BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0208.0011.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774372.1| hypothetical protein blr7732 [Bradyrhizobium ja... 501 e-140 emb|CBA31502.1| Protein bugT [Curvibacter putative symbiont of H... 289 4e-76 ref|YP_004390342.1| hypothetical protein Alide2_4523 [Alicycliph... 286 2e-75 ref|YP_004128771.1| hypothetical protein Alide_4182 [Alicycliphi... 286 3e-75 ref|YP_003978237.1| extra-cytoplasmic solute receptor family pro... 284 1e-74 >ref|NP_774372.1| hypothetical protein blr7732 [Bradyrhizobium japonicum USDA 110] dbj|BAC52997.1| blr7732 [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/310 (80%), Positives = 272/310 (87%) Query: 13 LLLAPVTASAQDFPTKPVRLIVPFPPGGPNDIIARVIGQKISELARQPVIVDNRAGQGGV 72 LLL P ASAQ+FP KP++LIVPFP GGPNDIIARVIGQ++SEL+ QPV++DNR GQGGV Sbjct: 12 LLLFPALASAQNFPAKPIKLIVPFPAGGPNDIIARVIGQRMSELSGQPVLIDNRGGQGGV 71 Query: 73 LGTDAVAKAAPDGYTVAIASAGALAISPSMEKVAYDTLQDLAPVTLVATVPEMLVVAANV 132 LGTDAV+KAAPDGYT+AI+SAGALAISPSME+VAYD L DL PVTLVATVPEMLVVA NV Sbjct: 72 LGTDAVSKAAPDGYTIAISSAGALAISPSMERVAYDALSDLTPVTLVATVPEMLVVATNV 131 Query: 133 PAKNMNELVALAKAQPGKLNFASSGPGSLPHLACELFKLTAKVDIVHVPYRGAAPAVNDL 192 PAK++ EL+ALAKAQPGKLNFASSGPGSLPHLA ELFKLTAK+DIVHVPYRGAAPAVNDL Sbjct: 132 PAKDIGELIALAKAQPGKLNFASSGPGSLPHLAGELFKLTAKIDIVHVPYRGAAPAVNDL 191 Query: 193 LGQQVQMTFLDLPVILPQIKAGALRPIALGGRERAPTAPDVPTTAETGMPDLIIENWYGM 252 LGQQVQMTFLDLPV+LPQ+KAGALRPIA+G ERAPTAP VPTTAE G PDL IENWYGM Sbjct: 192 LGQQVQMTFLDLPVLLPQVKAGALRPIAVGSVERAPTAPKVPTTAEAGFPDLRIENWYGM 251 Query: 253 VAPAGTPPAIVARLNQLTTAAMADPMVKQKLAEQGLTLAGDTPEHFRDFIAADIRKWAKV 312 VAP GTP IVA L+ L AMADP VK+KLA QG TL GD PEHFR FIA + +KW KV Sbjct: 252 VAPKGTPKEIVAALHGLAIKAMADPAVKEKLAAQGATLVGDEPEHFRQFIADETKKWTKV 311 Query: 313 IQDAGVVTTK 322 I+DAGV T K Sbjct: 312 IKDAGVETAK 321 >emb|CBA31502.1| Protein bugT [Curvibacter putative symbiont of Hydra magnipapillata] Length = 359 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 153/321 (47%), Positives = 204/321 (63%), Gaps = 3/321 (0%) Query: 1 MTMCGRLLAA--LLLLLAPVTASAQDFPTKPVRLIVPFPPGGPNDIIARVIGQKISELAR 58 + C L A L L + V +A +P KP+RL+VPF PGG DI+AR IGQK++E Sbjct: 36 IATCAVLTGASGLFLSQSAVAQTAGTYPAKPIRLVVPFTPGGSTDILARAIGQKLNEAWG 95 Query: 59 QPVIVDNRAGQGGVLGTDAVAKAAPDGYTVAIASAGALAISPSME-KVAYDTLQDLAPVT 117 QPV++DN G GG +G D VAKA DGYT+ + G LA++PS+ + YD ++ APV Sbjct: 96 QPVVIDNVPGAGGSIGADRVAKAPADGYTLLMGHIGTLAVNPSLYPNLPYDPIKSFAPVA 