BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0009.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07026793.1| TRAP dicarboxylate transporter, DctM subunit ... 577 e-162 ref|ZP_08629357.1| TRAP dicarboxylate transporter [Bradyrhizobia... 540 e-151 ref|NP_879441.1| hypothetical protein BP0597 [Bordetella pertuss... 537 e-150 ref|NP_888681.1| hypothetical protein BB2138 [Bordetella bronchi... 537 e-150 ref|NP_882642.1| hypothetical protein BPP0285 [Bordetella parape... 537 e-150 >ref|ZP_07026793.1| TRAP dicarboxylate transporter, DctM subunit [Afipia sp. 1NLS2] gb|EFI51636.1| TRAP dicarboxylate transporter, DctM subunit [Afipia sp. 1NLS2] Length = 614 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 319/485 (65%), Positives = 355/485 (73%), Gaps = 62/485 (12%) Query: 1 VISMGLISLPIMLRYGYDRRMATGIIAASGTLAQIIPPSLVLIVMADQLGKSVGDMYEGA 60 VISMGLISLPIMLRYGYDRR+ATGIIAASGTLAQIIPPSLVLIVMADQLG+SVGDMYEGA Sbjct: 128 VISMGLISLPIMLRYGYDRRVATGIIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYEGA 187 Query: 61 FIPGLVLAGLYAGYAFLVTLIFPKAAPGLPADAIGFREKSGGRGLWSLGALFLASCA--- 117 FIPG+VL+ LYA Y FL+T+ PKA PGLP +A R+ + L LA+ Sbjct: 188 FIPGIVLSILYASYIFLLTIFAPKAVPGLPLEAQTLRDPETAQHRMVLPVAALAAAGAAY 247 Query: 118 --------FGW----FMMRNSDT---HGADFVVL-----SMFFGIL----FAFFVAVVNW 153 F W F M +S+ HG F++L F GI+ + F+A V Sbjct: 248 LFAVKLGLFDWTAPVFDMISSNVQVRHGFWFMILLAIFVKPFIGIVRTMTLSLFIAFVGS 307 Query: 154 IIDRLTGFRFLSA-----------------------------------MAQQTTFVMVPP 178 I L F S +A+Q FVMVPP Sbjct: 308 TILALIAMSFTSVKAGADYVVLTMSLVVAISFVIAVLNKLLGLKLLSRLAEQVVFVMVPP 367 Query: 179 LFLIFLVLGTIFIGIATPTEGGAMGAAGALILGAFKRRLSWDLVRQAVESTAKLSAFVVF 238 L L+FLVLGTIFIG+ATPTEGGAMGA GALILG KRRLS+DL RQAVESTAKLSAFV+F Sbjct: 368 LGLVFLVLGTIFIGVATPTEGGAMGATGALILGLMKRRLSFDLTRQAVESTAKLSAFVMF 427 Query: 239 ILVGARVFSLTFYGVNGHVWVEHLLTSLPGGQVGFLIFVNVFVFVLAFFLDFFELAFIVI 298 ILVGARVFSLTFYGV+GH WVEHLL SLPGGQVGFL+FVN FVFVLAFFLDFFELAFI+I Sbjct: 428 ILVGARVFSLTFYGVDGHRWVEHLLVSLPGGQVGFLLFVNAFVFVLAFFLDFFELAFIII 487 Query: 299 PLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYLDRVTGKRME 358 PLLGP AEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSY+DRV+G+RME Sbjct: 488 PLLGPVAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYIDRVSGRRME 547 Query: 359 PVTTGQIYWGAVPFVVIQVIMVLLVILFPAMVMHYKGAASTIDPNSVKIEVPQIDLPPLD 418 PVTT QIYWG+VPFV+IQVIMV LVILFP MVMHYKG ST+DP+ VKIE+PQI++P LD Sbjct: 548 PVTTAQIYWGSVPFVIIQVIMVCLVILFPQMVMHYKGTLSTVDPSKVKIEIPQIEMPQLD 607 Query: 419 FGQPK 423 G P Sbjct: 608 LGIPN 612 >ref|ZP_08629357.1| TRAP dicarboxylate