BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0208.0016.p         (563 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001243368.1| diguanylate cyclase/phosphodiesterase [Brady...   910   0.0  
ref|YP_001202740.1| putative diguanylate cyclase/phosphodiestera...   894   0.0  
ref|NP_767591.1| hypothetical protein blr0951 [Bradyrhizobium ja...   888   0.0  
ref|YP_530396.1| diguanylate cyclase/phosphodiesterase [Rhodopse...   874   0.0  
ref|NP_945882.1| putative diguanylate cyclase/phosphodiesterase ...   864   0.0  

>ref|YP_001243368.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gb|ABQ39462.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 563

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/550 (79%), Positives = 489/550 (88%)

Query: 2   PPVPPAASILASLGQATFAWDLASDAIAWSDNVAAVFPDIPVAALASGAELAKLIEPSRS 61
           P +P  A+IL+SLGQA F WDLASD I WSD+V AVFPD+P+  L +G E  KLIEP R 
Sbjct: 3   PELPQTATILSSLGQAAFVWDLASDVIVWSDHVGAVFPDVPLPQLCNGTEFGKLIEPERG 62

Query: 62  VRSDALGAPAPVRSGEGVPYRIEYGVRAVTSAPVIWIEETGCWFAGADGRPARVQGVVRI 121
           VRS+A+   AP+   +G PYRIEYGVR  ++AP+IW+EETGCWFAG DGRPAR QG+VRI
Sbjct: 63  VRSEAMRQVAPLHGVDGTPYRIEYGVRTHSAAPLIWVEETGCWFAGPDGRPARAQGIVRI 122

Query: 122 NNERHARDEQLLKLSRHDPLTNELNRTHLIASLAETMEECARFRSSCAFMLIGIDHLARV 181
           NNERHARDEQLLKLSRHDPLT ELNRTHL+A+LAE +EE  RFR +CAFMLIGIDHLAR+
Sbjct: 123 NNERHARDEQLLKLSRHDPLTGELNRTHLLATLAEVIEESQRFRFACAFMLIGIDHLARI 182

Query: 182 NDAFGFDVADAVIAEVAKRIRARLRSGDMLGRFSGNKFGLILRNCTVDDTNVAAERFLAA 241
           NDAFGFDVAD V+ EVA+RIRARLR GD LGRFSGNKFGLIL+NCT+DD  VAAERFLAA
Sbjct: 183 NDAFGFDVADGVVLEVAQRIRARLRGGDTLGRFSGNKFGLILKNCTMDDMTVAAERFLAA 242

Query: 242 VRDEVVPTKSGPVSVTVSIGAVTLPRHARSAEEAVNRAQETLDAAKSRRAGSFALWKPNV 301
           VRDEVVPTKSGPV+VTV+IGAV++PRHARS EEAVNRA ETLD+AK RR GSF+ W+PNV
Sbjct: 243 VRDEVVPTKSGPVAVTVTIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNV 302

Query: 302 ERDAQRRVNIRVTDEIVTALNERRIVIGFEPVVDARLRQPAFYECLVRMEQDDGRALLAP 361
           ERDAQR+VNIRVTDEIVTALNERRIV  FEPVV A  RQ AFYECLVRM QDDGRA+LAP
Sbjct: 303 ERDAQRKVNIRVTDEIVTALNERRIVTAFEPVVHADTRQTAFYECLVRMRQDDGRAVLAP 362

Query: 362 DIVPVAERLGLIRLVDHRVLELAIAELAAAPGVQLSLNISPDTTMDPDWWATIESLMRAH 421
           DIVPVAERLGLIRLVDHR+LEL +AELA+AP V LSLNISP+TTMDPDWWA+IES+MRAH
Sbjct: 363 DIVPVAERLGLIRLVDHRILELVVAELASAPDVTLSLNISPETTMDPDWWASIESMMRAH 422

Query: 422 PGVGERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIV 481
           PGV ERLIVEITETV IQDIDD+RGFVTRLK+ GSRIAIDDFGAG+TSFRNLRKLGVDIV
Sbjct: 423 PGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRNLRKLGVDIV 482