155 Query: 118 LVATVPEMLVVAANVPAKNMNELVALAKAQPGKLNFASSGPGSLPHLACELFKLTAKVDI 177 VA VP +LVV +VPAK++ ELVALAKA+PG+LN+ S G GS +LA E FKL + Sbjct: 156 WVARVPNVLVVHPSVPAKSVKELVALAKAKPGQLNYGSGGNGSAANLATEYFKLQTGSSL 215 Query: 178 VHVPYRGAAPAVNDLLGQQVQMTFLDLPVILPQIKAGALRPIALGGRERAPTAPDVPTTA 237 +H+PYRG APAV DL+G Q+Q+ F P ++ QIKAG LR +A+ +R PD+PT A Sbjct: 216 LHIPYRGTAPAVTDLVGGQIQVLFTGAPAVINQIKAGQLRALAVSSPKRLDALPDLPTVA 275 Query: 238 ETGMPDLIIENWYGMVAPAGTPPAIVARLNQLTTAAMADPMVKQKLAEQGLTLAGDTPEH 297 ETG D + WYG+VAPAGTP +VA+LN A+ P +K +L +G DTP + Sbjct: 276 ETGYKDFEADQWYGVVAPAGTPADVVAKLNNQINLALNSPELKTRLNTEGAIATPDTPAN 335 Query: 298 FRDFIAADIRKWAKVIQDAGV 318 F IAA+I +W VI V Sbjct: 336 FGKLIAAEIARWKPVISGGRV 356 >ref|YP_004390342.1| hypothetical protein Alide2_4523 [Alicycliphilus denitrificans K601] gb|AEB86826.1| hypothetical protein Alide2_4523 [Alicycliphilus denitrificans K601] Length = 323 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/297 (46%), Positives = 203/297 (68%), Gaps = 1/297 (0%) Query: 23 QDFPTKPVRLIVPFPPGGPNDIIARVIGQKISELARQPVIVDNRAGQGGVLGTDAVAKAA 82 Q +P KPVR+IVP+P GG DIIAR+ +++E RQP +V+NRAG G +G AVA++A Sbjct: 24 QSYPAKPVRIIVPYPAGGTTDIIARIAAAQLAERLRQPFVVENRAGASGAIGAVAVAQSA 83 Query: 83 PDGYTVAIASAGALAISPSMEK-VAYDTLQDLAPVTLVATVPEMLVVAANVPAKNMNELV 141 PDGYT+ + +A + I+ +++K + YD ++D APVT+VA+ P ++VV +VPAK + EL+ Sbjct: 84 PDGYTLVMGTASSHGINSALQKNLPYDAVKDFAPVTVVASTPNIVVVHPSVPAKTLGELL 143 Query: 142 ALAKAQPGKLNFASSGPGSLPHLACELFKLTAKVDIVHVPYRGAAPAVNDLLGQQVQMTF 201 ALAKAQPGK+NF S+ PG PH++ EL K+ A VD+ HVPY+GAAP + DL+G Q+Q F Sbjct: 144 ALAKAQPGKINFGSTSPGGSPHMSAELLKMMAGVDMAHVPYKGAAPMLTDLIGGQIQAGF 203 Query: 202 LDLPVILPQIKAGALRPIALGGRERAPTAPDVPTTAETGMPDLIIENWYGMVAPAGTPPA 261 +LP + ++ G +R +A+ +R P APD+PT AE+G+P + W+G++APAGTP + Sbjct: 204 DNLPSTIGFVRGGKVRALAVTTPQRWPGAPDIPTVAESGVPGYEVSGWFGLLAPAGTPKS 263 Query: 262 IVARLNQLTTAAMADPMVKQKLAEQGLTLAGDTPEHFRDFIAADIRKWAKVIQDAGV 318 ++ L A+ P V ++L + G + PE F IAAD+ KW KV+Q GV Sbjct: 264 VLDTLQSAVAQAVQQPEVARQLRDLGAEPVANKPEAFARDIAADVEKWRKVVQATGV 320 >ref|YP_004128771.1| hypothetical protein Alide_4182 [Alicycliphilus denitrificans BC] gb|ADV01884.1| conserved hypothetical protein [Alicycliphilus denitrificans BC] Length = 323 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/297 (46%), Positives = 203/297 (68%), Gaps = 1/297 (0%) Query: 23 QDFPTKPVRLIVPFPPGGPNDIIARVIGQKISELARQPVIVDNRAGQGGVLGTDAVAKAA 