BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0208.0018.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767590.1| hypothetical protein bsl0950 [Bradyrhizobium ja...    64   6e-09
ref|YP_001243369.1| hypothetical protein BBta_7617 [Bradyrhizobi...    55   5e-06
ref|YP_001202739.1| hypothetical protein BRADO0559 [Bradyrhizobi...    51   7e-05
ref|YP_779112.1| hypothetical protein RPE_0172 [Rhodopseudomonas...    46   0.002
ref|YP_530395.1| hypothetical protein RPC_0501 [Rhodopseudomonas...    39   0.20 

>ref|NP_767590.1| hypothetical protein bsl0950 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46215.1| bsl0950 [Bradyrhizobium japonicum USDA 110]
          Length = 89

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 23 TALVPLAATTHWAPKIPLPHADPSFVAHLIATAAHEPQTCGQRRGSLADAQNAYGPHVDE 82
          +ALVPL  T  W  K PLP  DPSFV  LIA A H PQ    RR S  DA+ AYG     
Sbjct: 19 SALVPLLPTLQWVIKAPLPRPDPSFVTQLIANAEHLPQASRLRRASPEDARMAYG----S 74

Query: 83 RR---SVARRTRQI 93
          +R   SV+ RTRQ+
Sbjct: 75 KRPLGSVSARTRQV 88


>ref|YP_001243369.1| hypothetical protein BBta_7617 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39463.1| hypothetical protein BBta_7617 [Bradyrhizobium sp. BTAi1]
          Length = 93

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MPDIDQSEILDGECTGDAAAASTALVPL-AATTHWAPKIPLPHADPSFVAHLIATAAHEP 59
          M  IDQ +   G  T D A+    LV   A     APK+  P  D  FVAHLIA+A   P
Sbjct: 1  MLTIDQDQT--GPATADEASRCLTLVRTDAQVEQQAPKVRAPRPDAGFVAHLIASAEKLP 58

Query: 60 QTCGQRRGSLADAQNAYGPHVDERRSVARRTRQII 94
          QT   RR + ADA++AY   +    ++  RTRQ++
Sbjct: 59 QTRALRRAAPADAKSAYTAWLQPATALGGRTRQVV 93


>ref|YP_001202739.1| hypothetical protein BRADO0559 [Bradyrhizobium sp. ORS 278]
 emb|CAL74496.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 91

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 1  MPDIDQSEILDGECTGDAAAASTALVPLAATTHWAPKIPLPHADPSFVAHLIATAAHEPQ 60
          M  IDQ +   G C  D A  + AL+P   +     K+     D  FV  LIATA H PQ
Sbjct: 1  MLTIDQDQ---GSCGADEAPRAVALLPGTWSHERRVKVRAARPDAGFVTQLIATAEHLPQ 57

Query: 61 TCGQRRGSLADAQNAYGPHVDERRSVARRTRQII 94
          T   RR + AD  +AY   +        RTR+II
Sbjct: 58 TRTLRRAAAADVHSAYAARLQPATRAGDRTREII 91


>ref|YP_779112.1| hypothetical protein RPE_0172 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04132.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 94

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 20 AASTALVPLAATTHWAPKI-PLPHADPSFVAHLIATAAHEPQTCGQRRGSLADAQNAY 76
          A STAL  +  T     +I PLP  D SF+  LIATA + PQT   RR S ADAQ AY
Sbjct: 18 APSTALTLVRPTIEPLRQIRPLPRPDASFLTQLIATAENSPQTRTLRRASSADAQTAY 75


>ref|YP_530395.1| hypothetical protein RPC_0501 [Rhodopseudomonas palustris BisB18]
 gb|ABD86076.1| hypothetical protein RPC_0501 [Rhodopseudomonas palustris BisB18]
          Length = 99

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 21/37 (56%)

Query: 40 LPHADPSFVAHLIATAAHEPQTCGQRRGSLADAQNAY 76
          LP AD SFV HLIA     PQT   RR +  DA  AY
Sbjct: 42 LPRADASFVTHLIAIQQQSPQTRTLRRATSEDALAAY 78