BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0005.p (525 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533349.1| extracellular solute-binding protein [Rhodopseu... 822 0.0 ref|YP_004108768.1| family 5 extracellular solute-binding protei... 820 0.0 ref|YP_486740.1| twin-arginine translocation pathway signal [Rho... 817 0.0 ref|NP_947672.1| putative ABC transporter oligopeptide-binding p... 804 0.0 ref|YP_003451535.1| peptide/nickel transport system substrate-bi... 622 e-176 >ref|YP_533349.1| extracellular solute-binding protein [Rhodopseudomonas palustris BisB18] gb|ABD89030.1| extracellular solute-binding protein, family 5 [Rhodopseudomonas palustris BisB18] Length = 529 Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/526 (72%), Positives = 441/526 (83%), Gaps = 4/526 (0%) Query: 1 MNRREFTKAMLACG----AAIPFGITRAAGQSRGGTLNIIIQPEPPVLVTALNQQQPTLT 56 MNRREF K LA G P G+TRAAGQSRGGTLN IIQPEPP+LVTALNQQQPTLT Sbjct: 1 MNRREFAKLGLAAGMVSIGGFPIGVTRAAGQSRGGTLNTIIQPEPPILVTALNQQQPTLT 60 Query: 57 LGGKIYEGLLKYGADLKPMPGMAQSWEVSPDGLTYTFKLFPGITFHDGKPMTSEDVVFSC 116 LGGKIYE LL+Y DLKPMPG+AQSWE+SPD LTYTFKL+P ITFHDG P+TSEDVVFS Sbjct: 61 LGGKIYESLLRYDFDLKPMPGLAQSWEISPDRLTYTFKLYPNITFHDGTPLTSEDVVFSV 120 Query: 117 MKLLVETHPRARQNFARVASAEAPDPLTVVFKLKQPFAPFIGCFDCTSAPIVPKHIYDGT 176 MK+L+E H RAR F+R+ AEAPDP+TVVFKLK PF+PF+ FDCT+APIVPKHIY+GT Sbjct: 121 MKILIENHSRARSTFSRIDKAEAPDPVTVVFKLKAPFSPFLTAFDCTTAPIVPKHIYEGT 180 Query: 177 DYRKNPENDKAIGTGPFKLKEWVRGSHVHLVRHDGYYQKDQPYLDEIVYRVIPDAASRAL 236 D+RKNP N +AIG GPFKLKEWVRGSHVHLVRH+GYY+ +PYLDEI+YRVIPD+ASR++ Sbjct: 181 DFRKNPANARAIGCGPFKLKEWVRGSHVHLVRHEGYYRPGEPYLDEIIYRVIPDSASRSV 240 Query: 237 ALENGTVQLVQWSDVEFYDVQRFKAQKNLEFTTKGYEYFAPHQWLEMNNRIAPMNDKRFR 296 ALE GTVQL QWSDVE ++VQR NL TTKGYE+FAPHQWLE NNRIAPMNDKRFR Sbjct: 241 ALEQGTVQLTQWSDVESFEVQRLSKLPNLAMTTKGYEFFAPHQWLEFNNRIAPMNDKRFR 300 Query: 297 QAVMHLIDREAFSKRVYFGNAKVATGPISSKTRFYDPNVKRYEFSVDKAKALLDDMGLKP 356 QAV+ IDR+A RVYFG KVATGP+SSKT+FY+ +VK Y++S+DKAKALLD+MGLKP Sbjct: 301 QAVLFAIDRKALLNRVYFGLGKVATGPVSSKTKFYEKDVKPYDYSLDKAKALLDEMGLKP 360 Query: 357 GANGKRAEIKYIVPPYGESYQRAGEFFRQSFARVGIDLVLVGTDMAGWAEKVGNWDYEMT 416 GA+GKR I Y+VPPYGES+QR EF RQS ARVGIDL L G D+AGWA+K NWD+ MT Sbjct: 361 GADGKRVSIPYLVPPYGESHQRTAEFIRQSLARVGIDLQLQGIDLAGWADKYSNWDFSMT 