BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0006.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486739.1| binding-protein dependent transport system inne... 449 e-124 ref|YP_533348.1| binding-protein-dependent transport systems inn... 448 e-124 ref|NP_947673.1| putative ABC transporter permease [Rhodopseudom... 444 e-123 ref|YP_004108769.1| binding-protein-dependent transporter inner ... 436 e-120 ref|YP_003451534.1| peptide/nickel transport system permease pro... 382 e-104 >ref|YP_486739.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD07828.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 340 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/325 (68%), Positives = 268/325 (82%) Query: 9 AIGLQAVSRIAQLVAVILVIATFNFVLVRAAPGDPAQVMAGQSGASDPKLLDDLRKEYGL 68 AI + V +A+ VAV+LVIATFNFVLV AAPGDPAQVMAGQSGA+D ++L LR EYGL Sbjct: 15 AIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAADEEMLTRLRAEYGL 74 Query: 69 DKPYFVQLVSHLGRVVRLDLGYSYRQRRPVVDLILERLPATLLLTVTAFCLALLIGTALG 128 DKPY VQL +L R+V LDLGYSYRQ+R V+ LI ERLPATLLLT AF L+L G +LG Sbjct: 75 DKPYPVQLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTCCAFLLSLSAGVSLG 134 Query: 129 ALAGLAAGSVLDTVFTVLSLVLYATPVFWLGLMLVLVFSVTLGWLPPFGYETINVQLSPV 188 LAG+ AG DT T++SL LYA PVFWLGLMLVL+FSV L WLP FGY TI VQ++P Sbjct: 135 TLAGVRAGKWSDTALTIVSLFLYAMPVFWLGLMLVLLFSVQLDWLPAFGYVTIGVQMTPF 194 Query: 189 EHALDIMKHMIMPVTSLAAIYLAIYARLMRSSIIEVAQQDFIKTARAKGLSGTRIVVGHM 248 E A DI H+++PV SL A++LAIYARLMRS++I+VA QDFIKTARAKGL +I+V HM Sbjct: 195 ERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTARAKGLRRGQIIVHHM 254 Query: 249 LRNALVPVATVAGMQAGALVGGAVVIETVFAWPGLGRLTFEALLQRDYPVLLGIFLILSI 308 LRNA++PV TVAGMQAG LVGGAVVIETVFAWPGLGRLTF+A+LQRDYP++LGIFL++S+ Sbjct: 255 LRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSV 314 Query: 309 VVIALNLLTDLVYRLIDPRMTTGAA 333 +VI LNLLTD +YR++DPR++ AA Sbjct: 315 IVIGLNLLTDAIYRIVDPRVSLRAA 339 >ref|YP_533348.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD89029.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 340 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/332 (67%), Positives = 270/332 (81%) Query: 2 TRLGSAAAIGLQAVSRIAQLVAVILVIATFNFVLVRAAPGDPAQVMAGQSGASDPKLLDD 61 T++G A+ L A+ VAV+LVIATFNFVLV AAPGDPAQV+AGQSG++D KLL Sbjct: 8 TKVGRGVAVALAIAGWFARFVAVVLVIATFNFVLVHAAPGDPAQVIAGQSGSADAKLLAQ 67 Query: 62 LRKEYGLDKPYFVQLVSHLGRVVRLDLGYSYRQRRPVVDLILERLPATLLLTVTAFCLAL 121 LR EYGLDKPY VQL ++L R+V LDLGYSYRQ+R V+ L+ ERLPATLLLT TAF LAL Sbjct: 68 LRAEYGLDKPYPVQLATYLKRIVTLDLGYSYRQQRSVLSLLGERLPATLLLTCTAFFLAL 