Query: 482 KIDGAFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDEEAAVMLREWGCDFIQGRL 541
           KIDGAFVQN+ RSADDRAFVQTL++LARRL+IKTVAEWVQD+ +  +LR+WGCD+IQGRL
Sbjct: 483 KIDGAFVQNLARSADDRAFVQTLVELARRLQIKTVAEWVQDDSSVTLLRDWGCDYIQGRL 542

Query: 542 IGLASPDRPW 551
           IGLAS ++PW
Sbjct: 543 IGLASIEKPW 552


>ref|YP_001202740.1| putative diguanylate cyclase/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS 278]
 emb|CAL74497.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS 278]
          Length = 571

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/558 (75%), Positives = 488/558 (87%)

Query: 4   VPPAASILASLGQATFAWDLASDAIAWSDNVAAVFPDIPVAALASGAELAKLIEPSRSVR 63
           +P  + ILASLGQA F WDLASD I WSD+V AVF D+P+  L +G E AKLIEP R +R
Sbjct: 12  LPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEFAKLIEPDRGIR 71

Query: 64  SDALGAPAPVRSGEGVPYRIEYGVRAVTSAPVIWIEETGCWFAGADGRPARVQGVVRINN 123
           S+ +    P+    G PYRIEYGVR    AP+IW+EETGCW+AG+DGRP+R QG+VRINN
Sbjct: 72  SEVMRQAVPLHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRPSRAQGIVRINN 131

Query: 124 ERHARDEQLLKLSRHDPLTNELNRTHLIASLAETMEECARFRSSCAFMLIGIDHLARVND 183
           ERHAR+EQL+KLSRHDPLT ELNRT+L+A+LAE +EE  RFR +CAFML+GIDHLAR+ND
Sbjct: 132 ERHAREEQLVKLSRHDPLTGELNRTNLLATLAEVIEESQRFRFACAFMLVGIDHLARIND 191

Query: 184 AFGFDVADAVIAEVAKRIRARLRSGDMLGRFSGNKFGLILRNCTVDDTNVAAERFLAAVR 243
           AFGFDVAD V+ EVA+RIRARLR GD LGRFSGNKFGLIL++CT+DD  +AAERFLAAVR
Sbjct: 192 AFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMTIAAERFLAAVR 251

Query: 244 DEVVPTKSGPVSVTVSIGAVTLPRHARSAEEAVNRAQETLDAAKSRRAGSFALWKPNVER 303
           D+VVPTKSGPV+VT +IGAV++PRHARS EEAVNRA ETLD+AK RR GSF+ W+PNVER
Sbjct: 252 DDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNVER 311

Query: 304 DAQRRVNIRVTDEIVTALNERRIVIGFEPVVDARLRQPAFYECLVRMEQDDGRALLAPDI 363
           DAQR+VNIRVTDEIVTALNERRIV  FEPVV+A+ R  AFYECLVRM QDDGRALLAPD+
Sbjct: 312 DAQRKVNIRVTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQDDGRALLAPDV 371

Query: 364 VPVAERLGLIRLVDHRVLELAIAELAAAPGVQLSLNISPDTTMDPDWWATIESLMRAHPG 423
           VPVAERLGLIRLVDHR+LEL +AELAA+P V LSLNISP+TTMDPDWWA+IES+MRAHPG
Sbjct: 372 VPVAERLGLIRLVDHRILELVVAELAASPNVTLSLNISPETTMDPDWWASIESMMRAHPG 431

Query: 424 VGERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIVKI 483
           V ERLIVEITETV IQDIDD+RGFVTRLK+ GSRIAIDDFGAG+TSFRNLRKLGVDIVKI
Sbjct: 432 VAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRNLRKLGVDIVKI 491

Query: 484 DGAFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDEEAAVMLREWGCDFIQGRLIG 543
           DGAFVQN+VRSADDRAFVQTL++LARRL+IKTVAEWVQD+ +  +LR+WGCD+IQGR+IG
Sbjct: 492 DGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDWGCDYIQGRVIG 551

Query: 544 LASPDRPWNGQAEKPVPA 561
           LAS +RPW  Q    +PA
Sbjct: 552 LASVERPWIEQGRMELPA 569


>ref|NP_767591.1| hypothetical protein blr0951 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46216.1| blr0951 [Bradyrhizobium japonicum USDA 110]
          Length = 578

