BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0206.0021.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770603.1| transcriptional regulator [Bradyrhizobium japon...   201   2e-50
ref|YP_002289455.1| transcriptional regulatory protein [Oligotro...   201   3e-50
ref|ZP_07026849.1| transcriptional regulator, LysR family [Afipi...   192   2e-47
ref|NP_103648.1| transcriptional regulator [Mesorhizobium loti M...   131   3e-29
ref|ZP_02364474.1| transcriptional regulator, LysR family protei...   122   2e-26

>ref|NP_770603.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49228.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 300

 Score =  201 bits (512), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 111/131 (84%)

Query: 1   VFVVARDMKTPKSVDLEWLSRTGWVINQDGCGFRQTLKRHFDAAHLPFNIAVEALDSELR 60
           VFVVARDMK P+ VDLE LS+  WVINQDGCGFR +LKR FDA HLPF+IAVEALDSELR
Sbjct: 168 VFVVARDMKIPRIVDLERLSQLSWVINQDGCGFRDSLKRKFDAEHLPFSIAVEALDSELR 227

Query: 61  LSLVARGLGIGLVTPVALKRSPIRSRLKAVKIADFNPAVRAWIVHRPPAGRLARPIEVFR 120
           LSLV+RGLG+GLVTP+ALKRS  R +LK V   DF PAVRAWIVHR PAGRL RPI++FR
Sbjct: 228 LSLVSRGLGVGLVTPIALKRSAFRDKLKPVVARDFKPAVRAWIVHRAPAGRLERPIKLFR 287

Query: 121 AALDRELQALM 131
             LDRELQA++
Sbjct: 288 DGLDRELQAMI 298


>ref|YP_002289455.1| transcriptional regulatory protein [Oligotropha carboxidovorans
           OM5]
 ref|YP_004632531.1| LysR family transcriptional regulator [Oligotropha carboxidovorans
           OM5]
 gb|ACI93590.1| transcriptional regulatory protein [Oligotropha carboxidovorans
           OM5]
 gb|AEI02714.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM4]
 gb|AEI06290.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 298

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 109/128 (85%)

Query: 1   VFVVARDMKTPKSVDLEWLSRTGWVINQDGCGFRQTLKRHFDAAHLPFNIAVEALDSELR 60
            FVVARDMK PKSVDL  LS   WVINQDGCGFR+ LKR FDAAHLPFNIAVEALD ELR
Sbjct: 168 TFVVARDMKVPKSVDLPGLSHLPWVINQDGCGFRRALKRRFDAAHLPFNIAVEALDPELR 227

Query: 61  LSLVARGLGIGLVTPVALKRSPIRSRLKAVKIADFNPAVRAWIVHRPPAGRLARPIEVFR 120
           LSLVARG+GIGLVTP+ALKRSP+RS+LK VK+ +F PAVRAW+VHRPP GRLA PI+ FR
Sbjct: 228 LSLVARGVGIGLVTPIALKRSPLRSKLKVVKVENFEPAVRAWVVHRPPPGRLAVPIKAFR 287

Query: 121 AALDRELQ 128
            AL  EL+
Sbjct: 288 DALAVELR 295


>ref|ZP_07026849.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gb|EFI51692.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 298

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 104/128 (81%)

Query: 1   VFVVARDMKTPKSVDLEWLSRTGWVINQDGCGFRQTLKRHFDAAHLPFNIAVEALDSELR 60
           +FVV RDMK PK++ L  LSR  WVIN DGCGFR+ LKR FDAAHLPF IAVEA+D ELR
Sbjct: 168 IFVVPRDMKVPKTIGLPDLSRLPWVINHDGCGFRRALKRRFDAAHLPFQIAVEAIDPELR 227

Query: 61  LSLVARGLGIGLVTPVALKRSPIRSRLKAVKIADFNPAVRAWIVHRPPAGRLARPIEVFR 120
           LSLVARG+GIGL TP ALKRSP RS+LK VK+ +F PAVRAW+VHRPPAGRLA PIE FR
Sbjct: 228 LSLVARGMGIGLATPAALKRSPFRSKLKIVKVENFEPAVRAWVVHRPPAGRLAAPIEAFR 287

Query: 121 AALDRELQ 128
            AL  EL 
Sbjct: 288 DALALELH 295


>ref|NP_103648.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 dbj|BAB49434.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 304

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 87/131 (66%)

Query: 1   VFVVARDMKTPKSVDLEWLSRTGWVINQDGCGFRQTLKRHFDAAHLPFNIAVEALDSELR 60
           + V +  +  P    L  LSR  WV+N++GCGFR  +++ F+AA LPF + VEAL  +LR
Sbjct: 170 LLVASPSLGVPNPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLR 229

Query: 61  LSLVARGLGIGLVTPVALKRSPIRSRLKAVKIADFNPAVRAWIVHRPPAGRLARPIEVFR 120
           +SLVARG GIG+VTP A   S  R +++ +   DF P VRAW++HRPPAGRLA PI +FR
Sbjct: 230 MSLVARGHGIGIVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFR 289

Query: 121 AALDRELQALM 131
            AL   L+  M
Sbjct: 290 DALIDGLKVPM 300


>ref|ZP_02364474.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 312

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 1   VFVVARDMKTPKS-VDLEWLSRTGWVINQDGCGFRQTLKRHFDAAHLPFNIAVEALDSEL 59
           V V ARD   P   V L+ LSR  WV++QDGCG R  L R F AA LPF++AVEA  S+L
Sbjct: 168 VLVAARDFALPPGPVPLDALSRYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDL 227

Query: 60  RLSLVARGLGIGLVTPVALKRSPIRSRLKAVKIADFNPAVRAWIVHRPPAGRLARPIEVF 119
           +LSLVARG G+G+ +  AL RSP R  L+ V   D  P +  W+VH    GRL RP+E+ 
Sbjct: 228 QLSLVARGAGLGIASTAALARSPHRDALQVVGTVDVEPGISVWLVHGVLPGRLMRPVELL 287

Query: 120 RAALDRELQA 129
           R  L   L+A
Sbjct: 288 RERLAAVLEA 297