BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0021.p (360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774116.1| hypothetical protein blr7476 [Bradyrhizobium ja... 426 e-117 ref|YP_782549.1| putative ribonuclease BN [Rhodopseudomonas palu... 420 e-115 ref|YP_001238472.1| hypothetical protein BBta_2397 [Bradyrhizobi... 388 e-106 ref|YP_001204179.1| putative ribonuclease [Bradyrhizobium sp. OR... 382 e-104 ref|YP_001768376.1| ribonuclease BN [Methylobacterium sp. 4-46] ... 367 1e-99 >ref|NP_774116.1| hypothetical protein blr7476 [Bradyrhizobium japonicum USDA 110] dbj|BAC52741.1| blr7476 [Bradyrhizobium japonicum USDA 110] Length = 376 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/340 (65%), Positives = 269/340 (79%), Gaps = 9/340 (2%) Query: 29 RSERPSDREQGVEPTLAETLD--------RGRLADTPLEIPAAGWKDILLRTYQQIGEDR 80 R P D G E ET GR A +PL IP AGWKDI RTYQ+I +DR Sbjct: 36 RPGPPQDHHNG-EANAPETSPARAAVQPGHGRGAKSPLAIPWAGWKDIFWRTYQRIDDDR 94 Query: 81 LLATAAGVVFYGLLAIFPAITALVSSYGLFADPSTISSNLQSLALMLPEGSFAIVQDQIA 140 LLATA GVVF+GLLAIFPA+TALVSSYGLFADPSTIS+NLQ+LA MLPEGSF IV+DQ+A Sbjct: 95 LLATAGGVVFFGLLAIFPAVTALVSSYGLFADPSTISANLQTLATMLPEGSFQIVEDQVA 154 Query: 141 RVLAKGTSTLGLTFAGGLLIAIWSANAGMKAIFDALNVVYDEKENRGFVKLNLMSLAFTI 200 RV++KG +TLG+TF GLL+AIWSANAG+K+IFDALNV Y+E+E R F++LN +SLAFT Sbjct: 155 RVVSKGNTTLGVTFLLGLLLAIWSANAGVKSIFDALNVAYEEREKRSFIRLNSVSLAFTA 214 Query: 201 AGLISIMLMVGAVVVVPLLLRQVGLGTTAELVIRLGRWPILVLLLLTALAVLYRYGPSRT 260 G+++++LMVGAVV PL L +GL ++L++ L RWP+L L+LL ALA+LYR+ PSR Sbjct: 215 GGIVALLLMVGAVVAFPLALDHLGLAPESKLIVALARWPLLFLILLVALAILYRFAPSRD 274 Query: 261 RPRWQWLSVGAVAAAVLWLAGSVLLSWYLANFGDYNATYGSLGAAIGLMTWMWMSAIIVL 320 PRWQWLS+GAVAAA+LW+AGS LLSWYL+ F +YNATYGSLGAAIGLM WMWMSAI+++ Sbjct: 275 APRWQWLSLGAVAAALLWIAGSALLSWYLSEFANYNATYGSLGAAIGLMMWMWMSAIVIM 334 Query: 321 CGAELNSEIEHQTMLDSTEGLRKPLGARGATMADTVGRAS 360 GAELNSEIE QT+ D+T G +PLG+R A ADTVG A+ Sbjct: 335 FGAELNSEIERQTLRDTTTGQPRPLGSREAVSADTVGAAA 374 >ref|YP_782549.1| putative ribonuclease BN [Rhodopseudomonas palustris BisA53] gb|ABJ07569.1| putative ribonuclease BN [Rhodopseudomonas palustris BisA53] Length = 370 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 253/327 (77%), Gaps = 5/327 (1%) Query: 32 RPSDREQGVEPTLAETLDRGRLADTPLEIPAAGWKDILLRTYQQIGEDRLLATAAGVVFY 91 +PS+ + P+ RGR A TP EIPA GW+DI+ RTY+QI +DRLLA AAGVVFY Sbjct: 45 QPSNDDAAAPPSKG----RGRFAKTPAEIPAKGWRDIIWRTYEQINDDRLLAVAAGVVFY 100 Query: 92 GLLAIFPAITALVSSYGLFADPSTISSNLQSLALMLPEGSFAIVQDQIARVLAKGTSTLG 151 GLLA+FPAITALVSSY L ADP TI +L LA +LP G+F++V+DQIARVLAKG LG Sbjct: 101 GLLALFPAITALVSSYALVADPQTIRDHLSFLAGVLPAGTFSVVEDQIARVLAKGEVKLG 