BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0208.0015.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004304071.1| transcriptional regulator, AraC family with ... 754 0.0 ref|ZP_08506164.1| hypothetical protein METUNv1_03248 [Methylove... 716 0.0 ref|YP_001022788.1| hypothetical protein Mpe_A3600 [Methylibium ... 659 0.0 ref|YP_001753191.1| acetamidase/formamidase [Methylobacterium ra... 653 0.0 ref|YP_001923464.1| acetamidase/formamidase [Methylobacterium po... 649 0.0 >ref|YP_004304071.1| transcriptional regulator, AraC family with acetamidase/formamidase activity [Polymorphum gilvum SL003B-26A1] gb|ADZ70769.1| Transcriptional regulator, AraC family with acetamidase/formamidase activity [Polymorphum gilvum SL003B-26A1] Length = 481 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/423 (83%), Positives = 386/423 (91%) Query: 1 VRLVDQPAQRAYHHLPANADTVHWGYFSKSLKPRVEINSGDFITIEALTHHANDDAERMV 60 V QPAQRA+H+LPA +TVHWGYFSK+LKP++EINSGD +TIEALTHHA DD ERMV Sbjct: 57 VSAAHQPAQRAFHYLPATDETVHWGYFSKTLKPKIEINSGDLVTIEALTHHAADDMERMV 116 Query: 61 KGDPGVESVYLWTKEKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVFVRGAEEGDVL 120 KGDPG ESVYLWTK++KGVNRRGAGP DASLFGRGAGEGLGVHICTGPV+VRGAE GDVL Sbjct: 117 KGDPGAESVYLWTKDRKGVNRRGAGPEDASLFGRGAGEGLGVHICTGPVYVRGAEPGDVL 176 Query: 121 ELRIIDVAPRPCANPKYSGKAFGSNAAASWGFHYKDLLTEPKPREVVTIYEVDATGERNW 180 E+RI+DV PRPCANP ++GKAFGSNAAA WGFHYKDL+TEPK REV+TIYE+DATGERNW Sbjct: 177 EVRILDVVPRPCANPAFAGKAFGSNAAAWWGFHYKDLITEPKTREVITIYEIDATGERNW 236 Query: 181 ARAVYNFTWTPQTDPSGVVHKTIDYPGVPVDHSTVKENHGILKNVRIPVRPHFGVIGLAP 240 A+AVYNF WTPQTDP GVVH TIDYPGVPVDHSTV ENH +LK +R+PVRPHFGVIGLAP Sbjct: 237 AQAVYNFRWTPQTDPFGVVHPTIDYPGVPVDHSTVVENHDVLKGIRVPVRPHFGVIGLAP 296 Query: 241 KEAEFVDSIPPSYTGGNIDNWRIGKGATMYYPVAVEGGLLSVGDSHASQGDSELCGTAIE 300 KEA+ VDSIPPSYTGGNIDNWRIGKGATMYYPVAV+G LLSVGD HASQGDSELCGTAIE Sbjct: 297 KEADMVDSIPPSYTGGNIDNWRIGKGATMYYPVAVDGALLSVGDPHASQGDSELCGTAIE 356 Query: 301 CSLNGTFQIILHKKADLAGTALEALDYPMLETQDEWLVHGFSYANYLSELGAGAQTEIYK 360 CSL GTFQIILHKKADL GTALE L++PMLETQ+EWLVHGFSYANYL ELG AQ+ IY Sbjct: 357 CSLTGTFQIILHKKADLPGTALEGLEHPMLETQNEWLVHGFSYANYLEELGGDAQSAIYD 416 Query: 361 KSSVDLALRDAFRKMRKFLMTTKKLTEDEAISLISLGVDFGVTQVVDGNWGVHAVIRKDI 420 KSSVDLALRDAFRKMR FLMTT+ LTEDEAISLI++ DFG+TQVVDGNWGVHA+IRKDI Sbjct: 417 KSSVDLALRDAFRKMRHFLMTTQGLTEDEAISLITVSADFGITQVVDGNWGVHAIIRKDI 476 Query: 421 FAG 423 FAG Sbjct: 