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/562 (77%), Positives = 487/562 (86%)

Query: 2   PPVPPAASILASLGQATFAWDLASDAIAWSDNVAAVFPDIPVAALASGAELAKLIEPSRS 61
           P +P A+ ILA+LGQA FAWD+ASD I W ++  AVFP IP   LA+GAE AKLIEP+ S
Sbjct: 17  PALPQASDILAALGQAVFAWDIASDVIVWGEHAGAVFPGIPAERLATGAEFAKLIEPAPS 76

Query: 62  VRSDALGAPAPVRSGEGVPYRIEYGVRAVTSAPVIWIEETGCWFAGADGRPARVQGVVRI 121
           +R+ AL   + V   +G PYR+EYGVR  TS PV+W+EETG WFAG DGRP R  G VRI
Sbjct: 77  LRTAALAQTSAVHGADGTPYRVEYGVRMSTSDPVVWVEETGRWFAGPDGRPVRAIGSVRI 136

Query: 122 NNERHARDEQLLKLSRHDPLTNELNRTHLIASLAETMEECARFRSSCAFMLIGIDHLARV 181
           NNERHARDE+L +L+R DPLT ELNR+HLIA+LAE +EE  RFRS+ AFML+GIDHLARV
Sbjct: 137 NNERHARDEELTRLARLDPLTGELNRSHLIAALAEAIEETTRFRSTSAFMLVGIDHLARV 196

Query: 182 NDAFGFDVADAVIAEVAKRIRARLRSGDMLGRFSGNKFGLILRNCTVDDTNVAAERFLAA 241
           NDAFGFDVADAVI +V KRIRARLR GD+LGRFSGNKFGLIL+NCT+DD NVAAERFLA 
Sbjct: 197 NDAFGFDVADAVILDVGKRIRARLRGGDVLGRFSGNKFGLILKNCTIDDMNVAAERFLAG 256

Query: 242 VRDEVVPTKSGPVSVTVSIGAVTLPRHARSAEEAVNRAQETLDAAKSRRAGSFALWKPNV 301
           +RDEVVPTKSGPVSVT SIGAV++PR+AR+ +EAVNRA ETLDAAK RRAGSFA W+P+ 
Sbjct: 257 IRDEVVPTKSGPVSVTASIGAVSVPRYARNTDEAVNRAHETLDAAKRRRAGSFAAWRPDA 316

Query: 302 ERDAQRRVNIRVTDEIVTALNERRIVIGFEPVVDARLRQPAFYECLVRMEQDDGRALLAP 361
            RDAQRRVNIRVTDEIVTALNERRI + +EPVV A  R+ AF+ECLVRM+Q DG+ LLAP
Sbjct: 317 TRDAQRRVNIRVTDEIVTALNERRIKLAYEPVVSAVSRERAFHECLVRMDQGDGQVLLAP 376

Query: 362 DIVPVAERLGLIRLVDHRVLELAIAELAAAPGVQLSLNISPDTTMDPDWWATIESLMRAH 421
           DIVPVAERLGLIRLVDHRVLEL +AELAAAP V LSLNISPDTTMDPDWWA IESLM AH
Sbjct: 377 DIVPVAERLGLIRLVDHRVLELVVAELAAAPDVSLSLNISPDTTMDPDWWAGIESLMLAH 436

Query: 422 PGVGERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIV 481
           PGV ERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIV
Sbjct: 437 PGVAERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIV 496

Query: 482 KIDGAFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDEEAAVMLREWGCDFIQGRL 541
           KIDGAFVQNI RSADDRAFVQTLIDLARRL+IKTVAEWVQD+EAA MLR+WGCD+IQGRL
Sbjct: 497 KIDGAFVQNITRSADDRAFVQTLIDLARRLDIKTVAEWVQDDEAANMLRDWGCDYIQGRL 556

Query: 542 IGLASPDRPWNGQAEKPVPATG 563
           IGLAS +RPW+   +  +PA G
Sbjct: 557 IGLASAERPWSAPPDSALPAAG 578


>ref|YP_530396.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gb|ABD86077.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 574

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/551 (78%), Positives = 489/551 (88%), Gaps = 4/551 (0%)

