BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0206.0018.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770601.1| hypothetical protein blr3961 [Bradyrhizobium ja... 634 e-180 ref|YP_577795.1| HI0933-like protein [Nitrobacter hamburgensis X... 589 e-166 ref|YP_001205177.1| putative signal peptide [Bradyrhizobium sp. ... 581 e-164 ref|YP_532948.1| hypothetical protein RPC_3087 [Rhodopseudomonas... 559 e-157 ref|YP_569387.1| hypothetical protein RPD_2251 [Rhodopseudomonas... 551 e-155 >ref|NP_770601.1| hypothetical protein blr3961 [Bradyrhizobium japonicum USDA 110] dbj|BAC49226.1| blr3961 [Bradyrhizobium japonicum USDA 110] Length = 410 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 313/401 (78%), Positives = 352/401 (87%) Query: 3 VAVIGAGPAGLMAAEVLAQGGAQVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPDFLARY 62 VA+IGAGPAGLMAAEVLAQGGA+VTVYDAMPSAGRKFLMAGRGGLNLTHSEPLP F+ RY Sbjct: 8 VAIIGAGPAGLMAAEVLAQGGARVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPQFMPRY 67 Query: 63 REAVLRLKAAVEAFPPDALRAWSDVLGQPTFVGSSGRVFPKAFKASPLLRAWLRRLDAAG 122 REA +L+AA+EAFPPDALRAWS LG+PTFVG+SGRVFP+AFKASPLLRAWLRRLDA+G Sbjct: 68 REAAAKLQAAIEAFPPDALRAWSAALGEPTFVGTSGRVFPRAFKASPLLRAWLRRLDASG 127 Query: 123 VAFALRHRWVGWDARGGLLFETQDGQRTVNADATVLALGGASWPRLGSDGAWADILAAKG 182 V FA RHRW GWD LLF+T+ G V ADATVLALGGASWPRLGSDG W DILAA G Sbjct: 128 VRFAFRHRWTGWDGEERLLFQTRSGTSVVAADATVLALGGASWPRLGSDGGWVDILAANG 187 Query: 183 IAVTPIKPANSGFTVAWSNIFRDRFEGQPLKGVDLTIGLHTMRGEAIVTRSGIEGGAIYA 242 I ++ ++PANSGFTVAWS +FRDRFEGQPLKGV LTIG HT+RGEA++TR GIEGGAIYA Sbjct: 188 ITISKLRPANSGFTVAWSELFRDRFEGQPLKGVALTIGAHTVRGEAMITRGGIEGGAIYA 247 Query: 243 LSAELREAVLANGTAMLSVALRPDVAGDELVARLSAPKGKQSFSNFLRKAAQLSPVGIGL 302 LSAELREAVL G AML++ALRPD+A L RLS +GKQS +NFLRKAAQ+SPVGIGL Sbjct: 248 LSAELREAVLGIGQAMLTIALRPDLAAAALTTRLSGTRGKQSLANFLRKAAQVSPVGIGL 307 Query: 303 LQEAAVASGRSLAALPPAELAELINAVPIKVSGVAPIARAISSAGGIRFDELDAHFMLRR 362 +QEAA+ASGR LA+ PAELA LINA+P++++GVAPI RAIS+AGG+ FDELDA FM+R+ Sbjct: 308 MQEAAIASGRPLASFSPAELAHLINAIPVQLTGVAPIDRAISTAGGVSFDELDADFMIRK 367 Query: 363 LPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGKGVLNWLN 403 LPGVFAAGEMLDWEAPTGGYLLQASFATG AAG+GVL L Sbjct: 368 LPGVFAAGEMLDWEAPTGGYLLQASFATGAAAGRGVLGCLK 408 >ref|YP_577795.1| HI0933-like protein [Nitrobacter