420 Query: 417 QNLLYQLGDPALGVARTYISSNIKKGILFSNTQGYSNPEVDKLFDEAAVTLDEAKRQELY 476 ++YQ GDPALGVARTY+SSNI KGILFSNT GYSNPEVD+LF+EAAV D+AKRQ+ Y Sbjct: 421 ATVVYQFGDPALGVARTYVSSNIHKGILFSNTAGYSNPEVDRLFEEAAVAGDDAKRQQCY 480 Query: 477 SKVQQILVEDVPVAWTLEIEYPIIYDKAFKNIVTTGIGSHETFGSV 522 S Q+++VEDVPVAW LE++YP DK KN++TT IG H+TFG+V Sbjct: 481 SDAQKLIVEDVPVAWLLEMDYPNFMDKRLKNVITTAIGVHDTFGTV 526 >ref|YP_004108768.1| family 5 extracellular solute-binding protein [Rhodopseudomonas palustris DX-1] gb|ADU44035.1| extracellular solute-binding protein family 5 [Rhodopseudomonas palustris DX-1] Length = 529 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/526 (72%), Positives = 441/526 (83%), Gaps = 4/526 (0%) Query: 1 MNRREFTKAMLACGAA----IPFGITRAAGQSRGGTLNIIIQPEPPVLVTALNQQQPTLT 56 MNRREFTK L GAA IP GITRAAGQ+RGGTLN IIQPEPP+LVTALNQQQPTLT Sbjct: 1 MNRREFTKLGLLAGAAGIGGIPLGITRAAGQTRGGTLNTIIQPEPPILVTALNQQQPTLT 60 Query: 57 LGGKIYEGLLKYGADLKPMPGMAQSWEVSPDGLTYTFKLFPGITFHDGKPMTSEDVVFSC 116 LGGKIYE LL+Y DLKP+PG+AQSWEVSPD LTYTFKLFP ITFHDG P+TSEDVVFS Sbjct: 61 LGGKIYESLLRYDFDLKPLPGLAQSWEVSPDKLTYTFKLFPNITFHDGTPLTSEDVVFSV 120 Query: 117 MKLLVETHPRARQNFARVASAEAPDPLTVVFKLKQPFAPFIGCFDCTSAPIVPKHIYDGT 176 MK+L+E H RAR F+RV AEAPDPLTVVFKLK PFAPF+ FDCT+APIVPKHIY+GT Sbjct: 121 MKILMENHARARNTFSRVEKAEAPDPLTVVFKLKTPFAPFLTAFDCTTAPIVPKHIYEGT 180 Query: 177 DYRKNPENDKAIGTGPFKLKEWVRGSHVHLVRHDGYYQKDQPYLDEIVYRVIPDAASRAL 236 DYRKNP N KAIG+GPFKLKEWVRGSHVHLV+H+GYY+ +P LDEI+YRVIPD+ASR++ Sbjct: 181 DYRKNPANAKAIGSGPFKLKEWVRGSHVHLVKHEGYYRPGEPVLDEIIYRVIPDSASRSV 240 Query: 237 ALENGTVQLVQWSDVEFYDVQRFKAQKNLEFTTKGYEYFAPHQWLEMNNRIAPMNDKRFR 296 ALE GTVQL QW+DVE ++V R NL TTKGYE+FAPH WLE NNR+AP+NDKRFR Sbjct: 241 ALEQGTVQLTQWTDVELFEVPRLSKLPNLTMTTKGYEFFAPHTWLEFNNRVAPLNDKRFR 300 Query: 297 QAVMHLIDREAFSKRVYFGNAKVATGPISSKTRFYDPNVKRYEFSVDKAKALLDDMGLKP 356 QAVM+ IDR+A RVYFG KVATGP+SSKT+FY+ NVK Y++S +KAKALLD+MGLKP Sbjct: 301 QAVMYAIDRKALLARVYFGLGKVATGPVSSKTKFYEKNVKSYDYSPEKAKALLDEMGLKP 360 Query: 357 GANGKRAEIKYIVPPYGESYQRAGEFFRQSFARVGIDLVLVGTDMAGWAEKVGNWDYEMT 416 G +GKR I Y+VPPYGE++QRA EF RQS ARVGIDL L G D+AGWAEK NWD+ MT Sbjct: 361 GPDGKRVSIPYLVPPYGETHQRASEFLRQSLARVGIDLQLKGIDVAGWAEKFSNWDFSMT 420 Query: 417 QNLLYQLGDPALGVARTYISSNIKKGILFSNTQGYSNPEVDKLFDEAAVTLDEAKRQELY 476 +YQ GDPALGV+R+Y+SSNI+KGILFSNT GYSNPEVD+LF+EAAV + KRQE Y Sbjct: 421 STTVYQFGDPALGVSRSYVSSNIRKGILFSNTCGYSNPEVDRLFEEAAVATSDEKRQEHY 480 Query: 477 SKVQQILVEDVPVAWTLEIEYPIIYDKAFKNIVTTGIGSHETFGSV 522 S +Q+I+VE+VPVAW LEI+YP DK KN+VTT IG H+TFG+V Sbjct: 481 SALQKIMVEEVPVAWLLEIDYPNFMDKRLKNVVTTAIGVHDTFGTV 526 >ref|YP_486740.