BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0208.0009.p         (202 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774373.1| transcriptional regulator [Bradyrhizobium japon...   210   1e-52
ref|YP_001237526.1| LysR family transcriptional regulator [Brady...   202   2e-50
ref|YP_001208077.1| LysR family transcriptional regulator [Brady...   191   4e-47
ref|YP_530668.1| LysR family transcriptional regulator [Rhodopse...   184   8e-45
ref|ZP_08627364.1| hydrogen peroxide response regulator [Bradyrh...   175   4e-42

>ref|NP_774373.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52998.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 296

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 120/133 (90%)

Query: 1   MRFDLTDLQLFIAVSDARSITQGAARANLALASASERIKGLEEALGVALLKRGRRGVELT 60
           MRFDL DLQLFIAV+D RSIT+GA R+NLALASAS RIKGLE+ALGVALLKRGRRGVELT
Sbjct: 1   MRFDLVDLQLFIAVADQRSITRGAERSNLALASASARIKGLEDALGVALLKRGRRGVELT 60

Query: 61  AAGESLLGHARIVIHNVEALQSDLAAYASGVRANVLLLANTSGLSEHLPRALAAFLHEHP 120
           AAGESLL HAR+VIH ++A++ DLA +ASGVRA+V  LANTSGLSEHLP+ALA FL EH 
Sbjct: 61  AAGESLLDHARLVIHQIDAMRGDLAGFASGVRASVHFLANTSGLSEHLPKALAGFLREHR 120

Query: 121 DISVDVEERESTD 133
           D+++D+EERESTD
Sbjct: 121 DVAIDIEERESTD 133


>ref|YP_001237526.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ33620.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 296

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 123/140 (87%)

Query: 1   MRFDLTDLQLFIAVSDARSITQGAARANLALASASERIKGLEEALGVALLKRGRRGVELT 60
           MRFDL DL+LFIAV++ARSIT GA RA+LALASAS RIKGLEEA G+AL KRGRRGV LT
Sbjct: 1   MRFDLVDLKLFIAVAEARSITGGADRAHLALASASARIKGLEEAFGIALFKRGRRGVALT 60

Query: 61  AAGESLLGHARIVIHNVEALQSDLAAYASGVRANVLLLANTSGLSEHLPRALAAFLHEHP 120
           AAGESLL HAR++I NVEA+Q DL  +ASG+RANV LLANT GL+EHLPRALAAFL EHP
Sbjct: 61  AAGESLLDHARLIIANVEAMQGDLMGFASGLRANVQLLANTVGLAEHLPRALAAFLREHP 120

Query: 121 DISVDVEERESTDIATAIAS 140
           DI+VDVEERESTDIA AI S
Sbjct: 121 DINVDVEERESTDIAEAIVS 140


>ref|YP_001208077.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL79862.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS 278]
          Length = 296

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 122/140 (87%)

Query: 1   MRFDLTDLQLFIAVSDARSITQGAARANLALASASERIKGLEEALGVALLKRGRRGVELT 60
           MRFDL DL+LFIAV++ARSIT GA RA+LALASAS RIKGLEE  GVAL KRGRRGV+LT
Sbjct: 1   MRFDLVDLRLFIAVAEARSITGGADRAHLALASASARIKGLEETFGVALFKRGRRGVDLT 60

Query: 61  AAGESLLGHARIVIHNVEALQSDLAAYASGVRANVLLLANTSGLSEHLPRALAAFLHEHP 120
           AAGESLL HARIV+ +VE +Q DL+ +ASG RANV LLANT GL+EHLP+ALAAFL  HP
Sbjct: 61  AAGESLLEHARIVMAHVETMQGDLSGFASGQRANVQLLANTVGLAEHLPKALAAFLRAHP 120

Query: 121 DISVDVEERESTDIATAIAS 140
           +I+VDVEEREST+IA A+AS
Sbjct: 121 EINVDVEERESTEIAEAVAS 140


>ref|YP_530668.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD86349.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 296

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 112/131 (85%)

Query: 1   MRFDLTDLQLFIAVSDARSITQGAARANLALASASERIKGLEEALGVALLKRGRRGVELT 60
           M+FDL DL+LF A+++ARSIT GAAR +LALASAS RIK LE+ LGVALL RGRRGV LT
Sbjct: 1   MQFDLVDLRLFAAIAEARSITHGAARCHLALASASARIKALEQRLGVALLLRGRRGVTLT 60

Query: 61  AAGESLLGHARIVIHNVEALQSDLAAYASGVRANVLLLANTSGLSEHLPRALAAFLHEHP 120
           AAG+SLL HARIV+H  E L+ DL+AYA GV+A+V L+ANT+ LSEHLP+ALAAFL  HP
Sbjct: 61  AAGDSLLDHARIVLHATETLRGDLSAYARGVKASVRLIANTAALSEHLPKALAAFLSAHP 120

Query: 121 DISVDVEERES 131
           +IS+DVEERES
Sbjct: 121 NISIDVEERES 131


>ref|ZP_08627364.1| hydrogen peroxide response regulator [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP09990.1| hydrogen peroxide response regulator [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 297

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/142 (66%), Positives = 118/142 (83%)

Query: 1   MRFDLTDLQLFIAVSDARSITQGAARANLALASASERIKGLEEALGVALLKRGRRGVELT 60
           M FDL D++LF+AV++ARSIT GA R+ LALASAS RIKG+E ALGV LL+R  RGV LT
Sbjct: 1   MHFDLVDMRLFVAVAEARSITHGAERSALALASASARIKGMEAALGVPLLERQLRGVRLT 60

Query: 61  AAGESLLGHARIVIHNVEALQSDLAAYASGVRANVLLLANTSGLSEHLPRALAAFLHEHP 120
           AAGESLL HARIV+H V A+Q +L AYA G++A + +LANTSG SEHLP+ALA+FL +HP
Sbjct: 61  AAGESLLDHARIVLHQVAAMQGELTAYARGMKARIHMLANTSGASEHLPKALASFLADHP 120

Query: 121 DISVDVEERESTDIATAIASAS 142
            ISVD++ERES +IATA+AS +
Sbjct: 121 AISVDIDERESAEIATALASGA 142