82 Q +P KPVR+IVP+P GG DIIAR+ +++E RQP +V+NRAG G +G AVA++A Sbjct: 24 QSYPAKPVRIIVPYPAGGTTDIIARIAAAQLAERLRQPFVVENRAGASGAIGAVAVAQSA 83 Query: 83 PDGYTVAIASAGALAISPSMEK-VAYDTLQDLAPVTLVATVPEMLVVAANVPAKNMNELV 141 PDGYT+ + +A + I+ +++K + YD ++D APVT+VA+ P ++VV +VPAK + EL+ Sbjct: 84 PDGYTLVMGTASSHGINSALQKNLPYDAVKDFAPVTVVASTPNIVVVHPSVPAKTLGELL 143 Query: 142 ALAKAQPGKLNFASSGPGSLPHLACELFKLTAKVDIVHVPYRGAAPAVNDLLGQQVQMTF 201 ALAKAQPGK+NF S+ PG PH++ EL K+ A VD+ HVPY+GAAP + DL+G Q+Q F Sbjct: 144 ALAKAQPGKINFGSTSPGGSPHMSAELLKMMAGVDMAHVPYKGAAPMLTDLIGGQIQAGF 203 Query: 202 LDLPVILPQIKAGALRPIALGGRERAPTAPDVPTTAETGMPDLIIENWYGMVAPAGTPPA 261 +LP + ++ G +R +A+ +R P APD+PT AE+G+P + W+G++APAGTP + Sbjct: 204 DNLPSTIGFVRGGKVRALAVTTPQRWPGAPDIPTVAESGVPGYEVSGWFGLLAPAGTPKS 263 Query: 262 IVARLNQLTTAAMADPMVKQKLAEQGLTLAGDTPEHFRDFIAADIRKWAKVIQDAGV 318 ++ L A+ P V ++L + G + PE F IAAD+ KW KV+Q GV Sbjct: 264 VLDTLQSAVALAVQQPEVARQLRDLGAEPVANKPEAFARDIAADVEKWRKVVQATGV 320 >ref|YP_003978237.1| extra-cytoplasmic solute receptor family protein 40 [Achromobacter xylosoxidans A8] gb|ADP15522.1| extra-cytoplasmic solute receptor family protein 40 [Achromobacter xylosoxidans A8] Length = 341 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/321 (47%), Positives = 207/321 (64%), Gaps = 6/321 (1%) Query: 6 RLLAAL--LLLLAPVTA---SAQDFPTKPVRLIVPFPPGGPNDIIARVIGQKISELARQP 60 R+LA L +LL TA +AQ FP KPV + VPF GG DI+ARVIGQ++SE Sbjct: 20 RILALLGCAVLLGAGTAGAQTAQGFPNKPVTINVPFSAGGTTDILARVIGQRLSERWGVS 79 Query: 61 VIVDNRAGQGGVLGTDAVAKAAPDGYTVAIASAGALAISPSMEK-VAYDTLQDLAPVTLV 119 V+V+N+ G GG +GT VA+AAPDGYT+ + + G AI+PS+ K + YD ++D AP+T Sbjct: 80 VVVENKPGAGGNIGTAQVARAAPDGYTLVMGTIGTHAINPSLYKSMPYDAIKDFAPITRT 139 Query: 120 ATVPEMLVVAANVPAKNMNELVALAKAQPGKLNFASSGPGSLPHLACELFKLTAKVDIVH 179 A VP LVV N P + EL+A K PGKL F SSG GS H++ E FK+ VD+VH Sbjct: 140 AMVPNALVVPKNAPYDTVKELIAYGKTHPGKLTFGSSGHGSTLHMSGETFKMMTGVDMVH 199 Query: 180 VPYRGAAPAVNDLLGQQVQMTFLDLPVILPQIKAGALRPIALGGRERAPTAPDVPTTAET 239 VPY+G+ PAV DLLG Q+ M F +LP LP IKAG L+ +A+ +R+ PDVPT AE Sbjct: 200 VPYKGSTPAVTDLLGGQISMIFDNLPSALPHIKAGRLKVLAVTSAQRSDQLPDVPTVAEA 259 Query: 240 GMPDLIIENWYGMVAPAGTPPAIVARLNQLTTAAMADPMVKQKLAEQGLTLAGDTPEHFR 299 G+P + +W+G+ APA TP +VA +N+ A + P +++++ +QG DTP F Sbjct: 260 GVPGYEVVSWFGLWAPARTPDGVVAEINKQVVAIIQTPDMQKQIRDQGAVPNPDTPAEFA 319 Query: 300 DFIAADIRKWAKVIQDAGVVT 320 FI ++ RKWA+V++ A V T Sbjct: 320 AFIGSEGRKWAEVVRRANVTT 340