BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0206.0004.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772600.1| hypothetical protein blr5960 [Bradyrhizobium ja...   243   7e-63
ref|YP_380301.1| transporter [Chlorobium chlorochromatii CaD3] >...    49   3e-04
ref|YP_910581.1| major facilitator transporter [Chlorobium phaeo...    49   3e-04
ref|YP_004802360.1| major facilitator superfamily protein [Strep...    48   4e-04
ref|NP_661008.1| transporter, putative [Chlorobium tepidum TLS] ...    48   5e-04

>ref|NP_772600.1| hypothetical protein blr5960 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51225.1| blr5960 [Bradyrhizobium japonicum USDA 110]
          Length = 383

 Score =  243 bits (620), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 134/142 (94%)

Query: 1   VGSLIGSITLSMAGGVRIARLLIGATLAWYAMLLVFVELRTMPVAMACLLFAGIAQSMSM 60
           VGSLIGSITLS+ GG+RIARLLIGATLAWYAMLLVFVE+RTMPVAMACL  AGIAQSMSM
Sbjct: 242 VGSLIGSITLSLVGGLRIARLLIGATLAWYAMLLVFVEIRTMPVAMACLALAGIAQSMSM 301

Query: 61  ISAAVMLMRNASAHLRGRVMGVRMMVIYGLPLGLLAAGSLIDLIGYTATGTLLAAAGFIA 120
           ISAAV+LMR ASAHLRGRVMGVRMMVIYGLPLGLLAAGSLIDLIGY+ATG+L A +GFIA
Sbjct: 302 ISAAVILMRTASAHLRGRVMGVRMMVIYGLPLGLLAAGSLIDLIGYSATGSLYAVSGFIA 361

Query: 121 MLAIALHWRADLWPVHAPANAR 142
           M AIA+ WRADLWP+HAPANAR
Sbjct: 362 MAAIAVRWRADLWPLHAPANAR 383


>ref|YP_380301.1| transporter [Chlorobium chlorochromatii CaD3]
 gb|ABB29258.1| transporter, putative [Chlorobium chlorochromatii CaD3]
          Length = 429

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 1   VGSLIGSITLSM-AGGVRIARLLIGATLAWYAMLLVFVELRTMPVAMACLLFAGIAQSMS 59
           +GS++G+I +SM A  ++  R +   +L +   LL F     +P+AM  L FAG     +
Sbjct: 293 IGSVMGTIMVSMLANKIQPLRFIAIGSLIFAVALLGFTLTENLPLAMVGLFFAGFGLVAA 352

Query: 60  MISAAVMLMRNASAHLRGRVMGVRMMVIYG-LPLGLLAAGSLIDLIG 105
           + + +  +        RGRVM + MM+  G +PLG +  G L DL G
Sbjct: 353 VSTLSATIQGAVEDRFRGRVMSLYMMIFMGFMPLGNVTIGYLSDLFG 399


>ref|YP_910581.1| major facilitator transporter [Chlorobium phaeobacteroides DSM 266]
 gb|ABL64157.1| major facilitator superfamily MFS_1 [Chlorobium phaeobacteroides
           DSM 266]
          Length = 436

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 2   GSLIGSITLSMAGG-VRIARLLIGATLAWYAMLLVFVELRTMPVAMACLLFAGIAQSMSM 60
           GSL G++ +SM+ G +R + ++IG  L +   L  F       VAMA L  AGI    + 
Sbjct: 294 GSLSGTVVVSMSSGKIRSSAMVIGGILVFSLALTAFTFASDERVAMAFLFIAGIGMLSAF 353

Query: 61  ISAAVMLMRNASAHLRGRVMGVRMMVIYG-LPLGLLAAGSLIDLIG 105
            +    + R      RGRVM + +MV+ G +PLG L  G L +  G
Sbjct: 354 ATMTATVQRLVEDSYRGRVMSIYLMVLMGFMPLGNLQVGFLSEQFG 399


>ref|YP_004802360.1| major facilitator superfamily protein [Streptomyces sp. SirexAA-E]
 gb|AEN09820.1| major facilitator superfamily MFS_1 [Streptomyces sp. SirexAA-E]
          Length = 421

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 1   VGSLIGSITLSMAGGVRIARL-LIGATLAWYAMLLVFVELRTMPVAMACLLFAGIAQSMS 59
           +G+L+GS+     G +R   L ++ A   W A + VF   R +   +A L  AG A S+S
Sbjct: 279 LGALLGSVFSGWLGRIRRHGLAVLIAVCCWGAAVAVFGLTRQLWPGLALLAVAGCADSIS 338

Query: 60  MISAAVMLMRNASAHLRGRVMGVRMMVIYGLP-LGLLAAGSLIDLIGYTATGTLLAAAGF 118
           M+    ML   A   +RGR+ GV ++V+ G P LG L AGS+ DL    A+  +    G 
Sbjct: 339 MVFRNTMLQAAAPDEMRGRLQGVFIVVVAGGPRLGDLMAGSVADL----ASPAVAVTGGG 394

Query: 119 IAMLAI----ALHWR 129
           IA + I     L WR
Sbjct: 395 IACVVIVCLLGLRWR 409


>ref|NP_661008.1| transporter, putative [Chlorobium tepidum TLS]
 gb|AAM71350.1| transporter, putative [Chlorobium tepidum TLS]
          Length = 440

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 1   VGSLIGSITLSM-AGGVRIARLLIGATLAWYAMLLVFVELRTMPVAMACLLFAGIAQSMS 59
           +GSL G++ +SM +G VR  RL+IG  L +   L  F     +P+A+  L  +G+    +
Sbjct: 295 LGSLSGTVVVSMTSGKVRADRLVIGGILTFAVALAAFTFATWLPLALFFLYLSGLGMLSA 354

Query: 60  MISAAVMLMRNASAHLRGRVMGVRMMVIYGL-PLGLLAAGSLIDLIGYTA 108
             + +  + R      RGRVM + +MV+ GL P G L  G L +  G  A
Sbjct: 355 FATMSATVQRLVDDRFRGRVMSIYLMVLLGLMPFGNLLMGLLSEHFGTPA 404