BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0009.p (650 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08629856.1| methionyl-tRNA synthetase [Bradyrhizobiaceae ... 907 0.0 ref|YP_577267.1| methionyl-tRNA synthetase [Nitrobacter hamburge... 894 0.0 ref|YP_001205819.1| methionyl-tRNA synthetase [Bradyrhizobium sp... 887 0.0 gb|ABA04723.1| methionyl-tRNA synthetase [Nitrobacter winogradsk... 885 0.0 ref|YP_001240072.1| methionyl-tRNA synthetase [Bradyrhizobium sp... 885 0.0 >ref|ZP_08629856.1| methionyl-tRNA synthetase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07499.1| methionyl-tRNA synthetase [Bradyrhizobiaceae bacterium SG-6C] Length = 653 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/545 (80%), Positives = 470/545 (86%), Gaps = 17/545 (3%) Query: 123 KAPTPAKARAPKQP-KPAAAAPAAASVAVPAADRRNMFYITTAIAYPNGQPHIGHAYEAI 181 K P AK PK P KPA AAA AV A +N FYITTAIAYPNG PHIGHAYEAI Sbjct: 106 KTPQAAKPLTPKAPPKPAKVKTAAAPQAVANASAKNSFYITTAIAYPNGAPHIGHAYEAI 165 Query: 182 ATDALARFQRLDGKDVFFLTGTDEHGQKMIQTAASEGMTPYDLATRNAARFKEMDERLNV 241 ATDALARFQRLDGKDVFFLTGTDEHGQKMIQTA E MTP +LATRNAARFKEMD+RLN+ Sbjct: 166 ATDALARFQRLDGKDVFFLTGTDEHGQKMIQTAQKENMTPLELATRNAARFKEMDQRLNI 225 Query: 242 SFDRFIRTSEPAHHRSVQEIWRRMQDNGDIYIDTYAGWYSVRDEAYYAEEETVVGEDNVR 301 SFDRFIRTSE HH S QEIW+RM NGDIY+D+YAGWYSVRDEAYYAE+ETVVGEDNVR Sbjct: 226 SFDRFIRTSEKQHHESTQEIWKRMAANGDIYLDSYAGWYSVRDEAYYAEDETVVGEDNVR 285 Query: 302 RGPQGTPVEWVEEKSYFFKLSAYQDKLLHLYESQPDFIGPDSRRNEVMSFVRGGLKDLSI 361 RGPQGTPVEWVEEKSYFFKLSAYQDKLL LYE+QPDFIGPDSR+NEV+SFV+ GLKDLSI Sbjct: 286 RGPQGTPVEWVEEKSYFFKLSAYQDKLLALYENQPDFIGPDSRKNEVVSFVKSGLKDLSI 345 Query: 362 SRTTFDWGVKVPEDPEHVMYVWVDALTNYITGVGYPDENDKHWRYWPADX---------- 411 SRTTFDWGVKVP D +HVMYVWVDALTNYITGVG+PDE DK+W YWPAD Sbjct: 346 SRTTFDWGVKVPGDEDHVMYVWVDALTNYITGVGFPDEGDKNWHYWPADIHIIGKDIIRF 405 Query: 412 ------AFLMSAGIPVQKRVYAHGFLFNRGEKMSKSVGNVVDPFNLAEQYGVDQMRYFFL 465 AFLMSAGIPVQKRV+AHGFLFNRGEKMSKSVGNVVDPF+LA+ YGVDQ+RYFFL Sbjct: 406 HAVYWPAFLMSAGIPVQKRVFAHGFLFNRGEKMSKSVGNVVDPFSLADAYGVDQLRYFFL 465 Query: 466 REVPFGQDGNYNHEAIVARINADLANDFGNLAQRSLSMIAKQLGGVLPEPGEFSDNDKAI 525 REVPFGQDGNYNHEAIVAR NADLANDFGNLAQRSLSMIAKQ GVLP+PG+FSDNDKAI Sbjct: 466 REVPFGQDGNYNHEAIVARTNADLANDFGNLAQRSLSMIAKQYQGVLPQPGDFSDNDKAI 525 Query: 526 LAQADAMLETSRTAMATQQIHQWLNTVWAVVAEANRYFAGEAPWALAKTDPSRQKTVLYV 