477 FAG 479 >ref|ZP_08506164.1| hypothetical protein METUNv1_03248 [Methyloversatilis universalis FAM5] gb|EGK70343.1| hypothetical protein METUNv1_03248 [Methyloversatilis universalis FAM5] Length = 494 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/424 (79%), Positives = 381/424 (89%), Gaps = 1/424 (0%) Query: 2 RLVDQPAQ-RAYHHLPANADTVHWGYFSKSLKPRVEINSGDFITIEALTHHANDDAERMV 60 R D Q R+++ +PA+ADTVHWGYFSKSLKP+VEI+SGDF+TIE LTHHA DD +RM+ Sbjct: 69 RAADGTMQTRSHYFIPASADTVHWGYFSKSLKPQVEISSGDFVTIETLTHHAGDDYDRMI 128 Query: 61 KGDPGVESVYLWTKEKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVFVRGAEEGDVL 120 KGDPG ESV+ W K+KKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPV+V+GAEEGDVL Sbjct: 129 KGDPGAESVFHWDKKKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVYVKGAEEGDVL 188 Query: 121 ELRIIDVAPRPCANPKYSGKAFGSNAAASWGFHYKDLLTEPKPREVVTIYEVDATGERNW 180 E+RI+DVAPRP ANP Y GK+FG NAAA WGFHYKDL+TEPK REV+TIYE+DA +RNW Sbjct: 189 EVRIVDVAPRPSANPAYKGKSFGVNAAAWWGFHYKDLITEPKNREVITIYEIDAGLDRNW 248 Query: 181 ARAVYNFTWTPQTDPSGVVHKTIDYPGVPVDHSTVKENHGILKNVRIPVRPHFGVIGLAP 240 A+AVYNF WTPQTDP GVVHKTIDYPGV VDH+TVKENHG+LKNVR+PVRPHFGV G+AP Sbjct: 249 AQAVYNFQWTPQTDPFGVVHKTIDYPGVIVDHATVKENHGVLKNVRVPVRPHFGVAGVAP 308 Query: 241 KEAEFVDSIPPSYTGGNIDNWRIGKGATMYYPVAVEGGLLSVGDSHASQGDSELCGTAIE 300 KEA+ VDSIPPSYTGGNIDNWRIGKGATMYYPVAV+G L SVGD HA QGDSELCGTAIE Sbjct: 309 KEADMVDSIPPSYTGGNIDNWRIGKGATMYYPVAVKGALFSVGDPHAGQGDSELCGTAIE 368 Query: 301 CSLNGTFQIILHKKADLAGTALEALDYPMLETQDEWLVHGFSYANYLSELGAGAQTEIYK 360 CSL GTFQ ILHKKADLAGT L+ L+YP+LETQDEW++HGFS+ANYL+ELG AQ++IY Sbjct: 369 CSLTGTFQFILHKKADLAGTPLDKLEYPLLETQDEWVIHGFSFANYLAELGDKAQSDIYA 428 Query: 361 KSSVDLALRDAFRKMRKFLMTTKKLTEDEAISLISLGVDFGVTQVVDGNWGVHAVIRKDI 420 KSSVDLALRDAFRK R FLM T+ L+EDEAISL+S+GVDF VTQVVDGNWGVHAVIRK + Sbjct: 429 KSSVDLALRDAFRKSRTFLMDTQGLSEDEAISLLSVGVDFAVTQVVDGNWGVHAVIRKAL 488 Query: 421 FAGG 424 F+GG Sbjct: 489 FSGG 492 >ref|YP_001022788.1| hypothetical protein Mpe_A3600 [Methylibium petroleiphilum PM1] gb|ABM96553.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 485 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/411 (75%), Positives = 352/411 (85%), Gaps = 3/411 (0%) Query: 11 AYHHLPANADTVHWGYFSKSLKPRVEINSGDFITIEALTHHANDDAERMVKGDPGVESVY 70 +++++PA+A TV WGYFSKS KP VE+ SGDF+TIE LTHHANDDAERM+KGDPG ESV+ Sbjct: 73 SHYYIPASAGTVLWGYFSKSAKPVVEVESGDFVTIETLTHHANDDAERMIKGDPGAESVF 132 