hamburgensis X14] gb|ABE63335.1| HI0933-like protein [Nitrobacter hamburgensis X14] Length = 409 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 295/401 (73%), Positives = 337/401 (84%) Query: 3 VAVIGAGPAGLMAAEVLAQGGAQVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPDFLARY 62 VAV+GAGPAGLMAAEVLA+GG +VTV+DAMPSAGRKFLMAGRGGLNLTHSEPLP FLARY Sbjct: 8 VAVLGAGPAGLMAAEVLARGGVRVTVFDAMPSAGRKFLMAGRGGLNLTHSEPLPQFLARY 67 Query: 63 REAVLRLKAAVEAFPPDALRAWSDVLGQPTFVGSSGRVFPKAFKASPLLRAWLRRLDAAG 122 A LK A++AF P+ALR W+D LGQPTFVGSSGRVFPK KASPLLRAWLRRLD+ Sbjct: 68 GAAAPHLKPAIDAFTPEALRKWADDLGQPTFVGSSGRVFPKTLKASPLLRAWLRRLDSLS 127 Query: 123 VAFALRHRWVGWDARGGLLFETQDGQRTVNADATVLALGGASWPRLGSDGAWADILAAKG 182 V ALRHRW GWD G LLF+T DG+RT A +TVLALGGASWPRLGSDGAW + LA +G Sbjct: 128 VTLALRHRWTGWDRDGRLLFQTPDGERTFEAASTVLALGGASWPRLGSDGAWVEWLAGRG 187 Query: 183 IAVTPIKPANSGFTVAWSNIFRDRFEGQPLKGVDLTIGLHTMRGEAIVTRSGIEGGAIYA 242 +AV P++PANSGFTV WS +FRDRFEGQPLK V L++G H +RGEA++TR+G+EGG IYA Sbjct: 188 VAVAPLRPANSGFTVGWSGVFRDRFEGQPLKNVALSVGSHAVRGEAVITRTGVEGGGIYA 247 Query: 243 LSAELREAVLANGTAMLSVALRPDVAGDELVARLSAPKGKQSFSNFLRKAAQLSPVGIGL 302 LS+ LREA++A+G A L + LRPDV D L ARLSAP+GKQS SN+LRKAA L+PV IG+ Sbjct: 248 LSSVLREAIIASGRATLHINLRPDVTTDNLSARLSAPRGKQSVSNWLRKAAGLAPVAIGV 307 Query: 303 LQEAAVASGRSLAALPPAELAELINAVPIKVSGVAPIARAISSAGGIRFDELDAHFMLRR 362 LQE A+ASG+ +PPA LA LI+AVPI ++GVAPIARAISSAGGI F ELD M+RR Sbjct: 308 LQEMAMASGQQPGTMPPAALAALIHAVPITLTGVAPIARAISSAGGIAFSELDGDCMIRR 367 Query: 363 LPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGKGVLNWLN 403 LPGVFAAGEMLDWEAPTGGYLLQASFATG AAG+GVL WL Sbjct: 368 LPGVFAAGEMLDWEAPTGGYLLQASFATGAAAGRGVLKWLR 408 >ref|YP_001205177.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL76942.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 408 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 291/402 (72%), Positives = 331/402 (82%) Query: 3 VAVIGAGPAGLMAAEVLAQGGAQVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPDFLARY 62 +AV+GAGPAGLMAAEVLA GGA VTVYDAMPS RKFLMAGRGGLNLTHSE L FLARY Sbjct: 7 IAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELEAFLARY 66 Query: 63 REAVLRLKAAVEAFPPDALRAWSDVLGQPTFVGSSGRVFPKAFKASPLLRAWLRRLDAAG 122 REA L AV+ F P LR W + LGQPTFVGSSGRVFP A KASPLLRAWLRRLDA G Sbjct: 67 REAADWLAPAVQGFAPQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLRRLDAHG 126 Query: 123 VAFALRHRWVGWDARGGLLFETQDGQRTVNADATVLALGGASWPRLGSDGAWADILAAKG 182 LRHRW GWD +G L+F+T +G R + A+ATVLALGGASWPRLGSDG W ILAA+G Sbjct: 127 ARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEATVLALGGASWPRLGSDGGWVSILAARG 186 Query: 183 IAVTPIKPANSGFTVAWSNIFRDRFEGQPLKGVDLTIGLHTMRGEAIVTRSGIEGGAIYA 242 +A+ P++P+N GF+V WS+IFRDRFEG PLKG+ L+ G ++RGEA+VTR GIEGGA+YA Sbjct: 187 VAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIEGGAVYA 246 Query: 243 LSAELREAVLANGTAMLSVALRPDVAGDELVARLSAPKGKQSFSNFLRKAAQLSPVGIGL 302 LSAELREA+ NG +L VALRPD+ +L+ RLSAP+GKQSFSN LRK QLSPV IGL Sbjct: 247 LSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLSPVAIGL 306 Query: 303 LQEAAVASGRSLAALPPAELAELINAVPIKVSGVAPIARAISSAGGIRFDELDAHFMLRR 362 LQEAA G+SL++LPP LA L+N VPIK++G+A +ARAISSAGGI DELDA +MLRR Sbjct: 307 LQEAAKTQGQSLSSLPPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDADYMLRR 366 Query: 363 LPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGKGVLNWLNS 404 LPGVFAAGEMLDWEAPTGGYLLQASFATGVAAG+GVL WL S Sbjct: 367 LPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGRGVLKWLKS 408 >ref|YP_532948.1| hypothetical protein RPC_3087 [Rhodopseudomonas palustris BisB18] gb|ABD88629.1| HI0933-like protein [Rhodopseudomonas palustris BisB18] Length = 409 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 288/402 (71%), Positives = 337/402 (83%) Query: 2 TVAVIGAGPAGLMAAEVLAQGGAQVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPDFLAR 61 +VA+IGAGPAGLMAAEV+AQGGA+VTVYD M SAGRKFL+AGRGGLNLTHSEPLP FL+R Sbjct: 7 SVAIIGAGPAGLMAAEVIAQGGARVTVYDGMASAGRKFLLAGRGGLNLTHSEPLPQFLSR 66 Query: 62 YREAVLRLKAAVEAFPPDALRAWSDVLGQPTFVGSSGRVFPKAFKASPLLRAWLRRLDAA 121 Y A+ L+ A+EA PD LR WS LGQPTF+GSSGRVFP A KASPLLRAWLRRLD+ Sbjct: 67 YGAALPHLRGAIEALSPDVLRDWSAALGQPTFIGSSGRVFPTALKASPLLRAWLRRLDSQ 126 Query: 122 GVAFALRHRWVGWDARGGLLFETQDGQRTVNADATVLALGGASWPRLGSDGAWADILAAK 181 GV LRHRW GW G L F T DG+RTV A A+VLALGGASWP+LGSDG W LAAK Sbjct: 127 GVELKLRHRWQGWGDDGALRFATPDGERTVQAQASVLALGGASWPKLGSDGGWVGTLAAK 186 Query: 182 GIAVTPIKPANSGFTVAWSNIFRDRFEGQPLKGVDLTIGLHTMRGEAIVTRSGIEGGAIY 241 G+A+ P++PAN GFTVAWS IFRDR+EGQPLK V L+ G +RGEA++T+SGIEGGA+Y Sbjct: 187 GVAIAPLQPANGGFTVAWSQIFRDRYEGQPLKTVALSFGGRVVRGEAMITKSGIEGGAVY 246 Query: 242 