127 Query: 122 LIGTALGALAGLAAGSVLDTVFTVLSLVLYATPVFWLGLMLVLVFSVTLGWLPPFGYETI 181 G LG LAG+ AG DT T++SL+LYA PVFWLGLMLVL+FSV L WLP FGY TI Sbjct: 128 AAGVLLGTLAGMRAGKWSDTALTIVSLLLYAMPVFWLGLMLVLLFSVKLDWLPAFGYVTI 187 Query: 182 NVQLSPVEHALDIMKHMIMPVTSLAAIYLAIYARLMRSSIIEVAQQDFIKTARAKGLSGT 241 V+++ E D+ H+++P SLAA+++AIYARLMRSS+IE+A QDFIKTARAKGL Sbjct: 188 GVEMTAFERMRDVASHLVLPAVSLAAVHMAIYARLMRSSVIELAHQDFIKTARAKGLKQG 247 Query: 242 RIVVGHMLRNALVPVATVAGMQAGALVGGAVVIETVFAWPGLGRLTFEALLQRDYPVLLG 301 RIV H+LRNA++PV TVAGMQAGALVGGAVVIETVFAWPGLGRLT++A+LQRDYPV+LG Sbjct: 248 RIVAHHILRNAILPVVTVAGMQAGALVGGAVVIETVFAWPGLGRLTYDAVLQRDYPVMLG 307 Query: 302 IFLILSIVVIALNLLTDLVYRLIDPRMTTGAA 333 IFL++S++VI LNL+TD +YRL+DPR++ AA Sbjct: 308 IFLMMSVIVILLNLVTDAIYRLVDPRVSLRAA 339 >ref|NP_947673.1| putative ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001991560.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] emb|CAE27769.1| putative ABC transporter permease protein [Rhodopseudomonas palustris CGA009] gb|ACF01085.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 340 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/325 (67%), Positives = 268/325 (82%) Query: 9 AIGLQAVSRIAQLVAVILVIATFNFVLVRAAPGDPAQVMAGQSGASDPKLLDDLRKEYGL 68 AI L V + VAV+LVIATFNFVLV AAPGDPAQVMAGQSG++D ++L LR +YGL Sbjct: 15 AIALAVVRWAVRFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGSADEQMLAQLRADYGL 74 Query: 69 DKPYFVQLVSHLGRVVRLDLGYSYRQRRPVVDLILERLPATLLLTVTAFCLALLIGTALG 128 DKPY VQL +L R+V LDLGYSYRQ+R V+ LI ERLPATLLLT +AF L+L +G +LG Sbjct: 75 DKPYPVQLAIYLKRIVTLDLGYSYRQQRTVLSLIAERLPATLLLTCSAFLLSLAVGVSLG 134 Query: 129 ALAGLAAGSVLDTVFTVLSLVLYATPVFWLGLMLVLVFSVTLGWLPPFGYETINVQLSPV 188 LAG+ AG DT TV+SL LYA PVFWLGLMLVL+FSV L WLP FGY TI VQ++P Sbjct: 135 TLAGVRAGKWSDTALTVVSLFLYAMPVFWLGLMLVLLFSVQLDWLPAFGYVTIGVQMTPF 194 Query: 189 EHALDIMKHMIMPVTSLAAIYLAIYARLMRSSIIEVAQQDFIKTARAKGLSGTRIVVGHM 248 E DI H+++PV SL A++LAIYARLMRS++I+VA QDFIKTARAKGL +I++ HM Sbjct: 195 ERIRDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTARAKGLKRGQIIIHHM 254 Query: 249 LRNALVPVATVAGMQAGALVGGAVVIETVFAWPGLGRLTFEALLQRDYPVLLGIFLILSI 308 LRNA++PV TVAGMQAG LVGGAVVIETVFAWPGLGRLTF+A+LQRDYP++LGIFL++S+ Sbjct: 255 LRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSV 314 Query: 309 VVIALNLLTDLVYRLIDPRMTTGAA 333 +VI+LNL+TD +YR++DPR++ AA Sbjct: 315 IVISLNLITDAIYRIVDPRVSLRAA 339 >ref|YP_004108769.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU44036.