Query: 71 LWTKEKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVFVRGAEEGDVLELRIIDVAPR 130 W +KKGVNRRGAG MDA + GAG G GVHICTGPV ++GAE GD+LE+RI+DVA R Sbjct: 133 HWDAKKKGVNRRGAGAMDAKV---GAGGGEGVHICTGPVRIKGAEPGDILEVRIVDVATR 189 Query: 131 PCANPKYSGKAFGSNAAASWGFHYKDLLTEPKPREVVTIYEVDATGERNWARAVYNFTWT 190 P ANP Y G+AFGSNAAA WGFHY D +TEPK REV+TIYEVDATGERNWARAVYNF WT Sbjct: 190 PSANPAYKGRAFGSNAAAWWGFHYGDTITEPKKREVITIYEVDATGERNWARAVYNFKWT 249 Query: 191 PQTDPSGVVHKTIDYPGVPVDHSTVKENHGILKNVRIPVRPHFGVIGLAPKEAEFVDSIP 250 PQTDP GVVH TIDYPGVPVDH T+ +N +LKN+RIPVRPHFG +G+AP EAE V+SIP Sbjct: 250 PQTDPFGVVHPTIDYPGVPVDHRTITKNENVLKNIRIPVRPHFGTMGVAPVEAEMVNSIP 309 Query: 251 PSYTGGNIDNWRIGKGATMYYPVAVEGGLLSVGDSHASQGDSELCGTAIECSLNGTFQII 310 P+YTGGNIDNWRIGKGAT+YYPVAV G + SVGD HASQGDSELCGTAIECSL GTFQ+I Sbjct: 310 PNYTGGNIDNWRIGKGATVYYPVAVPGAMFSVGDPHASQGDSELCGTAIECSLTGTFQLI 369 Query: 311 LHKKADLAGTALEALDYPMLETQDEWLVHGFSYANYLSELGAGAQTEIYKKSSVDLALRD 370 LHKKA L GT L L YP+LETQDEWL+HGFSYANYL+ELG AQ +IY KSSVD ALRD Sbjct: 370 LHKKASLPGTPLAELKYPLLETQDEWLLHGFSYANYLAELGPNAQNDIYSKSSVDKALRD 429 Query: 371 AFRKMRKFLMTTKKLTEDEAISLISLGVDFGVTQVVDGNWGVHAVIRKDIF 421 A+ KMR FLMTT+ L EDEAISL+S+ VDFG+TQVVDGNWGVHAV++K IF Sbjct: 430 AYHKMRHFLMTTQGLGEDEAISLMSIAVDFGITQVVDGNWGVHAVVKKSIF 480 >ref|YP_001753191.1| acetamidase/formamidase [Methylobacterium radiotolerans JCM 2831] gb|ACB22508.1| Acetamidase/Formamidase [Methylobacterium radiotolerans JCM 2831] Length = 481 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/415 (73%), Positives = 357/415 (86%), Gaps = 3/415 (0%) Query: 8 AQRAYHHLPANADTVHWGYFSKSLKPRVEINSGDFITIEALTHHANDDAERMVKGDPGVE 67 A A++HLPANA+TVHWG+FS+SLKP+VEI SGDF+TIE LTH A+DDAERM++GDPG E Sbjct: 66 AATAHYHLPANAETVHWGFFSRSLKPKVEIGSGDFVTIETLTHQASDDAERMIQGDPGAE 125 Query: 68 SVYLWTKEKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVFVRGAEEGDVLELRIIDV 127 SVYLWTK+K GV+ RGAG MDA + G G GLGVHICTGPV +RGAE GDVLE+RI+DV Sbjct: 126 SVYLWTKDKMGVSPRGAGAMDAKI---GPGGGLGVHICTGPVAIRGAEPGDVLEVRILDV 182 Query: 128 APRPCANPKYSGKAFGSNAAASWGFHYKDLLTEPKPREVVTIYEVDATGERNWARAVYNF 187 APRPCANPKY G AFGSNAAA WG+HY DL+T KPREVVTIYEVDATGER+WARAVY+F Sbjct: 183 APRPCANPKYKGLAFGSNAAAWWGYHYNDLITGDKPREVVTIYEVDATGERDWARAVYSF 242 Query: 188 TWTPQTDPSGVVHKTIDYPGVPVDHSTVKENHGILKNVRIPVRPHFGVIGLAPKEAEFVD 247 W TDP GV H TIDYPG+PVDHS ++ +LK +R+P+RPHFG +G+AP EA+ V+ Sbjct: 243 RWPGVTDPFGVSHPTIDYPGLPVDHSKTQKTFEVLKGIRVPIRPHFGTMGVAPAEADRVN 