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] gb|ABD07829.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] Length = 529 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/526 (72%), Positives = 439/526 (83%), Gaps = 4/526 (0%) Query: 1 MNRREFTKAMLACGAA----IPFGITRAAGQSRGGTLNIIIQPEPPVLVTALNQQQPTLT 56 MNRREFTK L GAA IP GITRA GQ+RGGTLN IIQPEPP+LVTALNQQQPTLT Sbjct: 1 MNRREFTKLGLLAGAAGIGGIPLGITRAVGQTRGGTLNTIIQPEPPILVTALNQQQPTLT 60 Query: 57 LGGKIYEGLLKYGADLKPMPGMAQSWEVSPDGLTYTFKLFPGITFHDGKPMTSEDVVFSC 116 LGGKIYE LL+Y DLKP+PG+AQSWEVSPD LTYTFKL P ITFHDG P+TSEDVVFS Sbjct: 61 LGGKIYESLLRYDFDLKPLPGLAQSWEVSPDKLTYTFKLHPNITFHDGAPLTSEDVVFSI 120 Query: 117 MKLLVETHPRARQNFARVASAEAPDPLTVVFKLKQPFAPFIGCFDCTSAPIVPKHIYDGT 176 MK+L+E H RAR F+RV AEAPDPLTVVFKLK PFAPF+ FDCT+APIVPKHIY+GT Sbjct: 121 MKVLIENHARARNTFSRVEKAEAPDPLTVVFKLKAPFAPFLTAFDCTTAPIVPKHIYEGT 180 Query: 177 DYRKNPENDKAIGTGPFKLKEWVRGSHVHLVRHDGYYQKDQPYLDEIVYRVIPDAASRAL 236 DYRKNP N KAIG+GPFKLKEWVRGSHVHLV+H+GYY+ +P LDEI+YRVIPD+ASR++ Sbjct: 181 DYRKNPANAKAIGSGPFKLKEWVRGSHVHLVKHEGYYRPGEPVLDEIIYRVIPDSASRSV 240 Query: 237 ALENGTVQLVQWSDVEFYDVQRFKAQKNLEFTTKGYEYFAPHQWLEMNNRIAPMNDKRFR 296 ALE GTVQL QW+DVE ++V R +L TTKGYE+FAPH WLE N RIAPMNDKRFR Sbjct: 241 ALEQGTVQLTQWTDVELFEVPRLSKLPHLTMTTKGYEFFAPHTWLEFNTRIAPMNDKRFR 300 Query: 297 QAVMHLIDREAFSKRVYFGNAKVATGPISSKTRFYDPNVKRYEFSVDKAKALLDDMGLKP 356 QAVM+ IDR+A R+YFG KVATGP+SSKT+FY+ NVK Y+FS +KAKALLD+MGLKP Sbjct: 301 QAVMYAIDRKALLARIYFGLGKVATGPVSSKTKFYEKNVKAYDFSPEKAKALLDEMGLKP 360 Query: 357 GANGKRAEIKYIVPPYGESYQRAGEFFRQSFARVGIDLVLVGTDMAGWAEKVGNWDYEMT 416 GA+GKR I Y+VPPYGE++QR EF RQS ARVGIDL L G D+AGWAEK NWD+ MT Sbjct: 361 GADGKRVTIPYLVPPYGETHQRTSEFIRQSLARVGIDLQLQGIDVAGWAEKFSNWDFSMT 420 Query: 417 QNLLYQLGDPALGVARTYISSNIKKGILFSNTQGYSNPEVDKLFDEAAVTLDEAKRQELY 476 +YQ GDPALGV+R+Y+SSNI+KGILFSNT GYSNPEVD+LF+EAAV + KRQE Y Sbjct: 421 ATTVYQFGDPALGVSRSYVSSNIRKGILFSNTCGYSNPEVDRLFEEAAVATSDDKRQEFY 480 Query: 477 SKVQQILVEDVPVAWTLEIEYPIIYDKAFKNIVTTGIGSHETFGSV 