BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0008.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771157.1| DNA polymerase III subunit delta' [Bradyrhizobi... 533 e-149 ref|YP_001205818.1| DNA polymerase III subunit delta' [Bradyrhiz... 524 e-147 ref|YP_001240073.1| DNA polymerase III subunit delta' [Bradyrhiz... 522 e-146 ref|YP_486293.1| DNA polymerase III subunit delta' [Rhodopseudom... 507 e-141 ref|YP_577268.1| DNA polymerase III subunit delta' [Nitrobacter ... 499 e-139 >ref|NP_771157.1| DNA polymerase III subunit delta' [Bradyrhizobium japonicum USDA 110] dbj|BAC49782.1| bll4517 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 279/348 (80%), Positives = 298/348 (85%), Gaps = 2/348 (0%) Query: 1 MSARKVEQESAARHPRETPDLFGHREAETALLDAYRSGRIPHAWLIGGAQGIGKATLAYR 60 MS R+ E+ESA HPRET LFGHREAETALL AYRSGRIPHAWLIGG QGIGKATLAYR Sbjct: 1 MSPRQAERESAIPHPRETSRLFGHREAETALLSAYRSGRIPHAWLIGGPQGIGKATLAYR 60 Query: 61 MARFVLAFRNPKSSQVQQAPTLRVDPADPVARQITAGAHGGLLVLERGVNDRGVMRTVIT 120 MARFVLA P + VQ+A +L VDP D VARQ+ A +HGGLL LER NDRGVMRTVIT Sbjct: 61 MARFVLAHGQPLADVVQRAESLAVDPDDAVARQVAAESHGGLLTLERTANDRGVMRTVIT 120 Query: 121 VDETRETISFFGSTAAVDGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPS 180 VDETRETISFFGSTAA +GWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAP+ Sbjct: 121 VDETRETISFFGSTAAAEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPA 180 Query: 181 RVLPTILSRCRKLLLRPLETDDVVRAAAAATDIESDDPALLEAAAASEGSVGRALSLLGG 240 RVL TI SRCRKL LRPL TD+V+ AAA A + D AL EAA ASEGSV RAL+LLGG Sbjct: 181 RVLATIQSRCRKLRLRPLGTDEVISAAAEAAGLAPTDLALREAAEASEGSVARALTLLGG 240 Query: 241 DALKLQQRTAALLATLPSVDPRELHALGEALGTSDRVALAAFIDGIDRWMSERMRTGDAN 300 DALKLQQRTAALLA LP VDPRELH LG++LGTSDRVALAAFIDGIDRW++ER+ +AN Sbjct: 241 DALKLQQRTAALLARLPQVDPRELHTLGDSLGTSDRVALAAFIDGIDRWIAERLHADEAN 300 Query: 301 A--NLPRLARLAEVWEKIVRAARDTEAYNLERKPLVFSVFSMLADATR 346 A NLPRLARLAEVWEKIVRAARDTE YNLERKPLVFSVF LADATR Sbjct: 301 ANQNLPRLARLAEVWEKIVRAARDTETYNLERKPLVFSVFGWLADATR 348 >ref|YP_001205818.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. ORS 278] emb|CAL77593.1| putative DNA polymerase III, delta prime subunit [Bradyrhizobium sp. ORS 278] Length = 346 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 262/346 (75%), Positives = 294/346 (84%) Query: 1 MSARKVEQESAARHPRETPDLFGHREAETALLDAYRSGRIPHAWLIGGAQGIGKATLAYR 60 MSARKVE E A RHPRET LFGH EAE ALL AYRSGR+ HAWLIGG QGIGKATLAYR Sbjct: 1 MSARKVEPEIAVRHPRETTALFGHCEAEAALLSAYRSGRMAHAWLIGGPQGIGKATLAYR 60 Query: 61 MARFVLAFRNPKSSQVQQAPTLRVDPADPVARQITAGAHGGLLVLERGVNDRGVMRTVIT 120 MARFVL R+P++++V A +L VD D V R I + AHGGLL LER ND+GV+RTVIT Sbjct: 61 MARFVLTHRDPRAAEVLAAESLHVDADDHVTRLIASEAHGGLLTLERSANDKGVLRTVIT 120 Query: 121 VDETRETISFFGSTAAVDGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPS 180 VDETRETISFFGSTAAV+GWR+CIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAP+ Sbjct: 121 VDETRETISFFGSTAAVEGWRICIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPA 180 Query: 181 RVLPTILSRCRKLLLRPLETDDVVRAAAAATDIESDDPALLEAAAASEGSVGRALSLLGG 240 RVL TI SRCR+L LR L T+DV+ AAA A ++ +PAL EAA ASEGSV R L L+GG Sbjct: 181 RVLATIKSRCRRLSLRALSTEDVISAAAEAIGMDGGEPALREAAKASEGSVSRTLMLMGG 240 Query: 241 DALKLQQRTAALLATLPSVDPRELHALGEALGTSDRVALAAFIDGIDRWMSERMRTGDAN 300 D L+LQ RTAALLA+LP +D ELHALG+ALGTSDRVALA+F+D I+RW++ER+R GD N Sbjct: 241 DGLQLQTRTAALLASLPRIDAGELHALGDALGTSDRVALASFLDSIERWVAERLRAGDPN 300 Query: 301 ANLPRLARLAEVWEKIVRAARDTEAYNLERKPLVFSVFSMLADATR 346 A LPRLARLAEVWEKIVRAARDTE+YNLERKPLVFSVF MLA+ATR Sbjct: 301 AELPRLARLAEVWEKIVRAARDTESYNLERKPLVFSVFGMLAEATR 346 >ref|YP_001240073.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. BTAi1] gb|ABQ36167.1| DNA polymerase III, delta prime subunit [Bradyrhizobium sp. BTAi1] Length = 346 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/346 (77%), Positives = 296/346 (85%) Query: 1 MSARKVEQESAARHPRETPDLFGHREAETALLDAYRSGRIPHAWLIGGAQGIGKATLAYR 60 MSARKVE E A RHPRET LFGHR+AE ALL AYRSGR+ HAWLIGG QGIGKATLAYR Sbjct: 1 MSARKVEAEIAVRHPRETTALFGHRDAEAALLAAYRSGRMAHAWLIGGPQGIGKATLAYR 60 Query: 61 MARFVLAFRNPKSSQVQQAPTLRVDPADPVARQITAGAHGGLLVLERGVNDRGVMRTVIT 120 MARFVL R+P S V+ A +L V+P D VAR I + AHGGLL LER ND+GV+RTVIT Sbjct: 61 MARFVLTHRDPSSPAVRAATSLHVEPDDHVARLIASEAHGGLLTLERSANDKGVLRTVIT 120 Query: 121 VDETRETISFFGSTAAVDGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPS 180 VDETRETISFFGSTAAV+GWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAP+ Sbjct: 121 VDETRETISFFGSTAAVEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPA 180 Query: 181 RVLPTILSRCRKLLLRPLETDDVVRAAAAATDIESDDPALLEAAAASEGSVGRALSLLGG 240 RVL TI SRCR+L LR L TDDV+ AAA AT + + DPAL +AA ASEGSV R L L+GG Sbjct: 181 RVLATIKSRCRRLALRALSTDDVISAAAEATGMAAGDPALRDAARASEGSVARTLMLMGG 240 Query: 241 DALKLQQRTAALLATLPSVDPRELHALGEALGTSDRVALAAFIDGIDRWMSERMRTGDAN 300 D L+LQ RT ALLA+LP +DP ELHALG+ALGTSDRVALA+F+D I+RW++ER+RT D N Sbjct: 241 DGLQLQSRTTALLASLPRIDPGELHALGDALGTSDRVALASFLDSIERWVAERLRTSDPN 300 Query: 301 ANLPRLARLAEVWEKIVRAARDTEAYNLERKPLVFSVFSMLADATR 346 A LPRLARLAEVWEKIVRAARDTE+YNLERKPLVFSVF MLA+ATR Sbjct: 301 AELPRLARLAEVWEKIVRAARDTESYNLERKPLVFSVFGMLAEATR 346 >ref|YP_486293.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris HaA2] gb|ABD07382.