160 Query: 152 LTFAGGLLIAIWSANAGMKAIFDALNVVYDEKENRGFVKLNLMSLAFTIAGLISIMLMVG 211 F +A+WSAN GMKAI DALNVVYDE+E RGF+KLN +SLAFT+ GL++++ +G Sbjct: 161 AAFLFSFALALWSANGGMKAIIDALNVVYDEEEKRGFIKLNAVSLAFTLGGLLAVLAAIG 220 Query: 212 AVVVVPLLLRQVGLGTTAELVIRLGRWPILVLLLLTALAVLYRYGPSRTRPRWQWLSVGA 271 VV P+LL VGLGT +L++R GRWP L +++L LAVLYR+ PSR P+W+W+SVG+ Sbjct: 221 LVVAAPILLSMVGLGTIGDLLLRFGRWPALAVMILAGLAVLYRFAPSRRSPQWKWISVGS 280 Query: 272 VAAAVLWLAGSVLLSWYLANFGDYNATYGSLGAAIGLMTWMWMSAIIVLCGAELNSEIEH 331 V+A V+WL GS LS+YLAN+G Y+ATYGSLGAAIGLM WMWMS I+VL GAELNSEIEH Sbjct: 281 VSATVIWLVGSAALSYYLANYGAYDATYGSLGAAIGLMIWMWMSTIVVLLGAELNSEIEH 340 Query: 332 QTMLDSTEG-LRKPLGARGATMADTVG 357 QT+ DST G KP+G RGA MADTVG Sbjct: 341 QTVKDSTAGPAAKPIGHRGAKMADTVG 367 >ref|YP_001238472.1| hypothetical protein BBta_2397 [Bradyrhizobium sp. BTAi1] gb|ABQ34566.1| putative membrane protein of unknown function with ribonuclease domain [Bradyrhizobium sp. BTAi1] Length = 352 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/343 (54%), Positives = 251/343 (73%) Query: 18 LATLAISRQLSRSERPSDREQGVEPTLAETLDRGRLADTPLEIPAAGWKDILLRTYQQIG 77 LA L ++ + E+ S+ +G + A DRGRLA+ P EIPA GWKD+L R YQ I Sbjct: 10 LALLGLAFLIQYFEQRSEEMRGQRSSTALGDDRGRLANAPSEIPARGWKDVLYRVYQNIT 69 Query: 78 EDRLLATAAGVVFYGLLAIFPAITALVSSYGLFADPSTISSNLQSLALMLPEGSFAIVQD 137 E R++A AAG+ FY LLAIFPA+ ALV+ YGLF+DP+ I+ +L+ L +LP G+ I +D Sbjct: 70 EHRIVALAAGMTFYTLLAIFPALAALVAIYGLFSDPARITGHLEQLQGLLPGGAIDIARD 129 Query: 138 QIARVLAKGTSTLGLTFAGGLLIAIWSANAGMKAIFDALNVVYDEKENRGFVKLNLMSLA 197 Q+ RV AKG+ LGLTF L I++WSANA MK++FD LNVVY E E RGF KLN +SL Sbjct: 130 QLTRVSAKGSQALGLTFGISLAISLWSANAAMKSLFDTLNVVYREPETRGFFKLNAISLL 189 Query: 198 FTIAGLISIMLMVGAVVVVPLLLRQVGLGTTAELVIRLGRWPILVLLLLTALAVLYRYGP 257 FT ++ ++ +GA+VVVP++L +GL A+L++R+GRWP + + + LA++YRYGP Sbjct: 190 FTGGAILFALVAIGAIVVVPVVLHSMGLSDAADLLLRIGRWPAIFVCVSLGLALIYRYGP 249 Query: 258 SRTRPRWQWLSVGAVAAAVLWLAGSVLLSWYLANFGDYNATYGSLGAAIGLMTWMWMSAI 317 R P+W+W+S G+ AA LWL GS L SWY ANFG +NATYGSLGAAIG MTW+W+SAI Sbjct: 250 DREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAIGFMTWIWISAI 309 Query: 318 IVLCGAELNSEIEHQTMLDSTEGLRKPLGARGATMADTVGRAS 360 ++L G EL++E+EHQT+ D+T G KPLGARGATMADTVG ++ Sbjct: 310 VILIGGELDAELEHQTLRDTTTGPEKPLGARGATMADTVGHST 352 >ref|YP_001204179.1| putative ribonuclease [Bradyrhizobium sp. ORS 278] emb|CAL75942.1| conserved hypothetical protein; putative membrane protein; putative ribonuclease [Bradyrhizobium sp. ORS 278] Length = 353 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 245/331 (74%) Query: 30 SERPSDREQGVEPTLAETLDRGRLADTPLEIPAAGWKDILLRTYQQIGEDRLLATAAGVV 