Query: 2   PPVPPAASILASLGQATFAWDLASDAIAWSDNVAAVFPDIPVAALASGAELAKLIEPSRS 61
           P  P  A ILA+LG A F WD+ASDA+AWS   AA+F D+P  ALASGA  A LIEP R+
Sbjct: 16  PGRPDEADILAALGHAAFVWDIASDAMAWSPAAAAIFRDLPAEALASGASFANLIEPVRA 75

Query: 62  VRSDAL-GAPAPVRSGEGVPYRIEYGVRAVTSAPVIWIEETGCWFAGADGRPARVQGVVR 120
           VRS+AL G+P       GV YRIEYGVRA T+APV WIEETGCWFA  DG+PARV+G+VR
Sbjct: 76  VRSEALLGSPG---GSHGVAYRIEYGVRASTAAPVCWIEETGCWFAAPDGKPARVEGIVR 132

Query: 121 INNERHARDEQLLKLSRHDPLTNELNRTHLIASLAETMEECARFRSSCAFMLIGIDHLAR 180
           +NNERHAR++QL+KL++HDPLT ELNR+HL+ASLAE ++E ++FRS+ AFMLIGIDHLAR
Sbjct: 133 VNNERHAREQQLVKLAQHDPLTGELNRSHLMASLAEAVDEASQFRSNFAFMLIGIDHLAR 192

Query: 181 VNDAFGFDVADAVIAEVAKRIRARLRSGDMLGRFSGNKFGLILRNCTVDDTNVAAERFLA 240
           VNDAFGFDVAD VI EVAKRIRARLR+GD+LGRFSGNKFGLIL+NCT+DD  VAAERFLA
Sbjct: 193 VNDAFGFDVADQVIGEVAKRIRARLRAGDLLGRFSGNKFGLILKNCTIDDMTVAAERFLA 252

Query: 241 AVRDEVVPTKSGPVSVTVSIGAVTLPRHARSAEEAVNRAQETLDAAKSRRAGSFALWKPN 300
            +RDEVVPTKSGPV+VT SIG V+ PR+AR A+EA+NRA E+LDAAKSRR GSF+LW+PN
Sbjct: 253 GIRDEVVPTKSGPVAVTASIGGVSAPRYARGADEALNRAHESLDAAKSRRRGSFSLWRPN 312

Query: 301 VERDAQRRVNIRVTDEIVTALNERRIVIGFEPVVDARLRQPAFYECLVRMEQDDGRALLA 360
           VERDAQRRVNIRVTDEIVTALNERRIV+ FEPVV A  R PAF+ECLVRM+QDDG  LLA
Sbjct: 313 VERDAQRRVNIRVTDEIVTALNERRIVMAFEPVVQAVSRAPAFHECLVRMKQDDGELLLA 372

Query: 361 PDIVPVAERLGLIRLVDHRVLELAIAELAAAPGVQLSLNISPDTTMDPDWWATIESLMRA 420
           PDIVPVAE+LGLIRLVDHRVLEL +AELAAAPGV+LSLNISPDTTMD DWWA+IESL+ A
Sbjct: 373 PDIVPVAEKLGLIRLVDHRVLELVVAELAAAPGVELSLNISPDTTMDADWWASIESLLGA 432

Query: 421 HPGVGERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDI 480
           +PGV ERLIVEITETVAIQD+DDVRGFV RLKNFG+RIAIDDFGAGYTSFRNLR LGVDI
Sbjct: 433 NPGVAERLIVEITETVAIQDLDDVRGFVNRLKNFGARIAIDDFGAGYTSFRNLRNLGVDI 492

Query: 481 VKIDGAFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDEEAAVMLREWGCDFIQGR 540
           VKIDGAFVQNI RSADDRAFVQTLIDLARRLEIKTVAEWVQDE +A+MLR+WGCD+IQGR
Sbjct: 493 VKIDGAFVQNIARSADDRAFVQTLIDLARRLEIKTVAEWVQDEASAIMLRDWGCDYIQGR 552

Query: 541 LIGLASPDRPW 551
           LIGLAS +RPW
Sbjct: 553 LIGLASAERPW 563


>ref|NP_945882.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 emb|CAE25973.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 580

