched-chain amino acid trans... 488 e-136 ref|NP_770680.1| ABC transporter permease protein [Bradyrhizobiu... 485 e-135 ref|NP_947622.1| inner-membrane translocator [Rhodopseudomonas p... 473 e-131 >ref|YP_001239742.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35836.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Bradyrhizobium sp. BTAi1] Length = 287 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 271/287 (94%), Positives = 286/287 (99%) Query: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLGGIN 60 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAF AYFLLNLGGIN Sbjct: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFCAYFLLNLGGIN 60 Query: 61 YWWALIIAPVVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSGLP 120 YWWAL++AP++VGIFGMILERT+LQWLTGLDHLYGLLLTFGIALIVQG+FQNYFGSSGLP Sbjct: 61 YWWALLLAPIIVGIFGMILERTLLQWLTGLDHLYGLLLTFGIALIVQGLFQNYFGSSGLP 120 Query: 121 YSIPDQLKGGVNLGFMFLPIYRGWVVIFSLVVCLATWFLIEKTQLGAYLRAATENPTLVR 180 Y+IPDQL+GG+NLGFMFLPIYRGWVV+FSL+VCLATWFLIE+T+LGAYLRAATENPTLVR Sbjct: 121 YAIPDQLRGGMNLGFMFLPIYRGWVVVFSLIVCLATWFLIERTRLGAYLRAATENPTLVR 180 Query: 181 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 AFG+NVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG Sbjct: 181 AFGVNVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 Query: 241 SIITGFALGVIEGLTKYFYPEASNTVVFVLMVVVLLVKPTGLTGRAA 287 SIITGFALGVIEGLTKYFYPEASNTVVFVLMV+VLLVKPTGLTGRAA Sbjct: 241 SIITGFALGVIEGLTKYFYPEASNTVVFVLMVLVLLVKPTGLTGRAA 287 >ref|YP_001205730.1| putative branched-chain amino acid transport permease [Bradyrhizobium sp. ORS 278] emb|CAL77504.1| putative ABC transporter, permease protein; putative branched-chain amino acid transport permease [Bradyrhizobium sp. ORS 278] Length = 287 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 269/287 (93%), Positives = 285/287 (99%) Query: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLGGIN 60 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAF AYFLLNLGGIN Sbjct: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFCAYFLLNLGGIN 60 Query: 61 YWWALIIAPVVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSGLP 120 YWWAL++AP++VG FGM+LERT+LQWLTGLDHLYGLLLTFGIALIVQG+FQNYFGSSGLP Sbjct: 61 YWWALLLAPIIVGAFGMVLERTLLQWLTGLDHLYGLLLTFGIALIVQGIFQNYFGSSGLP 120 Query: 121 YSIPDQLKGGVNLGFMFLPIYRGWVVIFSLVVCLATWFLIEKTQLGAYLRAATENPTLVR 180 Y+IPDQL+GG+NLGFMFLP+YRGWVV+FSLVVCLATWFLIE+T+LGAYLRAATENPTLVR Sbjct: 121 YAIPDQLRGGMNLGFMFLPVYRGWVVVFSLVVCLATWFLIERTRLGAYLRAATENPTLVR 180 Query: 181 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG Sbjct: 181 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 Query: 241 SIITGFALGVIEGLTKYFYPEASNTVVFVLMVVVLLVKPTGLTGRAA 287 SIITGFALGV+EGLTKYFYPEASNTVVFVLMV+VLLVKPTGLTGRAA Sbjct: 241 SIITGFALGVVEGLTKYFYPEASNTVVFVLMVLVLLVKPTGLTGRAA 287 >ref|ZP_08629485.1| high-affinity branched-chain amino acid transport system permease [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07978.1| high-affinity branched-chain amino acid transport system permease [Bradyrhizobiaceae bacterium SG-6C] Length = 287 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 268/286 (93%), Positives = 283/286 (98%) Query: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLGGIN 60 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNL GIN Sbjct: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLFGIN 60 Query: 61 YWWALIIAPVVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSGLP 120 YWWAL++AP++VG FG++LERTMLQWLTGLDHLYGLLLTFG+ALI+QG+FQNYFGSSGLP Sbjct: 61 YWWALLLAPLIVGAFGILLERTMLQWLTGLDHLYGLLLTFGLALIIQGLFQNYFGSSGLP 120 Query: 121 YSIPDQLKGGVNLGFMFLPIYRGWVVIFSLVVCLATWFLIEKTQLGAYLRAATENPTLVR 180 Y+IPD LKGGVNLGFM+LPIYRGWVV+FSLVVC+ATWFLIEKT+LGAYLRAATENPTLVR Sbjct: 121 YAIPDLLKGGVNLGFMYLPIYRGWVVVFSLVVCIATWFLIEKTRLGAYLRAATENPTLVR 180 Query: 181 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG Sbjct: 181 AFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMG 240 Query: 241 SIITGFALGVIEGLTKYFYPEASNTVVFVLMVVVLLVKPTGLTGRA 286 SIITGFALGVIEGLTKYFYPEASNTVVFVLMV+VLLVKPTGLTGRA Sbjct: 241 SIITGFALGVIEGLTKYFYPEASNTVVFVLMVLVLLVKPTGLTGRA 286 >ref|NP_770680.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49305.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 289 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 271/289 (93%), Positives = 282/289 (97%), Gaps = 2/289 (0%) Query: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLG--G 58 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLN Sbjct: 1 MQALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNNDYLS 60 Query: 59 INYWWALIIAPVVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSG 118 I YW ALI+AP+VVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSG Sbjct: 61 IGYWPALIVAPIVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSG 120 Query: 119 LPYSIPDQLKGGVNLGFMFLPIYRGWVVIFSLVVCLATWFLIEKTQLGAYLRAATENPTL 178 LPY+IPDQLKGG+NLGFMFLP+YRGWVV+FSL+VCLATW+LIEKT+LGAYLRAATENPTL Sbjct: 121 LPYAIPDQLKGGMNLGFMFLPVYRGWVVVFSLIVCLATWYLIEKTRLGAYLRAATENPTL 180 Query: 179 VRAFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSI 238 VRAFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSI Sbjct: 181 VRAFGINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSI 240 Query: 239 MGSIITGFALGVIEGLTKYFYPEASNTVVFVLMVVVLLVKPTGLTGRAA 287 MGSIITGFALGVIEGLTKYFYPEASNTVVFVLMV+VLLVKP+GLTGRAA Sbjct: 241 MGSIITGFALGVIEGLTKYFYPEASNTVVFVLMVLVLLVKPSGLTGRAA 289 >ref|NP_947622.1| inner-membrane translocator [Rhodopseudomonas palustris CGA009] ref|YP_001991507.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] emb|CAE27718.1| possible ABC transporter, permease protein [Rhodopseudomonas palustris CGA009] gb|ACF01032.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 291 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 255/284 (89%), Positives = 279/284 (98%) Query: 3 ALYAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFVAYFLLNLGGINYW 62 AL AQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAF AYFLLNL G+NYW Sbjct: 7 ALLAQLLVGLINGSFYALLSLGLAVIFGMLNIINFAHGALYMMGAFCAYFLLNLLGLNYW 66 Query: 63 WALIIAPVVVGIFGMILERTMLQWLTGLDHLYGLLLTFGIALIVQGVFQNYFGSSGLPYS 122 WALI++P++VG+FGM++ERT+LQWL+GLDHLYGLLLTFG+ALI+QGVFQNYFGSSGLPY+ Sbjct: 67 WALILSPIIVGLFGMVMERTLLQWLSGLDHLYGLLLTFGVALIIQGVFQNYFGSSGLPYA 126 Query: 123 IPDQLKGGVNLGFMFLPIYRGWVVIFSLVVCLATWFLIEKTQLGAYLRAATENPTLVRAF 182 IP+QL+G +NLGFM+LP+YRGWVV+FSLVVCL TWFLIE+T+LGAYLRAATENPTLVRAF Sbjct: 127 IPEQLRGAINLGFMYLPVYRGWVVVFSLVVCLLTWFLIERTRLGAYLRAATENPTLVRAF 186 Query: 183 GINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMGSI 242 GINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMGSI Sbjct: 187 GINVPRMITLTYGLGVGLAALAGVLSAPINQVRPLMGADLIIVVFAVVVIGGMGSIMGSI 246 Query: 243 ITGFALGVIEGLTKYFYPEASNTVVFVLMVVVLLVKPTGLTGRA 286 ITGFALGV+EGLTKYFYPEASNTVVFVLMV+VLLVKP+GLTGRA Sbjct: 247 ITGFALGVVEGLTKYFYPEASNTVVFVLMVLVLLVKPSGLTGRA 290