BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0208.0004.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237521.1| hypothetical protein BBta_1382 [Bradyrhizobi... 245 4e-63 ref|YP_001208082.1| putative cytochrome c region [Bradyrhizobium... 242 2e-62 ref|NP_774378.1| hypothetical protein blr7738 [Bradyrhizobium ja... 198 4e-49 ref|YP_001783633.1| glutamine amidotransferase class-II [Haemoph... 41 0.13 ref|ZP_08085850.1| hypothetical protein HMPREF0663_12386 [Prevot... 41 0.15 >ref|YP_001237521.1| hypothetical protein BBta_1382 [Bradyrhizobium sp. BTAi1] gb|ABQ33615.1| hypothetical protein BBta_1382 [Bradyrhizobium sp. BTAi1] Length = 935 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 124/204 (60%), Positives = 146/204 (71%), Gaps = 7/204 (3%) Query: 14 ISPDNPCPFLRALVAGNYVGGHIVPLPELTGTIGRATGKTGFEGLTARAKIFMVAQIANG 73 +SPDNPCPFLRALVAG +V GH VPL ++ I A+G+TGF+ + F VA IANG Sbjct: 18 VSPDNPCPFLRALVAGGFVDGHTVPLKTISARIEAASGETGFKKRIVGIETFGVALIANG 77 Query: 74 LGPFSQLRSLFQGAILDALRNGPLDKHGAGSRILDQHAVVHEDEIARLATFGKDYKAPDG 133 L P L+SLF GA LD LRNGPLDKHG GSRILD A VH EI R A+FG DY P+G Sbjct: 78 LSPLRLLKSLFSGADLDELRNGPLDKHGGGSRILDAKADVHPAEIDRFASFGSDYPDPNG 137 Query: 134 SVERGLSAAEIKTFMAANFQRARDEHPQSYGILHCYYPLLMLGEWPVLLDIMGKGEGKDR 193 ERGL+AA+I+TFM AN +R D+ YYPLLM GEWPVLL ++GKG+G +R Sbjct: 138 GTERGLNAAQIQTFMKANLKRDGDKA-------RWYYPLLMQGEWPVLLRVIGKGDGDNR 190 Query: 194 YLSVAEVRTLFVDKRFPDRIVALL 217 YLSVAEVRTLFV++R P RIVA L Sbjct: 191 YLSVAEVRTLFVERRLPQRIVARL 214 >ref|YP_001208082.1| putative cytochrome c region [Bradyrhizobium sp. ORS 278] emb|CAL79867.1| conserved hypothetical protein; putative Cytochrome c region (C-ter) [Bradyrhizobium sp. ORS 278] Length = 935 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/204 (59%), Positives = 144/204 (70%), Gaps = 7/204 (3%) Query: 14 ISPDNPCPFLRALVAGNYVGGHIVPLPELTGTIGRATGKTGFEGLTARAKIFMVAQIANG 73 +SPDNPCPFLRALVAG +V GH VPL + + A+G+TG + + F VA IANG Sbjct: 18 VSPDNPCPFLRALVAGGFVDGHSVPLKTIAHQVEAASGETGLKKRLVGIETFGVALIANG 77 Query: 74 LGPFSQLRSLFQGAILDALRNGPLDKHGAGSRILDQHAVVHEDEIARLATFGKDYKAPDG 133 PF L+SLF GA LD LRNGPLDKHG GSRILD A VH EI R A+FG DY P+G Sbjct: 78 FSPFRLLKSLFSGADLDQLRNGPLDKHGGGSRILDVQATVHPQEIDRFASFGSDYPDPNG 137 Query: 134 SVERGLSAAEIKTFMAANFQRARDEHPQSYGILHCYYPLLMLGEWPVLLDIMGKGEGKDR 193 ERGL+AA+I+ FM AN QR D Y+P+LM GEWPVLL+I+GKGEG+DR Sbjct: 138 GTERGLNAAQIQAFMKANLQRDGDH-------ARWYFPILMQGEWPVLLNILGKGEGEDR 190 Query: 194 YLSVAEVRTLFVDKRFPDRIVALL 217 YL+VA+V TLFV++RFP