BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0008.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486738.1| binding-protein dependent transport system inne... 324 6e-87 ref|YP_004108770.1| binding-protein-dependent transporter inner ... 323 9e-87 ref|YP_533347.1| binding-protein-dependent transport systems inn... 322 2e-86 ref|NP_947674.1| putative ABC transporter permease [Rhodopseudom... 322 3e-86 ref|YP_003451533.1| peptide/nickel transport system permease pro... 289 2e-76 >ref|YP_486738.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD07827.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 279 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 158/209 (75%), Positives = 186/209 (88%) Query: 4 AGVAYGARVSLLIGIASALAAMAIGVVIGAISGYFGGKIDLVLMRMTELFQTIPAFVLAI 63 AG+AYGARVSL IG+AS LAA+ IGVVIGAI+GYFGG++D ++MR+TELFQTIP F+LAI Sbjct: 67 AGIAYGARVSLTIGVASTLAALCIGVVIGAIAGYFGGRVDELMMRITELFQTIPGFILAI 126 Query: 64 LLVATFNPSLLTIILTIGAVSWPPLARLTRAEFLRLRHREFVEAALCQGERTWRIVLGHI 123 LLVAT P+L +I++IGAVSWPPLARLTRAEF+RLR REFV+AA+CQG+ + L HI Sbjct: 127 LLVATIGPTLTNVIISIGAVSWPPLARLTRAEFMRLRGREFVQAAVCQGQAPLVVALRHI 186 Query: 124 LPNAISPILVVTSLTVATAILLESALSFMGLGDPNLMSWGFMIGAGRTVIRNAWWMSVFP 183 LPNAISPI+V SLT+ATAIL+ESALSFMGLGDPNLMSWG MIGA RTVIR AWWMS+FP Sbjct: 187 LPNAISPIIVTGSLTIATAILIESALSFMGLGDPNLMSWGLMIGASRTVIRQAWWMSMFP 246 Query: 184 GLAILVTVLAINLFGEGLSDVLNPRVSRR 212 G+AIL+TVLAINL GEGL+D LNPR+SR+ Sbjct: 247 GIAILLTVLAINLVGEGLNDTLNPRISRK 275 >ref|YP_004108770.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU44037.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 279 Score = 323 bits (829), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 158/209 (75%), Positives = 185/209 (88%) Query: 4 AGVAYGARVSLLIGIASALAAMAIGVVIGAISGYFGGKIDLVLMRMTELFQTIPAFVLAI 63 AG+AYGARVSL IG+AS LAA+ IGVVIGAI+GYFGG++D +MR+TELFQTIP F+LAI Sbjct: 67 AGIAYGARVSLTIGVASTLAALCIGVVIGAIAGYFGGRVDDAMMRVTELFQTIPGFILAI 126 Query: 64 LLVATFNPSLLTIILTIGAVSWPPLARLTRAEFLRLRHREFVEAALCQGERTWRIVLGHI 123 LLVAT P+L +I++IGAVSWPPLARLTRAEF+RLR REFV+AA+CQG+ + L HI Sbjct: 127 LLVATIGPTLTNVIISIGAVSWPPLARLTRAEFMRLRGREFVQAAVCQGQAPMVVALRHI 186 Query: 124 LPNAISPILVVTSLTVATAILLESALSFMGLGDPNLMSWGFMIGAGRTVIRNAWWMSVFP 183 LPNAISPI+V SLT+ATAIL+ESALSFMGLGDPNLMSWG MIGA RTVIR AWWMS+FP Sbjct: 187 LPNAISPIIVTGSLTIATAILIESALSFMGLGDPNLMSWGLMIGASRTVIRQAWWMSMFP 246 Query: 184 GLAILVTVLAINLFGEGLSDVLNPRVSRR 212 G+AIL+TVLAINL GEGL+D LNPR+SR+ Sbjct: 247 GIAILLTVLAINLVGEGLNDTLNPRISRK 275 >ref|YP_533347.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD89028.