BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0206.0006.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241884.1| putative sensor histidine kinase [Bradyrhizo... 629 e-178 ref|NP_949858.1| sensor histidine kinase [Rhodopseudomonas palus... 575 e-162 ref|YP_004111008.1| integral membrane sensor signal transduction... 569 e-160 ref|YP_001772328.1| integral membrane sensor signal transduction... 512 e-143 ref|YP_002963791.1| integral membrane sensor signal transduction... 509 e-142 >ref|YP_001241884.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ37978.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 483 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 321/458 (70%), Positives = 375/458 (81%), Gaps = 2/458 (0%) Query: 12 FDDLVEERRFVDQYVRGNIGWTQVAMLLGAFTYAGYAFWDWVLYPDVVATTLAIRGGIAV 71 F+D VEERRFVD YVRG+ GWTQ+AM+LGAFT+AGY WDWVLYP++V TTLAIRGG AV Sbjct: 12 FEDAVEERRFVDHYVRGSTGWTQIAMVLGAFTFAGYTLWDWVLYPEIVPTTLAIRGGTAV 71 Query: 72 LVLLPLTALLSVRAMKPWAETIFLVYCVIPGCVLPSVYLVLPSGFTYAAPGMIMVILFVS 131 LVLLPLTALLS A K WAE I L+YCVIPGCVLP++Y VLPSGFTY+A GMI+VILFVS Sbjct: 72 LVLLPLTALLSTPARK-WAEPIHLLYCVIPGCVLPTIYWVLPSGFTYSAAGMIIVILFVS 130 Query: 132 TMLPLRIGPLAVFCLTTWIALCTAESLG-PALPPGLRFINHSLVINAYALSLYAVAAREF 190 TMLPLRIG A FC T+W AL AESL LPPGLRFI+HSLV NA LSLYAV ARE+ Sbjct: 131 TMLPLRIGSYATFCATSWSALAVAESLAAEPLPPGLRFIDHSLVGNACLLSLYAVGAREY 190 Query: 191 RARQQFRTAQALKQEKERSEASLRDLHATQSHLVQAEKLASLGQLVAGVAHEVSTPLGLA 250 +AR+QFRTA+AL++EKERSEASLRDLHATQ+HLVQAEKLASLGQLVAGV HEVSTPLGLA Sbjct: 191 QARKQFRTAEALQREKERSEASLRDLHATQAHLVQAEKLASLGQLVAGVGHEVSTPLGLA 250 Query: 251 LTTSTTMEADLRAMSEALNGTAVRRSDLTRGIARIGNGLRLTSENLHRASEMVHSFKQVA 310 LTTST ME D++ ++ L G VRRSDL +G+AR+ GL+LT+++LHRASEMVHSFKQVA Sbjct: 251 LTTSTAMEGDVQTIARMLGGGLVRRSDLAKGVARLQEGLQLTTQSLHRASEMVHSFKQVA 310 Query: 311 IHHADEERHTFELGGWLSDLISKLGPLLSRQGLVVEVTCPQGIILNSYPGALAQVISNLA 370 + A+E H FEL GW++D I+KL PLL+RQGL V ++CP+GI+L SYPGAL QVIS LA Sbjct: 311 VDQANEALHRFELQGWMADHIAKLRPLLARQGLTVALSCPEGIVLTSYPGALGQVISILA 370 Query: 371 FNAAAHAYPDGGGGRFTMTVTQPDQALARIACADQGVGIREDLQARVFDPFFTTGRERGN 430 FNAA HAYP G FT+ V P + RI CAD GVG+ ++ RVFDPFFTT RE+GN Sbjct: 371 FNAATHAYPGEVSGLFTVEVAPPADGVVRILCADHGVGMPGHVRGRVFDPFFTTRREKGN 430 Query: 431 IGLGLHIAFNTVVSSLSGRIALESEPGRGTLVLIEIPV 468 GLGLHIAFN V S+L GRI L+SEP +GT V ++IP+ Sbjct: 431 AGLGLHIAFNLVASTLGGRIELDSEPQQGTRVTLDIPL 468 >ref|NP_949858.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] emb|CAE29964.