BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0006.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japo... 689 0.0 ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypept... 677 0.0 ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypept... 675 0.0 ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypept... 626 e-177 ref|ZP_08629853.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhi... 626 e-177 >ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] Length = 451 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/406 (81%), Positives = 370/406 (91%), Gaps = 1/406 (0%) Query: 5 AGRCWRGLVAAAVALAIGCGGMVYAANNSVQGAKK-EEGGFDGDAPTAILVEASSGSVLF 63 +G R LVA + ++G G++YAAN S+QGAKK E+ GFDGDAPTAIL+EASSGSVLF Sbjct: 46 SGMLVRALVAGLLLASLGWCGVLYAANQSIQGAKKAEDTGFDGDAPTAILIEASSGSVLF 105 Query: 64 EKNADELRAPSSMMKLMTAEVVFDAIKKGDIKLTDEYRISENAWRRGGAPSGTSTMFAAI 123 EKNADELRAPSSMMKLMTAEVVF+AI+KGDIKLTDEYRISENAWR+GGAPSG STMFAAI Sbjct: 106 EKNADELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENAWRKGGAPSGGSTMFAAI 165 Query: 124 NSKVSVDDLLHGAIIPSGNDACIALAEGIAGNEHTFATDFMTKRARELGMTKSTFGNSNG 183 NSKVSVDDLLHGAII SGNDACIALAE +AGNE FA DFMTKRARELGMTKSTFGNSNG Sbjct: 166 NSKVSVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTKRARELGMTKSTFGNSNG 225 Query: 184 LPDPANKMTVRELATLARHIILTYPDRYKLFGEKEFTWNKIRQQNRNPLLNALPGADGLK 243 LPDP NKMTVREL LARHIIL +P+ YKLFGEKE+TWNKIRQ NRNPLLN++ GADGLK Sbjct: 226 LPDPGNKMTVRELGILARHIILDFPEFYKLFGEKEYTWNKIRQPNRNPLLNSMEGADGLK 285 Query: 244 TGYTKEGGYGMVGSAVQNDTRLIVVVNGLEDSEDRATEAKKMLEWGFRSFETRTLIAANQ 303 TGYTKEGGYGMVGSAVQN TRLIVVVNGLED EDRATEAKKMLEWGFR+FETRTLIAA+Q Sbjct: 286 TGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEWGFRNFETRTLIAADQ 345 Query: 304 PVGYARVFGGESRSVKLVSPDPIKVMVSKNGNDKLLARIIYSGPVKAPITAGQKIGVVRV 363 PVGYA+VFGGESRSVKL++ P+KVMV KNG+DKL+AR++YSGPV+AP+ AGQK+GVV+V Sbjct: 346 PVGYAKVFGGESRSVKLIAKTPVKVMVHKNGSDKLIARVVYSGPVRAPVEAGQKVGVVKV 405 Query: 364 WRGANVAMETPVFAADAVGTGSTMRRALDGAQELVIGMFRAGVEKL 409 WR N+A+ETPV+AA+A+GTGSTMRRA+DGA ELVIGMFRAG EKL Sbjct: 406 WRSGNIAVETPVYAAEAIGTGSTMRRAIDGASELVIGMFRAGAEKL 451 >ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] Length = 384 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/384 (84%), Positives = 354/384 (92%) Query: 26 MVYAANNSVQGAKKEEGGFDGDAPTAILVEASSGSVLFEKNADELRAPSSMMKLMTAEVV 85 M+YAAN SVQGA+KEEGGFDGDAPTAIL+EA+SGSVLFEKNADELRAPSSMMKLMTAEVV Sbjct: 1 MLYAANQSVQGARKEEGGFDGDAPTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVV 60 Query: 86 FDAIKKGDIKLTDEYRISENAWRRGGAPSGTSTMFAAINSKVSVDDLLHGAIIPSGNDAC 145 F+A+K+G IKL DEYRISENAWRRGGAPSG STMFAA+NSKVSV DLLHGAII SGNDAC Sbjct: 61 FNAVKEGTIKLNDEYRISENAWRRGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDAC 120 Query: 146 IALAEGIAGNEHTFATDFMTKRARELGMTKSTFGNSNGLPDPANKMTVRELATLARHIIL 205 IALAEG+AGNE FA D+MTKRARELG+TKSTF NSNGLPDP NKMTVRELA LARHIIL Sbjct: 121 IALAEGMAGNEKIFAADYMTKRARELGLTKSTFANSNGLPDPGNKMTVRELAMLARHIIL 180 Query: 206 TYPDRYKLFGEKEFTWNKIRQQNRNPLLNALPGADGLKTGYTKEGGYGMVGSAVQNDTRL 265 +P+ YK+FGEKEFTWNKIRQQNRNPLLNA+ GADGLKTG+TKEGGYGMVGSAVQN TRL Sbjct: 181 DFPEFYKIFGEKEFTWNKIRQQNRNPLLNAMEGADGLKTGFTKEGGYGMVGSAVQNGTRL 240 Query: 266 IVVVNGLEDSEDRATEAKKMLEWGFRSFETRTLIAANQPVGYARVFGGESRSVKLVSPDP 325 IVVVNGLED EDRATEAKKMLEWGFR+FETRTL AA+QP+GYA+VFGGESRSVKL SP P Sbjct: 241 IVVVNGLEDPEDRATEAKKMLEWGFRNFETRTLFAADQPIGYAKVFGGESRSVKLSSPVP 300 Query: 326 IKVMVSKNGNDKLLARIIYSGPVKAPITAGQKIGVVRVWRGANVAMETPVFAADAVGTGS 385 +KVMV KNG DKL+ARI+YSGPV+AP+ GQK+GVVRVWRG N+AME PV+AA+AV GS Sbjct: 301 VKVMVQKNGGDKLIARIVYSGPVRAPVEPGQKVGVVRVWRGPNIAMEAPVYAAEAVERGS 360 Query: 386 TMRRALDGAQELVIGMFRAGVEKL 409 TMRRA+DGA ELVIGMFRAG EKL Sbjct: 361 TMRRAIDGASELVIGMFRAGAEKL 384 >ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS 278] emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS 278] Length = 384 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/384 (84%), Positives = 354/384 (92%) Query: 26 MVYAANNSVQGAKKEEGGFDGDAPTAILVEASSGSVLFEKNADELRAPSSMMKLMTAEVV 85 M+YAAN SVQGAKK++GGFDGDAPTAILVEA+SGSVLFEKNADELRAPSSMMKLMTAEVV Sbjct: 1 MLYAANQSVQGAKKDDGGFDGDAPTAILVEATSGSVLFEKNADELRAPSSMMKLMTAEVV 60 Query: 86 FDAIKKGDIKLTDEYRISENAWRRGGAPSGTSTMFAAINSKVSVDDLLHGAIIPSGNDAC 145 F+A+K+G +KL DEYRISENAWR+GGAPSGTSTMFAA+NSKV V DLLHGAII SGNDAC Sbjct: 61 