585 LA AD MLE +RTAMATQQIHQ LN +WAVVAEANRYFAGEAPWALAKTDP+RQKTVLYV Sbjct: 526 LAMADGMLEQARTAMATQQIHQALNAIWAVVAEANRYFAGEAPWALAKTDPARQKTVLYV 585 Query: 586 TAEVVRQIAIMAQAVMPESCGKMLDSLGVAQDARSFAALAERIRPGTVLPAPVGVFPRYV 645 TAEVVRQIAI+AQ MPESC K+LD LG+A DAR FAAL+ RI+ G+ LP P VFPRYV Sbjct: 586 TAEVVRQIAILAQPAMPESCAKILDILGIASDARDFAALSTRIKGGSQLPPPAPVFPRYV 645 Query: 646 EPKTE 650 EPK + Sbjct: 646 EPKDD 650 >ref|YP_577267.1| methionyl-tRNA synthetase [Nitrobacter hamburgensis X14] gb|ABE62807.1| methionyl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 659 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/573 (76%), Positives = 470/573 (82%), Gaps = 28/573 (4%) Query: 93 ATKAPPKKAAAAGVAPAAKNPALPTASVAEKAPTPAKARAPKQPKPAAAAPAAASVAVPA 152 ATK PKKAA V AK A P S A++ A +R +P AP S PA Sbjct: 94 ATKKIPKKAATNKVT--AKK-AAPKRSAAKRPAKSATSR-----RPGTTAPPTPSSVTPA 145 Query: 153 ADRRNMFYITTAIAYPNGQPHIGHAYEAIATDALARFQRLDGKDVFFLTGTDEHGQKMIQ 212 R N FYITTAI YPNG PHIGHAYEAIATD LARFQRLDGKDVFFLTGTDEHGQKM+Q Sbjct: 146 --RTNTFYITTAIVYPNGAPHIGHAYEAIATDVLARFQRLDGKDVFFLTGTDEHGQKMVQ 203 Query: 213 TAASEGMTPYDLATRNAARFKEMDERLNVSFDRFIRTSEPAHHRSVQEIWRRMQDNGDIY 272 TA E ++ +LATRNA +++DE LN+SF+RFIRTSEPAHH SVQEIW+RM NGDIY Sbjct: 204 TAQKENISALELATRNAELLRKLDETLNISFNRFIRTSEPAHHHSVQEIWKRMAANGDIY 263 Query: 273 IDTYAGWYSVRDEAYYAEEETVVGEDNVRRGPQGTPVEWVEEKSYFFKLSAYQDKLLHLY 332 + +YAGWYSVRDEAYYAE+ETVVGEDNVRRGPQGTPVEWVEEKSYFFKLSAYQD+LL LY Sbjct: 264 LSSYAGWYSVRDEAYYAEDETVVGEDNVRRGPQGTPVEWVEEKSYFFKLSAYQDRLLALY 323 Query: 333 ESQPDFIGPDSRRNEVMSFVRGGLKDLSISRTTFDWGVKVPEDPEHVMYVWVDALTNYIT 392 ESQPDFIGPDSRRNEV+SFV+GGLKDLSISRTTFDWGVKVP+DPEHVMYVWVDALTNYIT Sbjct: 324 ESQPDFIGPDSRRNEVISFVKGGLKDLSISRTTFDWGVKVPDDPEHVMYVWVDALTNYIT 383 Query: 393 GVGYPDENDKHWRYWPADX----------------AFLMSAGIPVQKRVYAHGFLFNRGE 436 GVG+PDENDK WRYWPAD AFLMSAGIP+QKRVYAHGFLFNRGE Sbjct: 384 GVGFPDENDKDWRYWPADLHIIGKDIIRFHAVYWPAFLMSAGIPLQKRVYAHGFLFNRGE 443 Query: 437 KMSKSVGNVVDPFNLAEQYGVDQMRYFFLREVPFGQDGNYNHEAIVARINADLANDFGNL 496 KMSKSVGNVVDPFNLA QYGVDQ+RYFFLREVPFGQDG+YNHEAIVARINADLANDFGNL Sbjct: 444 KMSKSVGNVVDPFNLAAQYGVDQVRYFFLREVPFGQDGSYNHEAIVARINADLANDFGNL 503 Query: 497 AQRSLSMIAKQLGGVLPEPGEFSDNDKAILAQADAMLETSRTAMATQQIHQWLNTVWAVV 556 AQRSLSMIAKQ G LPEPG+FSDNDKAILAQAD M+ +R AM TQQIHQ LN VWAVV Sbjct: 504 