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] Length = 518 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 305/469 (65%), Positives = 356/469 (75%), Gaps = 7/469 (1%) Query: 4 LLTRLGLRFDDLVEERRFVDQYVRGNIGWTQVAMLLGAFTYAGYAFWDWVLYPDVVATTL 63 LL GLRFDD EERRFVD YVR IGWTQ AM+LGA TYAGY FWDW+LYP+VV TL Sbjct: 53 LLKAAGLRFDDPAEERRFVDSYVRSQIGWTQAAMVLGALTYAGYTFWDWMLYPEVVPITL 112 Query: 64 AIRGGIAVLVLLPLTALLSVRAMKPWAETIFLVYCVIPGCVLPSVYLVLPSGFTYAAPGM 123 AIRGG A+LVLLPLT LL + + WAETI L+YCVIPGCVLPSVYLVLPSGFTYA+ GM Sbjct: 113 AIRGGTALLVLLPLTLLLGM--ARRWAETILLLYCVIPGCVLPSVYLVLPSGFTYASAGM 170 Query: 124 IMVILFVSTMLPLRIGPLAVFCLTTWIALCTAESLGPALPPGLRFINHSLVINAYALSLY 183 I+VILFVSTMLPLRIG L +FC+TTW+A AE L P + PGL FINH L+ N+Y LSLY Sbjct: 171 IIVILFVSTMLPLRIGSLLIFCVTTWLAFAFAERLAPEMSPGLGFINHFLIGNSYLLSLY 230 Query: 184 AVAAREFRARQQFRTAQALKQEKERSEASLRDLHATQSHLVQAEKLASLGQLVAGVAHEV 243 AV ARE RAR+QF T +AL++E RSEASLR+L ATQ+HLVQAEKLA+LGQLVAGV HEV Sbjct: 231 AVGAREHRARRQFATTEALQRETARSEASLRELRATQAHLVQAEKLAALGQLVAGVGHEV 290 Query: 244 STPLGLALTTSTTMEADLRAMSEALNGTAVRRSDLTRGIARIGNGLRLTSENLHRASEMV 303 STP+GLALTTS+ M+AD+R ++ AL G AVRRSDLTRGI R+ GL +T +NL RASEM+ Sbjct: 291 STPIGLALTTSSAMQADVRDLARALEGGAVRRSDLTRGIGRLDQGLGMTQQNLLRASEMI 350 Query: 304 HSFKQVAIHHADEERHTFELGGWLSDLISKLGPLLSRQGLVVEVTCPQGIILNSYPGALA 363 H+FKQVA+ A+E+R FEL GWLS KL PLLSR+GL VE+ P+GI L S PGAL Sbjct: 351 HAFKQVAVDQANEQREGFELRGWLSTSFDKLRPLLSRRGLTVELNVPEGITLISRPGALG 410 Query: 364 QVISNLAFNAAAHAYPDGGGGRFTMTVTQ--PDQALARIACADQGVGIREDLQARVFDPF 421 QV+ LAFNAA HAYP G + + PD+ RI AD GVGI +DL R+FDPF Sbjct: 411 QVLGILAFNAAIHAYPGDAKGVLHVEAARIAPDR--VRITLADDGVGIPDDLAERIFDPF 468 Query: 422 FTTGRERGNIGLGLHIAFNTVVSSLSGRIALESEPGRGTLVLIEIPVSS 470 FTT R+ G+IGLGLHIAFN V S+L G I L +G I++P S Sbjct: 469 FTTKRDGGSIGLGLHIAFNLVASTLGGTIVLIGRE-QGAAFQIDLPTMS 516 >ref|YP_004111008.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gb|ADU46275.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 495 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 303/469 (64%), Positives = 353/469 (75%), Gaps = 7/469 (1%) Query: 4 LLTRLGLRFDDLVEERRFVDQYVRGNIGWTQVAMLLGAFTYAGYAFWDWVLYPDVVATTL 63 LL GLRFDD EERRFVD YVR IGWTQ AM+LGA TYAGY FWDW+LYP+VV TL Sbjct: 30 LLKAAGLRFDDPAEERRFVDSYVRSQIGWTQAAMVLGALTYAGYTFWDWMLYPEVVPITL 89 Query: 64 AIRGGIAVLVLLPLTALLSVRAMKPWAETIFLVYCVIPGCVLPSVYLVLPSGFTYAAPGM 123 AIRGG A+LVLLPLT LL + + WAETI L+YCVIPGCVLPSVYLVLPSGFTYA+ GM Sbjct: 90 AIRGGTALLVLLPLTLLLGM--ARRWAETILLLYCVIPGCVLPSVYLVLPSGFTYASAGM 147 Query: 124 IMVILFVSTMLPLRIGPLAVFCLTTWIALCTAESLGPALPPGLRFINHSLVINAYALSLY 