RIVA L Sbjct: 191 YLAVADVHTLFVERRFPQRIVARL 214 >ref|NP_774378.1| hypothetical protein blr7738 [Bradyrhizobium japonicum USDA 110] dbj|BAC53003.1| blr7738 [Bradyrhizobium japonicum USDA 110] Length = 932 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 137/207 (66%), Gaps = 13/207 (6%) Query: 10 PAPQISPDNPCPFLRALVAGNYVGGHIVPLPELTGTIGRATGKTGFEGLTARAKIFMVAQ 69 P+ +SP+NPCPFLR LV +V G VPL L+ TI A+G+TG AR ++ VA Sbjct: 12 PSIGVSPNNPCPFLRGLVGEGFVDGGTVPLNTLSQTIANASGETGLMKSWARIQVRGVAL 71 Query: 70 IANGLGPFSQ-LRSLFQGAILDALRNGPLDKHGAGSRILDQHAVVHEDEIARLATFGKDY 128 IANG FS L+S+ G LD LR GPLDK GAGSR+L V+EDEIARL +FG+ Y Sbjct: 72 IANG---FSHILKSIRSGPQLDELRGGPLDKRGAGSRVLGVDGKVNEDEIARLQSFGRTY 128 Query: 129 KAPD-GSVERGLSAAEIKTFMAANFQRARDEHPQSYGILHCYYPLLMLGEWPVLLDIMGK 187 PD GS E GL+AAEIKTFM N +RA + YYP+LM EWPVLL IMGK Sbjct: 129 TDPDTGSSEPGLNAAEIKTFMHENLKRAG-------SAVRWYYPVLMQFEWPVLLKIMGK 181 Query: 188 GEGK-DRYLSVAEVRTLFVDKRFPDRI 213 G GK DRYLSVA+VRTL ++FPDRI Sbjct: 182 GTGKEDRYLSVADVRTLLNARQFPDRI 208 >ref|YP_001783633.1| glutamine amidotransferase class-II [Haemophilus somnus 2336] gb|ACA31912.1| glutamine amidotransferase class-II [Haemophilus somnus 2336] Length = 275 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query: 7 RAAPAPQISPDNPCPFLRALVAGNYV---GGHIVPLPELTGTIGRATGKTGFEGLTARAK 63 R A +++ +N PF+R L N+V G++ LP++T ++ + G T E A Sbjct: 79 RKATQGEVNIENTHPFIRELWGENWVFAHNGNLNSLPDMTESLFQPIGSTDSE----TAF 134 Query: 64 IFMVAQIA-------NGLGPFSQLRSLFQGAILDALRNGPLDKHGAGSRILDQHAVVHED 116 +M++Q+ N FS ++ L Q + R G + + + H + Sbjct: 135 CYMLSQLKKRFPKKPNEQDMFSAIQKLTQ----ELTRRGTFNFILSNGEWMMAHCSTNLH 190 Query: 117 EIARLATFGKDYKAPDGSV--ERGLSAAEIKTFMAANFQRARDEH 159 + R A FGK + D ++ R + K + F +DEH Sbjct: 191 YLTRKAPFGKAQRIDDDNIIDFRDYAKETDKVTIITTFPLTKDEH 235 >ref|ZP_08085850.1| hypothetical protein HMPREF0663_12386 [Prevotella oralis ATCC 33269] gb|EFZ36319.1| hypothetical protein HMPREF0663_12386 [Prevotella oralis ATCC 33269] Length = 1109 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 26/132 (19%) Query: 49 ATGKTGFEGLTARAKIFMVAQIANGLGPFSQLRSLFQGAILDAL-RNGPLDKHGAGSRIL 107 A+G G + T + + QI + PF +S F G ++A+ ++G D HG+ Sbjct: 237 ASGSNGGQANTQPVSMETIDQIQINIAPFDVRQSGFTGGAINAITKSGTNDFHGSAYAYG 296 Query: 108 DQHAVVHEDEIARLATFGKDYKAPDGSV------ER--------GLSAAEIKTFMAANFQ 153 + +V G+ YK PDG+ ER G + K F AN++ Sbjct: 297 NNENLV-----------GRHYKNPDGTYAQPYQDEREYLFGFTLGGPIVKNKLFFFANYE 345 Query: 154 RARDEHPQSYGI 165 ++ +P YG+ Sbjct: 346 KSDKHYPNQYGL 357