AQRSLSMIAKQHDGALPEPGDFSDNDKAILAQADGMIAVAREAMNTQQIHQALNAVWAVV 563 Query: 557 AEANRYFAGEAPWALAKTDPSRQKTVLYVTAEVVRQIAIMAQAVMPESCGKMLDSLGVAQ 616 AEANRYFAGEAPW LAKTDP+RQKTVLYV AEVVRQIAI+AQ MP SC MLD LG+ Sbjct: 564 AEANRYFAGEAPWVLAKTDPARQKTVLYVAAEVVRQIAILAQPAMPASCATMLDLLGIPA 623 Query: 617 DARSFAALAE--RIRPGTVLPAPVGVFPRYVEP 647 R+FA L RI+PGT LP PV VFPRYVEP Sbjct: 624 SERNFAMLGGHVRIKPGTTLPPPVPVFPRYVEP 656 >ref|YP_001205819.1| methionyl-tRNA synthetase [Bradyrhizobium sp. ORS 278] emb|CAL77594.1| Methionyl-tRNA synthetase (EC 6.1.1.10) [Bradyrhizobium sp. ORS 278] Length = 705 Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/525 (79%), Positives = 454/525 (86%), Gaps = 23/525 (4%) Query: 141 AAPAAASVAVPAADRRNMFYITTAIAYPNGQPHIGHAYEAIATDALARFQRLDGKDVFFL 200 A P AA A + N FY+TTAIAYPNG PHIGHAYEAIATDA+ARF RLDGKDVFFL Sbjct: 183 ATPVAA-----ATENANTFYVTTAIAYPNGSPHIGHAYEAIATDAIARFARLDGKDVFFL 237 Query: 201 TGTDEHGQKMIQTAASEGMTPYDLATRNAARFKEMDERLNVSFDRFIRTSEPAHHRSVQE 260 TGTDEHG KM+QTA +EG+TP +LA RNA RF+EMDERLNVSFDRFIRT+EPAHH+SVQ Sbjct: 238 TGTDEHGLKMVQTAQNEGLTPSELAARNAGRFREMDERLNVSFDRFIRTTEPAHHKSVQA 297 Query: 261 IWRRMQDNGDIYIDTYAGWYSVRDEAYYAEEETVVGEDNVRRGPQGTPVEWVEEKSYFFK 320 IW RM +NGDIY DTY+GWYSVRDEAYYAEEETVVGEDNVRRGPQGTPVEWVEEKSYFF+ Sbjct: 298 IWTRMLENGDIYADTYSGWYSVRDEAYYAEEETVVGEDNVRRGPQGTPVEWVEEKSYFFR 357 Query: 321 LSAYQDKLLHLYESQPDFIGPDSRRNEVMSFVRGGLKDLSISRTTFDWGVKVPEDPEHVM 380 LSAYQDKLL LYE+QPDFIGPD+RRNE+ SFVRGGLKDLSISRTTFDWGV+VP D EHVM Sbjct: 358 LSAYQDKLLALYENQPDFIGPDARRNEITSFVRGGLKDLSISRTTFDWGVRVPHDDEHVM 417 Query: 381 YVWVDALTNYITGVGYPDENDKHWRYWPADX----------------AFLMSAGIPVQKR 424 YVWVDALTNYITGVG+PDEND +W++WPAD AFLMSAG+PV KR Sbjct: 418 YVWVDALTNYITGVGFPDENDANWKFWPADVHVIGKDIIRFHAVYWPAFLMSAGVPVPKR 477 Query: 425 VYAHGFLFNRGEKMSKSVGNVVDPFNLAEQYGVDQMRYFFLREVPFGQDGNYNHEAIVAR 484 VYAHGFLFNRGEKMSKSVGNVVDPFNLA+QYGVDQ+RYFFLREVPFGQDGNYNHEAIVAR Sbjct: 478 VYAHGFLFNRGEKMSKSVGNVVDPFNLADQYGVDQLRYFFLREVPFGQDGNYNHEAIVAR 537 Query: 485 INADLANDFGNLAQRSLSMIAKQLGGVLPEPGEFSDNDKAILAQADAMLETSRTAMATQQ 544 INADLAND GNLAQRSLSMI KQ GGVLPEPGEFS ND+AILA+ADAM+ +R AMATQQ Sbjct: 538 INADLANDLGNLAQRSLSMITKQFGGVLPEPGEFSANDQAILAEADAMIGAARKAMATQQ 597 Query: 545 IHQWLNTVWAVVAEANRYFAGEAPWALAKTDPSRQKTVLYVTAEVVRQIAIMAQAVMPES 604 IHQWLN VW+VVAEANRYFAGEAPWALAKTDP RQ TVLYVTAEV+RQ+AI+ Q VMP + Sbjct: 598 