302 Query: 248 SIPPSYTGGNIDNWRIGKGATMYYPVAVEGGLLSVGDSHASQGDSELCGTAIECSLNGTF 307 +IPPSYTGGNIDNWRIGKGAT+YYPVAV G L SVGD HASQGDSELCGTAIECSL GTF Sbjct: 303 TIPPSYTGGNIDNWRIGKGATLYYPVAVPGALFSVGDPHASQGDSELCGTAIECSLTGTF 362 Query: 308 QIILHKKADLAGTALEALDYPMLETQDEWLVHGFSYANYLSELGAGAQTEIYKKSSVDLA 367 Q ILHKKADL GT LEALD+PM+ET+D+W++ GFSY NYL +LG AQ+ I++KSS+DLA Sbjct: 363 QFILHKKADLPGTPLEALDFPMIETRDDWVLSGFSYPNYLRDLGPDAQSAIFQKSSIDLA 422 Query: 368 LRDAFRKMRKFLMTTKKLTEDEAISLISLGVDFGVTQVVDGNWGVHAVIRKDIFA 422 +RDAFRKMR+FLM K LTEDEAISL+S+ VDFG+TQVVDGNWGVHAV+RK IF+ Sbjct: 423 MRDAFRKMRQFLMHAKGLTEDEAISLMSVAVDFGITQVVDGNWGVHAVVRKAIFS 477 >ref|YP_001923464.1| acetamidase/formamidase [Methylobacterium populi BJ001] gb|ACB78929.1| Acetamidase/Formamidase [Methylobacterium populi BJ001] Length = 479 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/414 (73%), Positives = 355/414 (85%), Gaps = 4/414 (0%) Query: 9 QRAYHHLPANADTVHWGYFSKSLKPRVEINSGDFITIEALTHHANDDAERMVKGDPGVES 68 Q A++HLPANA+T+HWGYFSKSLKP+VEI+SGDF+TIE LTHHANDDAERMV GDPG ES Sbjct: 66 QTAHYHLPANAETIHWGYFSKSLKPQVEIDSGDFVTIETLTHHANDDAERMVTGDPGAES 125 Query: 69 VYLWTKEKKGVNRRGAGPMDASLFGRGAGEGLGVHICTGPVFVRGAEEGDVLELRIIDVA 128 V+LWTKEKKGV RRGAGP D+ L G G GLGVHICTGPV +RGAE GDVLE+RI+DVA Sbjct: 126 VFLWTKEKKGVARRGAGPEDSKL---GPGGGLGVHICTGPVAIRGAEPGDVLEVRILDVA 182 Query: 129 PRPCANPKYSGKAFGSNAAASWGFHYKDLLTEPKPREVVTIYEVDATGERNWARAVYNFT 188 PRP ANPK+ G FGSNAAA WG+HY D+L E + REVVTIYEVDA+G+R+WA+AVY+F Sbjct: 183 PRPSANPKFKGLTFGSNAAAWWGYHYNDML-EGRKREVVTIYEVDASGDRDWAKAVYSFP 241 Query: 189 WTPQTDPSGVVHKTIDYPGVPVDHSTVKENHGILKNVRIPVRPHFGVIGLAPKEAEFVDS 248 W TDP G H TIDYPG+PVDH+ K + +LK +R+P+RPHFG +GLAP EA+ V+S Sbjct: 242 WPGVTDPDGRDHPTIDYPGLPVDHTKTKRTYDVLKGIRVPIRPHFGTMGLAPAEADMVNS 301 Query: 249 IPPSYTGGNIDNWRIGKGATMYYPVAVEGGLLSVGDSHASQGDSELCGTAIECSLNGTFQ 308 IPPSYTGGNIDNWRIGKGATMYYPVAV G L SVGD HASQGDSELCGTAIECSL GTFQ Sbjct: 302 IPPSYTGGNIDNWRIGKGATMYYPVAVPGALFSVGDPHASQGDSELCGTAIECSLTGTFQ 361 Query: 309 IILHKKADLAGTALEALDYPMLETQDEWLVHGFSYANYLSELGAGAQTEIYKKSSVDLAL 368 ILHKKADLAGT+LEALD+PM+ET ++W++ GFSY NYL +LG AQ I++KSS+DLA+ Sbjct: 362 FILHKKADLAGTSLEALDFPMIETSEDWVLSGFSYPNYLKDLGPDAQNAIFQKSSIDLAM 421 Query: 369 RDAFRKMRKFLMTTKKLTEDEAISLISLGVDFGVTQVVDGNWGVHAVIRKDIFA 422 RDAFRKMR+FLM K LTEDEAISL+S+ VDFG+TQVVDGNWGVHA+++K IF+ Sbjct: 422 RDAFRKMRQFLMHAKGLTEDEAISLMSVAVDFGITQVVDGNWGVHAIVKKAIFS 475