ALSAELREAVLANGTAMLSVALRPDVAGDELVARLSAPKGKQSFSNFLRKAAQLSPVGIG 301 ALSA LR+A+LA+G A L VALRPDV+ ++L ARL+AP+GK S +NFLRKAA L+P+G+G Sbjct: 247 ALSAALRDAILADGEATLHVALRPDVSHEDLSARLAAPRGKASLTNFLRKAAHLTPLGVG 306 Query: 302 LLQEAAVASGRSLAALPPAELAELINAVPIKVSGVAPIARAISSAGGIRFDELDAHFMLR 361 LLQEAA+A G +L+ L PAELA LINAVPI+++G+ PIARAIS+AGGI F ELDA FMLR Sbjct: 307 LLQEAAIAQGVALSTLTPAELAALINAVPIRLNGLEPIARAISTAGGIAFSELDADFMLR 366 Query: 362 RLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGKGVLNWLN 403 +LPGVFAAGEMLDWEAPTGGYLLQ +FATG AAG+GVL +L Sbjct: 367 KLPGVFAAGEMLDWEAPTGGYLLQGAFATGAAAGRGVLRFLR 408 >ref|YP_569387.1| hypothetical protein RPD_2251 [Rhodopseudomonas palustris BisB5] gb|ABE39486.1| HI0933-like protein [Rhodopseudomonas palustris BisB5] Length = 414 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 286/405 (70%), Positives = 331/405 (81%) Query: 1 MTVAVIGAGPAGLMAAEVLAQGGAQVTVYDAMPSAGRKFLMAGRGGLNLTHSEPLPDFLA 60 + VAVIGAGPAGLMAAEV A+GGA+VTV+D M SA RKFL+AGRGGLNLTHSEPL D L Sbjct: 7 IDVAVIGAGPAGLMAAEVAAKGGARVTVFDGMSSAARKFLLAGRGGLNLTHSEPLADVLE 66 Query: 61 RYREAVLRLKAAVEAFPPDALRAWSDVLGQPTFVGSSGRVFPKAFKASPLLRAWLRRLDA 120 RY A RL+ A+EAFPPDALR W++ LGQPTFVGSSGRVFP KASPLLRAWLRRLDA Sbjct: 67 RYGAAQQRLRPAIEAFPPDALRGWAEELGQPTFVGSSGRVFPVTMKASPLLRAWLRRLDA 126 Query: 121 AGVAFALRHRWVGWDARGGLLFETQDGQRTVNADATVLALGGASWPRLGSDGAWADILAA 180 GV LRHRW GWD G LLF+T DG R + A ATVLALGGASWP+LGSDG + D+LAA Sbjct: 127 QGVQLKLRHRWTGWDDNGRLLFDTFDGPRAIAARATVLALGGASWPKLGSDGGFVDLLAA 186 Query: 181 KGIAVTPIKPANSGFTVAWSNIFRDRFEGQPLKGVDLTIGLHTMRGEAIVTRSGIEGGAI 240 KGIA+ P+KPAN GFTV WS +F ++++G PLK + L+ G +RGEAIVTR+G+EGGA+ Sbjct: 187 KGIAIAPLKPANCGFTVDWSELFAEKYQGTPLKNIALSCGGRAIRGEAIVTRTGLEGGAV 246 Query: 241 YALSAELREAVLANGTAMLSVALRPDVAGDELVARLSAPKGKQSFSNFLRKAAQLSPVGI 300 YALSA LR+A+LA+G A L +ALRPD++ DEL +RL+ PKGKQS S FLRKAA L P GI Sbjct: 247 YALSAGLRDAILADGEATLMIALRPDLSADELTSRLTKPKGKQSLSTFLRKAAGLPPAGI 306 Query: 301 GLLQEAAVASGRSLAALPPAELAELINAVPIKVSGVAPIARAISSAGGIRFDELDAHFML 360 GLLQEAA GRSLA+LPPAE A LINAVP++++G+APIARAIS+AGGI F ELD ML Sbjct: 307 GLLQEAAHRQGRSLASLPPAECAALINAVPVRLTGIAPIARAISTAGGIAFAELDDTSML 366 Query: 361 RRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGKGVLNWLNSQ 405 R+LPGVFAAGEMLDWEAPTGGYLL A FATG AAG+G L WL + Sbjct: 367 RKLPGVFAAGEMLDWEAPTGGYLLTACFATGAAAGRGALAWLGRK 411