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 340 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/306 (69%), Positives = 258/306 (84%) Query: 28 IATFNFVLVRAAPGDPAQVMAGQSGASDPKLLDDLRKEYGLDKPYFVQLVSHLGRVVRLD 87 IATFNFVLV AAPGDPAQVMAGQSGA+D ++L LR EYGLDKPY VQL +L R+V LD Sbjct: 34 IATFNFVLVHAAPGDPAQVMAGQSGAADEEMLTRLRAEYGLDKPYPVQLAIYLKRIVTLD 93 Query: 88 LGYSYRQRRPVVDLILERLPATLLLTVTAFCLALLIGTALGALAGLAAGSVLDTVFTVLS 147 LGYSYRQ+R V+ LI ERLPATLLLT +AF L+L +G +LG LAG+ AG DT T++S Sbjct: 94 LGYSYRQQRSVLSLIAERLPATLLLTCSAFLLSLSVGVSLGTLAGVRAGKWSDTALTIVS 153 Query: 148 LVLYATPVFWLGLMLVLVFSVTLGWLPPFGYETINVQLSPVEHALDIMKHMIMPVTSLAA 207 L LYA PVFWLGLMLVL+FSV L WLP FGY TI V+++P+E A DI H+I+PV SL A Sbjct: 154 LFLYAMPVFWLGLMLVLLFSVQLDWLPAFGYVTIGVEMTPLERARDIAAHLILPVISLGA 213 Query: 208 IYLAIYARLMRSSIIEVAQQDFIKTARAKGLSGTRIVVGHMLRNALVPVATVAGMQAGAL 267 ++LAIYARLMRS++I+VA QDFIKTARAKGL +I++ HMLRNA++PV TVAGMQAG L Sbjct: 214 VHLAIYARLMRSAVIDVAHQDFIKTARAKGLKRGQIIIRHMLRNAVLPVVTVAGMQAGTL 273 Query: 268 VGGAVVIETVFAWPGLGRLTFEALLQRDYPVLLGIFLILSIVVIALNLLTDLVYRLIDPR 327 VGGAVVIETVFAWPGLGRLTF+A+LQRDYP++LGIFL++S++VI LNLLTD +YR++DPR Sbjct: 274 VGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSVIVIGLNLLTDAIYRVVDPR 333 Query: 328 MTTGAA 333 ++ AA Sbjct: 334 VSLRAA 339 >ref|YP_003451534.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] dbj|BAI74990.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] Length = 326 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/313 (57%), Positives = 248/313 (79%) Query: 16 SRIAQLVAVILVIATFNFVLVRAAPGDPAQVMAGQSGASDPKLLDDLRKEYGLDKPYFVQ 75 SR+ + A+++ I NF LV AAPGDPA VMAG++GA+D K + LR+++GLD+P Q Sbjct: 10 SRLVKAAAILIAIVVMNFFLVHAAPGDPAMVMAGEAGAADEKFVAQLREQFGLDRPLIEQ 69 Query: 76 LVSHLGRVVRLDLGYSYRQRRPVVDLILERLPATLLLTVTAFCLALLIGTALGALAGLAA 135 L +++G+V++ DLG+SYRQ+RPV D++ ERLPATL+LT+TAF LAL G ALG LA +A Sbjct: 70 LATYVGKVMQGDLGFSYRQQRPVRDILAERLPATLVLTLTAFVLALAAGVALGTLAAVAV 129 Query: 136 GSVLDTVFTVLSLVLYATPVFWLGLMLVLVFSVTLGWLPPFGYETINVQLSPVEHALDIM 195 G+ D+ TV++L+ YATP++W+GLML L+FS+ LGWLP FGYETI + + H D+ Sbjct: 130 GTWADSAITVIALLAYATPIYWIGLMLSLLFSIQLGWLPAFGYETIGAGYTGLAHVADVA 189 Query: 196 KHMIMPVTSLAAIYLAIYARLMRSSIIEVAQQDFIKTARAKGLSGTRIVVGHMLRNALVP 255 H+I+PV +LA Y+A YARL R+S++EV DF+KTA+AKGL+ +RIV H+LRNA++P Sbjct: 190 AHLILPVITLALFYMAGYARLTRASMLEVRGLDFVKTAKAKGLTKSRIVTRHVLRNAILP 249 Query: 256 VATVAGMQAGALVGGAVVIETVFAWPGLGRLTFEALLQRDYPVLLGIFLILSIVVIALNL 315 V TVAG+QAG LVGG+++IETVFAWPG+GRL FEA+LQRDY VLLGIFL+ S++VI N+ Sbjct: 250 VITVAGIQAGQLVGGSILIETVFAWPGIGRLAFEAVLQRDYQVLLGIFLVTSVMVILFNI 309 Query: 316 LTDLVYRLIDPRM 328 LTD++Y L+DPR+ Sbjct: 310 LTDILYGLVDPRI 322