522 S+VQ+I+VEDVPVAW LEI+YP DK KN+VTT IG H+TFG+V Sbjct: 481 SEVQKIMVEDVPVAWLLEIDYPNFMDKRLKNVVTTAIGVHDTFGTV 526 >ref|NP_947672.1| putative ABC transporter oligopeptide-binding protein [Rhodopseudomonas palustris CGA009] ref|YP_001991559.1| family 5 extracellular solute-binding protein [Rhodopseudomonas palustris TIE-1] emb|CAE27768.1| putative ABC transporter oligopeptide-binding protein [Rhodopseudomonas palustris CGA009] gb|ACF01084.1| extracellular solute-binding protein family 5 [Rhodopseudomonas palustris TIE-1] Length = 529 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/526 (70%), Positives = 438/526 (83%), Gaps = 4/526 (0%) Query: 1 MNRREFTKAMLACGA----AIPFGITRAAGQSRGGTLNIIIQPEPPVLVTALNQQQPTLT 56 MNRREF K L GA IP GITRAAGQ+RGGTLN IIQPEPP+LVTALNQQQPTLT Sbjct: 1 MNRREFAKLGLMAGALGIGGIPLGITRAAGQTRGGTLNTIIQPEPPILVTALNQQQPTLT 60 Query: 57 LGGKIYEGLLKYGADLKPMPGMAQSWEVSPDGLTYTFKLFPGITFHDGKPMTSEDVVFSC 116 LGGKIYE LL+Y DLKP+PG+AQSWEVSPD LTYTFKLFP ITFHDG P+TSEDVVFS Sbjct: 61 LGGKIYESLLRYDFDLKPLPGLAQSWEVSPDKLTYTFKLFPNITFHDGTPLTSEDVVFSI 120 Query: 117 MKLLVETHPRARQNFARVASAEAPDPLTVVFKLKQPFAPFIGCFDCTSAPIVPKHIYDGT 176 K+L+E H RAR F+R+ AEAPDPLTVVF LK+PFAPF+ FDCT+APIVPKHIYDGT Sbjct: 121 TKILMENHARARNTFSRIDKAEAPDPLTVVFTLKKPFAPFLTAFDCTTAPIVPKHIYDGT 180 Query: 177 DYRKNPENDKAIGTGPFKLKEWVRGSHVHLVRHDGYYQKDQPYLDEIVYRVIPDAASRAL 236 DYRKNP N KAIG+GPFKLKEWVRGSHVHLV+H+GYY+ +P LDEI+YRVIPD+ASR++ Sbjct: 181 DYRKNPANAKAIGSGPFKLKEWVRGSHVHLVKHEGYYRPGEPVLDEIIYRVIPDSASRSV 240 Query: 237 ALENGTVQLVQWSDVEFYDVQRFKAQKNLEFTTKGYEYFAPHQWLEMNNRIAPMNDKRFR 296 ALE GTVQL QW+DVE ++V R +L TTKGYE+FAPH WLE+NNRIAPMNDKRFR Sbjct: 241 ALEQGTVQLTQWTDVELFEVPRLSKLPHLTMTTKGYEFFAPHTWLEINNRIAPMNDKRFR 300 Query: 297 QAVMHLIDREAFSKRVYFGNAKVATGPISSKTRFYDPNVKRYEFSVDKAKALLDDMGLKP 356 QAVM+ IDR+A R+YFG KVATGP+SSKT+FY+ +VK+Y+FS +KAKALLD+MGLKP Sbjct: 301 QAVMYAIDRKALLNRIYFGLGKVATGPVSSKTKFYEKDVKKYDFSPEKAKALLDEMGLKP 360 Query: 357 GANGKRAEIKYIVPPYGESYQRAGEFFRQSFARVGIDLVLVGTDMAGWAEKVGNWDYEMT 416 G +GKR I ++VPPYGE++QR EF RQS ARVGIDL L G D+AGWAEK NWD+ MT Sbjct: 361 GPDGKRVTIPFLVPPYGETHQRTAEFLRQSLARVGIDLQLQGIDVAGWAEKFSNWDFSMT 420 Query: 417 QNLLYQLGDPALGVARTYISSNIKKGILFSNTQGYSNPEVDKLFDEAAVTLDEAKRQELY 476 +YQ GDPALGV+R+Y+SSNI+KGILFSNT GYSNPEVD+LF+EAA + KRQE Y Sbjct: 421 