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/546 (76%), Positives = 473/546 (86%)

Query: 6   PAASILASLGQATFAWDLASDAIAWSDNVAAVFPDIPVAALASGAELAKLIEPSRSVRSD 65
           P + +L+ LGQA F WDLASD ++W+   A +F DIP   LA+GA  A L+EPSR VRSD
Sbjct: 19  PDSLLLSLLGQAAFVWDLASDTLSWTGRAAELFQDIPAETLATGASFAALLEPSRHVRSD 78

Query: 66  ALGAPAPVRSGEGVPYRIEYGVRAVTSAPVIWIEETGCWFAGADGRPARVQGVVRINNER 125
           AL   A       VPYRIEYG+RA T+APV WIEETG WFAG DGRPARV+G+VRINNER
Sbjct: 79  ALLNGAATAGPGCVPYRIEYGIRASTAAPVSWIEETGVWFAGPDGRPARVEGIVRINNER 138

Query: 126 HARDEQLLKLSRHDPLTNELNRTHLIASLAETMEECARFRSSCAFMLIGIDHLARVNDAF 185
           HARDEQLLKLS+HDPLT ELNRTHLI +LAE +EE  RFR+S +FML+G+DHLARVND+F
Sbjct: 139 HARDEQLLKLSQHDPLTGELNRTHLIGALAEAIEEATRFRTSLSFMLVGLDHLARVNDSF 198

Query: 186 GFDVADAVIAEVAKRIRARLRSGDMLGRFSGNKFGLILRNCTVDDTNVAAERFLAAVRDE 245
           GFDVAD VI+ +A RIR RLR+GD LGRFSGNKFGL+L+NCTVDD ++AAERFLAAVRDE
Sbjct: 199 GFDVADEVISTIAGRIRNRLRAGDQLGRFSGNKFGLVLKNCTVDDAHIAAERFLAAVRDE 258

Query: 246 VVPTKSGPVSVTVSIGAVTLPRHARSAEEAVNRAQETLDAAKSRRAGSFALWKPNVERDA 305
           +VPTKSGPVS+T SIGAV+ PRHAR+A+EA+NRAQE L AAK RR+GSFA+W+PNVERD 
Sbjct: 259 IVPTKSGPVSLTASIGAVSAPRHARTADEAINRAQEALAAAKHRRSGSFAMWRPNVERDT 318

Query: 306 QRRVNIRVTDEIVTALNERRIVIGFEPVVDARLRQPAFYECLVRMEQDDGRALLAPDIVP 365
           QRRVNIRVTDEIVTALNERRIV+ +EPVVDA  R PAF+ECLVRM+ DDG+ L APDIVP
Sbjct: 319 QRRVNIRVTDEIVTALNERRIVLAYEPVVDASSRAPAFHECLVRMKTDDGQVLFAPDIVP 378

Query: 366 VAERLGLIRLVDHRVLELAIAELAAAPGVQLSLNISPDTTMDPDWWATIESLMRAHPGVG 425
           VAERLGLIRLVDHRVLEL +AELAAAPGV LSLNISPDTT+D DWWA IESLM AHPG+ 
Sbjct: 379 VAERLGLIRLVDHRVLELVVAELAAAPGVTLSLNISPDTTIDADWWAGIESLMLAHPGIA 438

Query: 426 ERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFRNLRKLGVDIVKIDG 485
           ERLIVEITETVAI D+D+VRGFV RLK  G++IAIDDFGAGYTSFRNLR LGVDIVKIDG
Sbjct: 439 ERLIVEITETVAIPDLDEVRGFVNRLKTLGAKIAIDDFGAGYTSFRNLRALGVDIVKIDG 498

Query: 486 AFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDEEAAVMLREWGCDFIQGRLIGLA 545
           AFVQNI RSADDRAFVQTLIDLARRL IKTVAEWVQD+E+A +LR+WGCD+IQGRLIGLA
Sbjct: 499 AFVQNIARSADDRAFVQTLIDLARRLGIKTVAEWVQDDESAQLLRDWGCDYIQGRLIGLA 558

Query: 546 SPDRPW 551
           S  RPW
Sbjct: 559 SQQRPW 564