183 I+VILFVSTMLPLRIG L +FC+TTW+A AE L P + PGL FINH L+ N+Y LSLY Sbjct: 148 IIVILFVSTMLPLRIGSLLIFCVTTWLAFAFAERLAPEMSPGLGFINHFLIGNSYLLSLY 207 Query: 184 AVAAREFRARQQFRTAQALKQEKERSEASLRDLHATQSHLVQAEKLASLGQLVAGVAHEV 243 AV ARE RAR+QF T +AL++E RSEASLR+L ATQ+HLVQAEKLA+LGQLVAGV HEV Sbjct: 208 AVGAREHRARRQFATTEALQRETARSEASLRELRATQAHLVQAEKLAALGQLVAGVGHEV 267 Query: 244 STPLGLALTTSTTMEADLRAMSEALNGTAVRRSDLTRGIARIGNGLRLTSENLHRASEMV 303 STP+GLALTTS+ M+AD+R ++ AL G AVRRSDLTRGI R+ GL +T +NL RASEM+ Sbjct: 268 STPIGLALTTSSAMQADVRDLARALEGGAVRRSDLTRGIGRLDEGLGMTQQNLLRASEMI 327 Query: 304 HSFKQVAIHHADEERHTFELGGWLSDLISKLGPLLSRQGLVVEVTCPQGIILNSYPGALA 363 H+FKQVA+ A+E+R FEL GWLS KL PLLSR+GL VE+ P+GI + S PGAL Sbjct: 328 HAFKQVAVDQANEQREGFELRGWLSTSFDKLRPLLSRRGLAVELNVPEGITMISRPGALG 387 Query: 364 QVISNLAFNAAAHAYPDGGGGRFTMTVTQ--PDQALARIACADQGVGIREDLQARVFDPF 421 QV+ LAFNAA HAYP G + + PD+ RI AD GVGI D R+FDPF Sbjct: 388 QVLGILAFNAAIHAYPGDAEGVLHVEAERIAPDR--VRITLADDGVGIPADRAERIFDPF 445 Query: 422 FTTGRERGNIGLGLHIAFNTVVSSLSGRIALESEPGRGTLVLIEIPVSS 470 FTT R+ G+IGLGLHIAFN V S+L G I L G I++P S Sbjct: 446 FTTKRDGGSIGLGLHIAFNLVASTLGGTIELIGRE-HGAAFQIDLPTMS 493 >ref|YP_001772328.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gb|ACA19894.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 506 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 259/469 (55%), Positives = 331/469 (70%) Query: 1 MLRLLTRLGLRFDDLVEERRFVDQYVRGNIGWTQVAMLLGAFTYAGYAFWDWVLYPDVVA 60 M +LL+RLGLRF+ ER FV ++ ++ T+ AMLLGAF Y +A WDW+L P Sbjct: 1 MRKLLSRLGLRFEAPAAERAFVTRFTLDDLPRTRAAMLLGAFIYCAFAVWDWILDPAHWT 60 Query: 61 TTLAIRGGIAVLVLLPLTALLSVRAMKPWAETIFLVYCVIPGCVLPSVYLVLPSGFTYAA 120 TL +R +A+ VLLP TA LS A + WAE I+L YCV+PGCVL +YL L GF +AA Sbjct: 61 ETLFLRLAVALAVLLPATAALSWPAARRWAEEIYLGYCVVPGCVLSLIYLRLGPGFDHAA 120 Query: 121 PGMIMVILFVSTMLPLRIGPLAVFCLTTWIALCTAESLGPALPPGLRFINHSLVINAYAL 180 GMI+VILFVST+LPLR+ LA FC TW+ E+ G+RF+N+ + AYAL Sbjct: 121 AGMIIVILFVSTLLPLRLPSLAAFCGLTWLCFAVCETFAVHERAGMRFVNNFEIGMAYAL 180 Query: 181 SLYAVAAREFRARQQFRTAQALKQEKERSEASLRDLHATQSHLVQAEKLASLGQLVAGVA 240 SLYAV ARE RAR+QFRT +AL++EKERSE +L +L Q+HLVQAEKLA+LGQLVAGVA Sbjct: 181 SLYAVGAREVRARRQFRTEEALRREKERSEMALSELREAQAHLVQAEKLAALGQLVAGVA 240 Query: 241 HEVSTPLGLALTTSTTMEADLRAMSEALNGTAVRRSDLTRGIARIGNGLRLTSENLHRAS 300 HE++TP+GLALTTST E DLR + A+ +RRSDLT+G+AR+ G+RL NL RA+ Sbjct: 241 HEINTPIGLALTTSTAAEGDLRQLQRAVESGQLRRSDLTQGLARLSEGMRLLFSNLTRAA 300 Query: 301 EMVHSFKQVAIHHADEERHTFELGGWLSDLISKLGPLLSRQGLVVEVTCPQGIILNSYPG 