TTTVYQFGDPALGVSRSYVSSNIRKGILFSNTCGYSNPEVDRLFEEAATATSDDKRQEHY 480 Query: 477 SKVQQILVEDVPVAWTLEIEYPIIYDKAFKNIVTTGIGSHETFGSV 522 S +Q+I+V++VPV W LEI+YP + DK KN+VT+ IG H+TFG+V Sbjct: 481 SALQKIMVDEVPVIWLLEIDYPNLMDKRLKNVVTSAIGVHDTFGTV 526 >ref|YP_003451535.1| peptide/nickel transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI74991.1| peptide/nickel transport system substrate-binding protein [Azospirillum sp. B510] Length = 543 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 290/495 (58%), Positives = 375/495 (75%) Query: 29 RGGTLNIIIQPEPPVLVTALNQQQPTLTLGGKIYEGLLKYGADLKPMPGMAQSWEVSPDG 88 RGG LN I+QPEPP L+ LNQQ PT T+ GKIY+GLL Y L P+P +A+SW VSPDG Sbjct: 46 RGGVLNSIVQPEPPTLMLGLNQQGPTQTVAGKIYQGLLTYDRKLNPLPSLAESWTVSPDG 105 Query: 89 LTYTFKLFPGITFHDGKPMTSEDVVFSCMKLLVETHPRARQNFARVASAEAPDPLTVVFK 148 LTYTFKL+ + +HDGKP ++ DVVFS K L+E HPRAR F+R S +A D TV FK Sbjct: 106 LTYTFKLYQNVKWHDGKPFSAADVVFSTSKFLMEVHPRARAVFSRCESIKALDDHTVEFK 165 Query: 149 LKQPFAPFIGCFDCTSAPIVPKHIYDGTDYRKNPENDKAIGTGPFKLKEWVRGSHVHLVR 208 LK+PF FI F+ +SAPIVP HIY+G DYR NP N IGTGPFKLKEWV+GS++ LVR Sbjct: 166 LKEPFPAFIQAFEVSSAPIVPAHIYEGGDYRTNPANTTPIGTGPFKLKEWVKGSYIQLVR 225 Query: 209 HDGYYQKDQPYLDEIVYRVIPDAASRALALENGTVQLVQWSDVEFYDVQRFKAQKNLEFT 268 ++ YY+KD PYLD I +RVIPDAASR+LALE+G VQ Q+SD+E ++V R K N+ T Sbjct: 226 NEDYYKKDLPYLDGITFRVIPDAASRSLALESGQVQQTQYSDLEPFEVPRLKTLPNVTLT 285 Query: 269 TKGYEYFAPHQWLEMNNRIAPMNDKRFRQAVMHLIDREAFSKRVYFGNAKVATGPISSKT 328 T+GYE+ AP WLE+N+R+ P++DKRFR+A+ + IDR+ +++FG +V TGPI+S Sbjct: 286 TQGYEFVAPMAWLEINHRVKPLDDKRFRKAIAYAIDRKFIRDKIWFGLGRVPTGPINSVV 345 Query: 329 RFYDPNVKRYEFSVDKAKALLDDMGLKPGANGKRAEIKYIVPPYGESYQRAGEFFRQSFA 388 +FYDP V YE S +KAKALLD+MGLKP A G RA +K + PYGE++ R GE+ +Q+ Sbjct: 346 KFYDPKVTTYEPSPEKAKALLDEMGLKPDAKGVRATVKLMPMPYGETWTRLGEYLKQALG 405 Query: 389 RVGIDLVLVGTDMAGWAEKVGNWDYEMTQNLLYQLGDPALGVARTYISSNIKKGILFSNT 448 +VG+ +VL TD AGWA++V NWDYE+T N LYQ GDPALGVARTYISSNI+KG+LF+NT Sbjct: 406 KVGVAVVLESTDAAGWAQRVANWDYEITTNFLYQYGDPALGVARTYISSNIRKGVLFTNT 465 Query: 449 QGYSNPEVDKLFDEAAVTLDEAKRQELYSKVQQILVEDVPVAWTLEIEYPIIYDKAFKNI 508 GYSNP+VD+LFD+A+ D AKRQE YS+VQ+IL +++PV W LE+E+P DK +N Sbjct: 466 MGYSNPKVDELFDQASRENDPAKRQEQYSEVQRILSDELPVVWLLEMEFPTFLDKRVRNA 525 Query: 509 VTTGIGSHETFGSVY 523 T+ IG ++T+ SV+ Sbjct: 526 NTSAIGVNDTYESVW 540