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris HaA2] Length = 346 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/346 (73%), Positives = 292/346 (84%) Query: 1 MSARKVEQESAARHPRETPDLFGHREAETALLDAYRSGRIPHAWLIGGAQGIGKATLAYR 60 MSARK E AA+ PRET LFGH AE ALLDAYRSGRI HAWLIGG QGIGKATLAYR Sbjct: 1 MSARKASTEIAAKSPRETTALFGHAAAEQALLDAYRSGRIAHAWLIGGPQGIGKATLAYR 60 Query: 61 MARFVLAFRNPKSSQVQQAPTLRVDPADPVARQITAGAHGGLLVLERGVNDRGVMRTVIT 120 MARFVLA R+P + VQ A TL +DP+ PV R + A AHGGLL LER VND+GV+R VIT Sbjct: 61 MARFVLAHRDPMADAVQGAATLDLDPSHPVVRHVAAEAHGGLLTLERSVNDKGVLRNVIT 120 Query: 121 VDETRETISFFGSTAAVDGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPS 180 VDE+RETI FFGSTAAV+GWRVCIVDTVD+LN ++ANALLK++EEPPQ+SLFLL+S++P+ Sbjct: 121 VDESRETIGFFGSTAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPA 180 Query: 181 RVLPTILSRCRKLLLRPLETDDVVRAAAAATDIESDDPALLEAAAASEGSVGRALSLLGG 240 R+LPTILSRCRKL+LRPL DV+ AA ATD+ D L EAAAASEGSV RAL+LLGG Sbjct: 181 RLLPTILSRCRKLMLRPLSVSDVIAAALEATDLSPGDAKLAEAAAASEGSVARALTLLGG 240 Query: 241 DALKLQQRTAALLATLPSVDPRELHALGEALGTSDRVALAAFIDGIDRWMSERMRTGDAN 300 DAL LQQ+T ALL +LP+VDPR LHALGEA+G +DR LAAF+DG+DRW++ R+RTGDAN Sbjct: 241 DALTLQQKTTALLDSLPNVDPRALHALGEAIGGTDRTTLAAFVDGVDRWIAGRLRTGDAN 300 Query: 301 ANLPRLARLAEVWEKIVRAARDTEAYNLERKPLVFSVFSMLADATR 346 A LPRLARLAEVWEKI RAARDTEAYNLERKPLVFSVF +LA+A R Sbjct: 301 AELPRLARLAEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEAVR 346 >ref|YP_577268.1| DNA polymerase III subunit delta' [Nitrobacter hamburgensis X14] gb|ABE62808.1| DNA polymerase III, delta prime subunit [Nitrobacter hamburgensis X14] Length = 346 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 257/346 (74%), Positives = 285/346 (82%) Query: 1 MSARKVEQESAARHPRETPDLFGHREAETALLDAYRSGRIPHAWLIGGAQGIGKATLAYR 60 M AR E + HPRET LFGH EAE LLDAYR GRIPHAWLIGGA GIGKATLAYR Sbjct: 1 MIARPTAAEKSVLHPRETTALFGHGEAERTLLDAYRGGRIPHAWLIGGAPGIGKATLAYR 60 Query: 61 MARFVLAFRNPKSSQVQQAPTLRVDPADPVARQITAGAHGGLLVLERGVNDRGVMRTVIT 120 MARFVLA +P S VQ A TL +DP PVAR + A HGGLL LER N++GVMRTVI+ Sbjct: 61 MARFVLAHGDPAMSPVQSAETLELDPMHPVARHVAADTHGGLLTLERTPNEKGVMRTVIS 120 Query: 121 VDETRETISFFGSTAAVDGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPS 180 V++TRETI+FFGSTAAV GWRVCIVDTVDELNPNAANALLK+LEEPP SLFLLVSHAP+ Sbjct: 121 VEQTRETIAFFGSTAAVGGWRVCIVDTVDELNPNAANALLKVLEEPPHLSLFLLVSHAPA 180 Query: 181 RVLPTILSRCRKLLLRPLETDDVVRAAAAATDIESDDPALLEAAAASEGSVGRALSLLGG 240 R+LPTI SRCRKL LRPL DV+RAAA A I DD +L EAA A+EGSV RAL+L+GG Sbjct: 181 RILPTIQSRCRKLALRPLAAGDVIRAAAEAARIAPDDASLREAADAAEGSVARALALVGG 240 Query: 241 DALKLQQRTAALLATLPSVDPRELHALGEALGTSDRVALAAFIDGIDRWMSERMRTGDAN 300 ALKL QRTAALL +LP VDPRELHALG+ALG SDR AL AF+D +DRW++ER+RTGDAN Sbjct: 241 GALKLHQRTAALLDSLPQVDPRELHALGDALGGSDRAALGAFVDSVDRWIAERLRTGDAN 300 Query: 301 ANLPRLARLAEVWEKIVRAARDTEAYNLERKPLVFSVFSMLADATR 346 ANLPRLARLAEVWEKI AAR+TE YNLERKPLVFSVF +LA+ATR Sbjct: 301 ANLPRLARLAEVWEKINNAARETETYNLERKPLVFSVFGLLAEATR 346