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 279 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 160/209 (76%), Positives = 187/209 (89%) Query: 4 AGVAYGARVSLLIGIASALAAMAIGVVIGAISGYFGGKIDLVLMRMTELFQTIPAFVLAI 63 AG+A+GARVSL IG+AS LAA+ IGVV+GAI+GYFGGK+D ++MR+TELFQTIP F+LAI Sbjct: 67 AGIAHGARVSLSIGVASTLAAVCIGVVVGAIAGYFGGKVDDLMMRVTELFQTIPGFILAI 126 Query: 64 LLVATFNPSLLTIILTIGAVSWPPLARLTRAEFLRLRHREFVEAALCQGERTWRIVLGHI 123 LLVAT P+L +I+ IGAVSWPPLARLTRAEFLRLR REFV+AA+CQG+ +VL HI Sbjct: 127 LLVATLGPTLSNVIIAIGAVSWPPLARLTRAEFLRLRGREFVQAAVCQGQPPMVVVLRHI 186 Query: 124 LPNAISPILVVTSLTVATAILLESALSFMGLGDPNLMSWGFMIGAGRTVIRNAWWMSVFP 183 LPNAISPI+V SLT+ATAIL+ESALSF+GLGDPNLMSWGFMIGA RTV+R AWWMSVFP Sbjct: 187 LPNAISPIIVTGSLTIATAILIESALSFLGLGDPNLMSWGFMIGASRTVMRQAWWMSVFP 246 Query: 184 GLAILVTVLAINLFGEGLSDVLNPRVSRR 212 G+AIL+TVLAINL GEGL+D LNPR+SRR Sbjct: 247 GIAILLTVLAINLVGEGLNDTLNPRISRR 275 >ref|NP_947674.1| putative ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001991561.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] emb|CAE27770.1| putative ABC transporter permease protein [Rhodopseudomonas palustris CGA009] gb|ACF01086.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 279 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 157/209 (75%), Positives = 185/209 (88%) Query: 4 AGVAYGARVSLLIGIASALAAMAIGVVIGAISGYFGGKIDLVLMRMTELFQTIPAFVLAI 63 AG+AYGARVSL IG+AS LAA+ IGV IGAI+GYFGG++D +MR+TELFQTIP F+LAI Sbjct: 67 AGIAYGARVSLTIGVASTLAALCIGVTIGAIAGYFGGRVDDFMMRLTELFQTIPGFILAI 126 Query: 64 LLVATFNPSLLTIILTIGAVSWPPLARLTRAEFLRLRHREFVEAALCQGERTWRIVLGHI 123 LLVAT P+L +I++IGAVSWPPLARLTRAEF+RLR REFV+AA+CQG+ + L HI Sbjct: 127 LLVATIGPTLTNVIISIGAVSWPPLARLTRAEFMRLRGREFVQAAVCQGQAPLIVALRHI 186 Query: 124 LPNAISPILVVTSLTVATAILLESALSFMGLGDPNLMSWGFMIGAGRTVIRNAWWMSVFP 183 LPNAISPI+V SLT+ATAIL+ESALSFMGLGDPNLMSWG MIGA RTVIR AWWMSVFP Sbjct: 187 LPNAISPIIVTGSLTIATAILIESALSFMGLGDPNLMSWGLMIGASRTVIRQAWWMSVFP 246 Query: 184 GLAILVTVLAINLFGEGLSDVLNPRVSRR 212 G+AIL+TVLAINL GEGL+D+LNPR++R+ Sbjct: 247 GIAILLTVLAINLVGEGLNDMLNPRIARK 275 >ref|YP_003451533.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] dbj|BAI74989.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] Length = 280 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 142/210 (67%), Positives = 175/210 (83%) Query: 4 AGVAYGARVSLLIGIASALAAMAIGVVIGAISGYFGGKIDLVLMRMTELFQTIPAFVLAI 63 +G+A+GARVSLLIG+ S AA+AIGV +GA++G+ GG++D +MR TELFQTIP FVLA+ Sbjct: 70 SGIAHGARVSLLIGLTSTAAALAIGVTLGALAGFHGGRVDDAIMRFTELFQTIPNFVLAV 129 Query: 64 LLVATFNPSLLTIILTIGAVSWPPLARLTRAEFLRLRHREFVEAALCQGERTWRIVLGHI 123 +LVA F PSL TI+ I VSWPPLARL RAEFL LR REFV+AA+ G+ + I+L I Sbjct: 130 VLVAIFTPSLTTIVAAIAIVSWPPLARLARAEFLSLRTREFVQAAITTGQSSGTIILRQI 189 Query: 124 LPNAISPILVVTSLTVATAILLESALSFMGLGDPNLMSWGFMIGAGRTVIRNAWWMSVFP 183 LPN++SPI+V SL VATAILLES+LSF+GLGDPN MSWG+MIGA RTVIR AWWMSVFP Sbjct: 190 LPNSLSPIIVSASLMVATAILLESSLSFLGLGDPNAMSWGYMIGAARTVIRQAWWMSVFP 249 Query: 184 GLAILVTVLAINLFGEGLSDVLNPRVSRRR 213 GLAI++TVLA+NL GEGL+D LNP+++R R Sbjct: 250 GLAIVLTVLALNLVGEGLNDALNPKLARSR 279