360 ++VHSFKQVA+ A EE+ TF+L GWL DL+S LGPL+ R+G V + C GI+L+S+PG Sbjct: 301 DLVHSFKQVAVDQASEEKRTFDLRGWLEDLMSTLGPLVRRKGHAVRIRCEDGIVLDSHPG 360 Query: 361 ALAQVISNLAFNAAAHAYPDGGGGRFTMTVTQPDQALARIACADQGVGIREDLQARVFDP 420 ALAQVISNLA NA H YPDG G + ++ + RI AD G+GI + RVFDP Sbjct: 361 ALAQVISNLALNAIVHGYPDGRSGVLDVAASRSGEDRLRIIVADDGIGIPPEHLGRVFDP 420 Query: 421 FFTTGRERGNIGLGLHIAFNTVVSSLSGRIALESEPGRGTLVLIEIPVS 469 FFTTGR++G+ GLGLHI FN V S+L G+IAL S G G I++P+S Sbjct: 421 FFTTGRDKGSTGLGLHIVFNLVASTLQGQIALSSSEGGGACFTIDLPLS 469 >ref|YP_002963791.1| integral membrane sensor signal transduction histidine kinase precursor [methylobacterium extorquens AM1] gb|ACS40514.1| putative integral membrane sensor signal transduction histidine kinase precursor [Methylobacterium extorquens AM1] Length = 500 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/469 (55%), Positives = 329/469 (70%) Query: 1 MLRLLTRLGLRFDDLVEERRFVDQYVRGNIGWTQVAMLLGAFTYAGYAFWDWVLYPDVVA 60 M LL+RLGLRF+D V+ER FV ++ ++ TQ AMLLGAF Y +A WDW+L P Sbjct: 1 MHTLLSRLGLRFEDPVDERAFVVRFTLDDLFRTQAAMLLGAFVYCAFAVWDWILDPAHWL 60 Query: 61 TTLAIRGGIAVLVLLPLTALLSVRAMKPWAETIFLVYCVIPGCVLPSVYLVLPSGFTYAA 120 TL +R +A VLLP TA LS A +PWAE I+L YCV+PGCVL +YL L F +AA Sbjct: 61 DTLFLRLTVATAVLLPATAALSWPAARPWAEEIYLSYCVVPGCVLSLIYLRLGPSFDHAA 120 Query: 121 PGMIMVILFVSTMLPLRIGPLAVFCLTTWIALCTAESLGPALPPGLRFINHSLVINAYAL 180 G+I+VILFVST+LPLR+ L +FC TW+ E+ PG+RFIN+ + AYAL Sbjct: 121 AGLIIVILFVSTLLPLRLPSLTIFCGLTWLCFVVCEAFAEHEQPGMRFINNFEIGMAYAL 180 Query: 181 SLYAVAAREFRARQQFRTAQALKQEKERSEASLRDLHATQSHLVQAEKLASLGQLVAGVA 240 SLYAV ARE RAR+QF+ +AL++E +RSEA+L +L Q+HLVQAEKLA+L QLVAGVA Sbjct: 181 SLYAVGARELRARRQFQIEEALRRETQRSEAALSELREAQAHLVQAEKLAALSQLVAGVA 240 Query: 241 HEVSTPLGLALTTSTTMEADLRAMSEALNGTAVRRSDLTRGIARIGNGLRLTSENLHRAS 300 HE++TP+GLALTTST + DLR + A+ +RRSDLT+G++R+ GLRL NL RA+ Sbjct: 241 HEINTPIGLALTTSTAADGDLRHLQRAVETGQLRRSDLTQGLSRLSEGLRLLFSNLTRAA 300 Query: 301 EMVHSFKQVAIHHADEERHTFELGGWLSDLISKLGPLLSRQGLVVEVTCPQGIILNSYPG 360 ++VHSFKQVAI A EER TFEL GWL DL+S LGPL R+G + + C GIIL+SYPG Sbjct: 301 DLVHSFKQVAIDQAHEERRTFELHGWLEDLMSTLGPLARRKGHALHIRCEDGIILDSYPG 360 Query: 361 ALAQVISNLAFNAAAHAYPDGGGGRFTMTVTQPDQALARIACADQGVGIREDLQARVFDP 420 ALAQVISNLA NA H YPDG G + ++ ++ I AD GVGI ++ +VFDP Sbjct: 361 ALAQVISNLALNAIVHGYPDGQSGVLDVAASRSSESRLHIIIADDGVGIPQENLRKVFDP 420 Query: 421 FFTTGRERGNIGLGLHIAFNTVVSSLSGRIALESEPGRGTLVLIEIPVS 469 FFTT R G+ GLGLHI FN V S+L G+IAL S RG L I++P+S Sbjct: 421 FFTTRRGMGSTGLGLHIVFNLVTSTLQGQIALSSNRDRGALFTIDLPLS 469