FNAVKEGTVKLNDEYRISENAWRKGGAPSGTSTMFAALNSKVPVSDLLHGAIIQSGNDAC 120 Query: 146 IALAEGIAGNEHTFATDFMTKRARELGMTKSTFGNSNGLPDPANKMTVRELATLARHIIL 205 IALAEG+AGNE FA D+MTKRARELG++KSTF NSNGLPDP NKMTVREL+ LARHIIL Sbjct: 121 IALAEGMAGNEKIFAADYMTKRARELGLSKSTFANSNGLPDPGNKMTVRELSMLARHIIL 180 Query: 206 TYPDRYKLFGEKEFTWNKIRQQNRNPLLNALPGADGLKTGYTKEGGYGMVGSAVQNDTRL 265 +P+ YK+FGEKEFTWNKIRQQNRNPLLNA+ GADGLKTGYTKEGGYGMVGSAVQN TRL Sbjct: 181 DFPEFYKIFGEKEFTWNKIRQQNRNPLLNAMEGADGLKTGYTKEGGYGMVGSAVQNGTRL 240 Query: 266 IVVVNGLEDSEDRATEAKKMLEWGFRSFETRTLIAANQPVGYARVFGGESRSVKLVSPDP 325 IVVVNGLED EDRATEAKKMLEWGFR+FETRTL AA+Q +GYA+VFGGESRSVKL SP P Sbjct: 241 IVVVNGLEDPEDRATEAKKMLEWGFRNFETRTLFAADQTLGYAKVFGGESRSVKLSSPVP 300 Query: 326 IKVMVSKNGNDKLLARIIYSGPVKAPITAGQKIGVVRVWRGANVAMETPVFAADAVGTGS 385 +KVMV KNG +KLLARIIYSGPVKAP+ AGQK+GVVRVWRG N+AME PV+A +AVG GS Sbjct: 301 VKVMVQKNGGEKLLARIIYSGPVKAPVEAGQKVGVVRVWRGPNIAMEAPVYAGEAVGMGS 360 Query: 386 TMRRALDGAQELVIGMFRAGVEKL 409 TMRRA+DGA ELVIGMFRAG EKL Sbjct: 361 TMRRAIDGASELVIGMFRAGAEKL 384 >ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 413 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 310/406 (76%), Positives = 348/406 (85%), Gaps = 3/406 (0%) Query: 4 RAGRCWRGLVAAAVALAIGCGGMVYAANNSVQGAKKEEGGFDGDAPTAILVEASSGSVLF 63 R G WRGLVA AV L IG G+V AANNS+QGAKKEE ++ APTAILVEA SGSVLF Sbjct: 11 RGGFAWRGLVAVAV-LTIGLDGIVLAANNSIQGAKKEEI-YETSAPTAILVEAKSGSVLF 68 Query: 64 EKNADELRAPSSMMKLMTAEVVFDAIKKGDIKLTDEYRISENAWRRGGAPSGTSTMFAAI 123 EKNADELRAPSSMMKLMTAEVVF+AI+KG+IKLTDEY ISEN WR+GGAPSG STMFAAI Sbjct: 69 EKNADELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYVISENTWRKGGAPSGGSTMFAAI 128 Query: 124 NSKVSVDDLLHGAIIPSGNDACIALAEGIAGNEHTFATDFMTKRARELGMTKSTFGNSNG 183 NS+VSV DLLHGAII SGND+C+ALAEGIAGNE FA + MT RARELG+T+STF NSNG Sbjct: 129 NSRVSVQDLLHGAIIQSGNDSCMALAEGIAGNESAFA-EKMTARARELGLTRSTFANSNG 187 Query: 184 LPDPANKMTVRELATLARHIILTYPDRYKLFGEKEFTWNKIRQQNRNPLLNALPGADGLK 243 LP P NKMTVRELA LARHIILTYPD YKLFGE+EFTWNKIRQ NRN LL A+ GADGLK Sbjct: 188 LPHPDNKMTVRELAVLARHIILTYPDFYKLFGEREFTWNKIRQLNRNALLTAMDGADGLK 247 Query: 244 TGYTKEGGYGMVGSAVQNDTRLIVVVNGLEDSEDRATEAKKMLEWGFRSFETRTLIAANQ 303 TGYTKEGGYGMVGS VQN TRLIVVVNGLE ++DRAT AKK+LEWGFR+FE RTL AA Q Sbjct: 248 TGYTKEGGYGMVGSVVQNGTRLIVVVNGLESADDRATAAKKLLEWGFRNFEIRTLFAAEQ 307 Query: 304 PVGYARVFGGESRSVKLVSPDPIKVMVSKNGNDKLLARIIYSGPVKAPITAGQKIGVVRV 363 PVGYA+VFGG+S SV++ + DP++VMV KNGNDKLLARI+Y+GPV+AP+ Q IGV++V Sbjct: 308 PVGYAKVFGGDSGSVQIAASDPVQVMVQKNGNDKLLARIVYTGPVRAPVAPEQPIGVIKV 367 Query: 364 WRGANVAMETPVFAADAVGTGSTMRRALDGAQELVIGMFRAGVEKL 409 WRG VA+E PV A AVG GSTMRRALDGA ELV+G+ R+GV +L Sbjct: 368 WRGKEVAVEMPVHATKAVGVGSTMRRALDGAIELVVGIVRSGVARL 413 >ref|ZP_08629853.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07496.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobiaceae bacterium SG-6C] Length = 416 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 300/383 (78%), Positives = 345/383 (90%), Gaps = 2/383 (0%) Query: 27 VYAANNSVQGAKKEEGGFDGDAPTAILVEASSGSVLFEKNADELRAPSSMMKLMTAEVVF 86 V AANNSVQGAKKEEG +D DAPTAIL+EA SGS+LFEKNADELRAPSSMMKLMTAEVVF Sbjct: 36 VQAANNSVQGAKKEEG-YDVDAPTAILIEAKSGSILFEKNADELRAPSSMMKLMTAEVVF 94 Query: 87 DAIKKGDIKLTDEYRISENAWRRGGAPSGTSTMFAAINSKVSVDDLLHGAIIPSGNDACI 146 DA+KKG+IKLTDE+RISEN WR+GGAPSG STMFAAINS+VSVDDLLHGAII SGND+C+ Sbjct: 95 DALKKGEIKLTDEFRISENTWRKGGAPSGGSTMFAAINSRVSVDDLLHGAIIQSGNDSCM 154 Query: 147 ALAEGIAGNEHTFATDFMTKRARELGMTKSTFGNSNGLPDPANKMTVRELATLARHIILT 206 ALAEG++ E FA + MTKRARELG+ KSTF NSNGLPDP NKMTVRELA LARHII T Sbjct: 155 ALAEGLSNTEAAFA-ERMTKRARELGLKKSTFANSNGLPDPGNKMTVRELAMLARHIIQT 213 Query: 207 YPDRYKLFGEKEFTWNKIRQQNRNPLLNALPGADGLKTGYTKEGGYGMVGSAVQNDTRLI 266 YP+ YKLFGE+EFTWNKIRQQNRNPLL L GADGLKTG+TKEGGYGMVGSAVQN RLI Sbjct: 214 YPEHYKLFGEREFTWNKIRQQNRNPLLTMLEGADGLKTGFTKEGGYGMVGSAVQNGMRLI 273 Query: 267 VVVNGLEDSEDRATEAKKMLEWGFRSFETRTLIAANQPVGYARVFGGESRSVKLVSPDPI 326 VVVNGLED++DRA+EAKK+LE+GFR+FE RTL AA+Q VGYA+VFGG+SRSVKL SP+PI Sbjct: 274 VVVNGLEDADDRASEAKKLLEYGFRNFEARTLFAADQTVGYAKVFGGDSRSVKLASPEPI 333 Query: 327 KVMVSKNGNDKLLARIIYSGPVKAPITAGQKIGVVRVWRGANVAMETPVFAADAVGTGST 386 VMV++NG+DKL+ARI+Y+GPV+AP+ GQ+IGV++VWRG N+AME+P+ AA+ + TGST Sbjct: 334 SVMVNRNGSDKLVARIVYTGPVRAPVQPGQRIGVLKVWRGTNIAMESPLVAAEPIATGST 393 Query: 387 MRRALDGAQELVIGMFRAGVEKL 409 RRA+DGA ELVIG+FRAG EKL Sbjct: 394 TRRAIDGASELVIGLFRAGAEKL 416