IHQWLNAVWSVVAEANRYFAGEAPWALAKTDPKRQHTVLYVTAEVIRQVAILTQPVMPAA 657 Query: 605 CGKMLDSLGVAQDARSFAALAE--RIRPGTVLPAPVGVFPRYVEP 647 K+LDSLG+ +D RSFA L RI PGT LPAP VFPRY+EP Sbjct: 658 SAKLLDSLGIPEDERSFARLGGEVRIAPGTQLPAPQAVFPRYIEP 702 >gb|ABA04723.1| methionyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 692 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/610 (72%), Positives = 495/610 (81%), Gaps = 29/610 (4%) Query: 67 KKVVKKAVKKAAKKT-AKSTARKAAAKAT---KAPPKKAAAAGVAPAAKNP--ALPTASV 120 K+ V+KA +K AKK A T +K A+K T K PKK A V P P A P + Sbjct: 80 KRTVRKAARKPAKKQPATRTPKKVASKKTASKKVAPKKPTAKKVTPRKTAPRKAAPEKAA 139 Query: 121 AEKAPT--PAKARAPKQPKPAAA---APAAASVAVPAADRRNMFYITTAIAYPNGQPHIG 175 +++ T P K P+ P+ AA AA+ + PA+ R + FYITTAI YPNG PHIG Sbjct: 140 RKRSVTTPPVKKTKPRAPRKVAAKVDTAAASLPSSPASSRADTFYITTAIVYPNGAPHIG 199 Query: 176 HAYEAIATDALARFQRLDGKDVFFLTGTDEHGQKMIQTAASEGMTPYDLATRNAARFKEM 235 HAYEAIATDALARFQRLDGKDVFFLTGTDEHGQKM+QTA E ++ +LATRNA +++ Sbjct: 200 HAYEAIATDALARFQRLDGKDVFFLTGTDEHGQKMVQTAQRENISALELATRNAELLRKL 259 Query: 236 DERLNVSFDRFIRTSEPAHHRSVQEIWRRMQDNGDIYIDTYAGWYSVRDEAYYAEEETVV 295 DE L++SFDRFIRTSE AHHRSVQ+IW+RM NGDIY+ Y+GWYSVRDEAYYAE+ETVV Sbjct: 260 DEALDISFDRFIRTSESAHHRSVQDIWKRMAGNGDIYLSNYSGWYSVRDEAYYAEDETVV 319 Query: 296 GEDNVRRGPQGTPVEWVEEKSYFFKLSAYQDKLLHLYESQPDFIGPDSRRNEVMSFVRGG 355 GEDNVRRGPQGTPVEWVEEKSYFFKLSAY+D+LL LYES+PDFIGPDSRRNEV+SFV+GG Sbjct: 320 GEDNVRRGPQGTPVEWVEEKSYFFKLSAYEDRLLALYESEPDFIGPDSRRNEVVSFVKGG 379 Query: 356 LKDLSISRTTFDWGVKVPEDPEHVMYVWVDALTNYITGVGYPDENDKHWRYWPADX---- 411 LKDLSISRTTFDWGVKVP DPEHVMYVWVDALTNYITGVG+PDE++ +WR+WPAD Sbjct: 380 LKDLSISRTTFDWGVKVPGDPEHVMYVWVDALTNYITGVGFPDEDESNWRFWPADIHIIG 439 Query: 412 ------------AFLMSAGIPVQKRVYAHGFLFNRGEKMSKSVGNVVDPFNLAEQYGVDQ 459 AFLMSAGI + KRVYAHGFLFNRGEKMSKSVGNVVDPF+LA QYGVDQ Sbjct: 440 KDIIRFHAVYWPAFLMSAGIALPKRVYAHGFLFNRGEKMSKSVGNVVDPFSLAAQYGVDQ 499 Query: 460 MRYFFLREVPFGQDGNYNHEAIVARINADLANDFGNLAQRSLSMIAKQLGGVLPEPGEFS 519 MRYFFLREVPFGQDG+YNHEAIVARINADLANDFGNLAQRSLSMIAKQ GGVLPEPG+FS Sbjct: 500 MRYFFLREVPFGQDGSYNHEAIVARINADLANDFGNLAQRSLSMIAKQHGGVLPEPGDFS 559 Query: 520 DNDKAILAQADAMLETSRTAMATQQIHQWLNTVWAVVAEANRYFAGEAPWALAKTDPSRQ 579 D DKAILAQAD M+ +R AM TQQIHQ LN +W+VVAEANRYFAGEAPWALAKTDP+RQ Sbjct: 560 DADKAILAQADGMIAIAREAMNTQQIHQALNAIWSVVAEANRYFAGEAPWALAKTDPARQ 619 Query: 580 