89 +RP + + RGRLAD+P EIPA GWKD+L R Y+ +G+ R++A AAG+ Sbjct: 23 DQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKDVLYRVYENVGDHRIVALAAGMT 82 Query: 90 FYGLLAIFPAITALVSSYGLFADPSTISSNLQSLALMLPEGSFAIVQDQIARVLAKGTST 149 FY LLAIFPA+ A+V+ YGLF+DP+ I+ +L+ L ++P G+ I +DQ+ RV AKG+ Sbjct: 83 FYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLMPGGAIDIARDQLTRVSAKGSQA 142 Query: 150 LGLTFAGGLLIAIWSANAGMKAIFDALNVVYDEKENRGFVKLNLMSLAFTIAGLISIMLM 209 LG+TF L I++WSANA MK++FD LNVVY E E RGF+KLN +SL FT ++ +L Sbjct: 143 LGVTFLVSLAISLWSANAAMKSLFDTLNVVYREPERRGFIKLNAISLLFTGGAILFALLA 202 Query: 210 VGAVVVVPLLLRQVGLGTTAELVIRLGRWPILVLLLLTALAVLYRYGPSRTRPRWQWLSV 269 + A+VVVP++L+ VGL A+L++R+GRWP + + + LA++YRYGP R P+W+W+S Sbjct: 203 IAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSLGLALIYRYGPDREEPKWRWISW 262 Query: 270 GAVAAAVLWLAGSVLLSWYLANFGDYNATYGSLGAAIGLMTWMWMSAIIVLCGAELNSEI 329 G+ AA LWL GS L SWY ANFG +NATYGSLGAA+G MTW+W+SAI++L GAEL++E+ Sbjct: 263 GSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVGFMTWIWISAIVILIGAELDAEL 322 Query: 330 EHQTMLDSTEGLRKPLGARGATMADTVGRAS 360 EHQT+ D+T G +PLG RGATMADTVGR++ Sbjct: 323 EHQTLRDTTMGGERPLGTRGATMADTVGRST 353 >ref|YP_001768376.1| ribonuclease BN [Methylobacterium sp. 4-46] gb|ACA15942.1| ribonuclease BN [Methylobacterium sp. 4-46] Length = 386 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 191/334 (57%), Positives = 246/334 (73%), Gaps = 10/334 (2%) Query: 28 SRSERPSDREQGVEPTLAETLDRGRLADTPLEIPAAGWKDILLRTYQQIGEDRLLATAAG 87 S S RP+ R EP DRGR A+TP EIPA GWKDIL R Y + +DR+L+ AAG Sbjct: 56 SYSGRPAQRVADTEP------DRGRHAETPTEIPAKGWKDILYRVYVEFQKDRVLSVAAG 109 Query: 88 VVFYGLLAIFPAITALVSSYGLFADPSTISSNLQSLALMLPEGSFAIVQDQIARVLAKGT 147 V FY LLAIFPAI ALVS YGLF DP+TI+ +L L +LP G+ I+ DQ+ R+ AKG Sbjct: 110 VTFYTLLAIFPAIAALVSLYGLFTDPATINDHLSLLQGVLPSGALDIIGDQVKRITAKGG 169 Query: 148 STLGLTFAGGLLIAIWSANAGMKAIFDALNVVYDEKENRGFVKLNLMSLAFTIAGLISIM 207 +TLGLTF L I++WSANAG+KAIFDALN+VY+E+E R F++LNL SLAFT+ GL+ ++ Sbjct: 170 TTLGLTFFTSLAISLWSANAGVKAIFDALNIVYEEEEKRSFIRLNLQSLAFTLGGLLFVV 229 Query: 208 LMVGAVVVVPLLLRQVG-LG---TTAELVIRLGRWPILVLLLLTALAVLYRYGPSRTRPR 263 + +VV+P++L VG G + I L RWPIL+ +LL ALAVLYRYGPSR +P+ Sbjct: 230 FALTGIVVLPVILNFVGTFGISISPKAWYIALLRWPILLAVLLLALAVLYRYGPSRDKPQ 289 Query: 264 WQWLSVGAVAAAVLWLAGSVLLSWYLANFGDYNATYGSLGAAIGLMTWMWMSAIIVLCGA 323 W+W++ G++ A V+W+ GS+ SWY+A+FG YN TYGSLGAA+G MTW+W+SA IVL G Sbjct: 290 WRWVTPGSLIAGVVWIIGSIAFSWYVAHFGSYNETYGSLGAAVGFMTWIWISATIVLLGG 349 Query: 324 ELNSEIEHQTMLDSTEGLRKPLGARGATMADTVG 357 E+N+E+EHQT+ D+TEG PLG R A MADTVG Sbjct: 350 EINAELEHQTIRDTTEGAPAPLGTRRARMADTVG 383