KTVLYVTAEVVRQIAIMAQAVMPESCGKMLDSLGVAQDARSFAALAE--RIRPGTVLPAP 637 KTVLYVTAEVVRQIAI+AQ MP +C K+LD LG+ D R+FA L RIRPG+ LPAP Sbjct: 620 KTVLYVTAEVVRQIAILAQPAMPAACAKLLDILGIPADERNFAMLGGDIRIRPGSALPAP 679 Query: 638 VGVFPRYVEP 647 V VFPRYVEP Sbjct: 680 VPVFPRYVEP 689 >ref|YP_001240072.1| methionyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ36166.1| methionyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 722 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/509 (80%), Positives = 450/509 (88%), Gaps = 18/509 (3%) Query: 157 NMFYITTAIAYPNGQPHIGHAYEAIATDALARFQRLDGKDVFFLTGTDEHGQKMIQTAAS 216 N FY+TTAIAYPNG PHIGHAYEAIATDA+ARF RLDGKDVFFLTGTDEHG KM+QTA + Sbjct: 211 NTFYVTTAIAYPNGNPHIGHAYEAIATDAIARFARLDGKDVFFLTGTDEHGLKMVQTAQN 270 Query: 217 EGMTPYDLATRNAARFKEMDERLNVSFDRFIRTSEPAHHRSVQEIWRRMQDNGDIYIDTY 276 EG+TP +LATRNA RF++MDERLNVSFDRFIRT+EPAHH+SVQ IW RM +NGDIY DTY Sbjct: 271 EGLTPGELATRNAGRFRDMDERLNVSFDRFIRTTEPAHHKSVQAIWNRMLENGDIYADTY 330 Query: 277 AGWYSVRDEAYYAEEETVVGEDNVRRGPQGTPVEWVEEKSYFFKLSAYQDKLLHLYESQP 336 AGWYSVRDEAYYAE+ETVVGEDNVRRGPQGTPVEWVEEKSYFF+LSAYQD+LL LYESQP Sbjct: 331 AGWYSVRDEAYYAEDETVVGEDNVRRGPQGTPVEWVEEKSYFFRLSAYQDRLLALYESQP 390 Query: 337 DFIGPDSRRNEVMSFVRGGLKDLSISRTTFDWGVKVPEDPEHVMYVWVDALTNYITGVGY 396 DFIGPD+RRNE++SFV+GGLKDLSISRTTFDWGV+VP D EHVMYVWVDALTNYITGVG+ Sbjct: 391 DFIGPDARRNEIISFVKGGLKDLSISRTTFDWGVRVPHDDEHVMYVWVDALTNYITGVGF 450 Query: 397 PDENDKHWRYWPADX----------------AFLMSAGIPVQKRVYAHGFLFNRGEKMSK 440 PDEND +W+YWPAD AFLMSAG+PV KRVYAHGFLFNRGEKMSK Sbjct: 451 PDENDANWKYWPADVHVIGKDIIRFHAVYWPAFLMSAGVPVPKRVYAHGFLFNRGEKMSK 510 Query: 441 SVGNVVDPFNLAEQYGVDQMRYFFLREVPFGQDGNYNHEAIVARINADLANDFGNLAQRS 500 SVGNVVDPFNLA+QYGVDQ+RYFFLREVPFGQDGNYNHEAIVARINADLAND GNLAQRS Sbjct: 511 SVGNVVDPFNLADQYGVDQLRYFFLREVPFGQDGNYNHEAIVARINADLANDLGNLAQRS 570 Query: 501 LSMIAKQLGGVLPEPGEFSDNDKAILAQADAMLETSRTAMATQQIHQWLNTVWAVVAEAN 560 LSMIAKQLGG LPEPGEFS ND+AILA+ADAM+ +R AMATQQIHQWLN VW+VVAEAN Sbjct: 571 LSMIAKQLGGQLPEPGEFSANDRAILAEADAMIGAARKAMATQQIHQWLNAVWSVVAEAN 630 Query: 561 RYFAGEAPWALAKTDPSRQKTVLYVTAEVVRQIAIMAQAVMPESCGKMLDSLGVAQDARS 620 RYFAGEAPWALAKTDP RQ TVLYVTAEV+RQ+AI+ Q VMP + K+LDSLG+ +D R+ Sbjct: 631 RYFAGEAPWALAKTDPKRQHTVLYVTAEVIRQVAILTQPVMPTASAKLLDSLGIPEDERN 690 Query: 621 FAALAERIR--PGTVLPAPVGVFPRYVEP 647 FA L IR GT LPAP VFPRY+EP Sbjct: 691 FARLGGEIRIAAGTQLPAPQAVFPRYIEP 719