transporter [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07850.1| TRAP dicarboxylate transporter [Bradyrhizobiaceae bacterium SG-6C] Length = 615 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 312/487 (64%), Positives = 346/487 (71%), Gaps = 68/487 (13%) Query: 1 VISMGLISLPIMLRYGYDRRMATGIIAASGTLAQIIPPSLVLIVMADQLGKSVGDMYEGA 60 VISMGLISLPIMLRYGYDRR+ATG+IAASGTLAQIIPPSLVLIVMADQLG+SVGDMYEGA Sbjct: 128 VISMGLISLPIMLRYGYDRRVATGVIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYEGA 187 Query: 61 FIPGLVLAGLYAGYAFLVTLIFPKAAPGLPADAIGFREKSGGRG---------------- 104 FIPG+VL+ LYA Y FLV FP A PGLP +A RE + Sbjct: 188 FIPGIVLSILYATYIFLVATFFPSATPGLPLEAQTLREPETAKHPVILPLAAISAAATAY 247 Query: 105 --LWSLGALFLASCAFGWFMMRNSDTHGADFVVLSMFFGILFAFFVAVVNWI-------- 154 + LG S F HG FV+L+ G+ F F+ ++ + Sbjct: 248 FFVVKLGLFDWTSPVFNKISENPLVLHGFWFVILT---GLFFKPFIGIIRTMTLSLFIVL 304 Query: 155 ---------IDRLTGFR-----------------FLSAMAQQTT-------------FVM 175 I R T + F+ A+ + T FVM Sbjct: 305 IGATAIALEIMRFTEVKAGADYVVLTMSIVVAMSFVLAVINRITGLKLLSKLAEQVVFVM 364 Query: 176 VPPLFLIFLVLGTIFIGIATPTEGGAMGAAGALILGAFKRRLSWDLVRQAVESTAKLSAF 235 VPPL LIFLVLGTIFIG+ATPTEGGAMGAAGA+IL KRRL++DL RQA ESTAKLSAF Sbjct: 365 VPPLGLIFLVLGTIFIGVATPTEGGAMGAAGAMILAMMKRRLNFDLTRQAAESTAKLSAF 424 Query: 236 VVFILVGARVFSLTFYGVNGHVWVEHLLTSLPGGQVGFLIFVNVFVFVLAFFLDFFELAF 295 V+FILVGARVFSLTFYGV+GH WVE LL SLPGGQ GFLIFVN FVFVLAFFLDFFELAF Sbjct: 425 VIFILVGARVFSLTFYGVDGHRWVEELLVSLPGGQTGFLIFVNAFVFVLAFFLDFFELAF 484 Query: 296 IVIPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYLDRVTGK 355 IVIPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPK++Y DRV+GK Sbjct: 485 IVIPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKEAYTDRVSGK 544 Query: 356 RMEPVTTGQIYWGAVPFVVIQVIMVLLVILFPAMVMHYKGAASTIDPNSVKIEVPQIDLP 415 RMEPVTTGQIYWG+VPFV+IQVIMV LVI FPAMVMHYKGA STIDPN V I++ Q ++P Sbjct: 545 RMEPVTTGQIYWGSVPFVIIQVIMVGLVIAFPAMVMHYKGAVSTIDPNKVDIQIQQQEMP 604 Query: 416 PLDFGQP 422 LDFG P Sbjct: 605 ALDFGPP 611 >ref|NP_879441.1| hypothetical protein BP0597 [Bordetella pertussis Tohama I] emb|CAE44923.1| putative membrane protein [Bordetella pertussis Tohama I] gb|AEE66061.1| hypothetical protein BPTD_0604 [Bordetella pertussis CS] Length = 552 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 271/412 (65%), Positives = 329/412 (79%), Gaps = 7/412 (1%) Query: 1 VISMGLISLPIMLRYGYDRRMATGIIAASGTLAQIIPPSLVLIVMADQLGKSVGDMYEGA 60 VISMGLISLPIMLRYGYDRR+A+G+IAASGTL+QIIPPSLVLI++ADQLG+S+GDMY A Sbjct: 127 VISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIPPSLVLIILADQLGRSIGDMYRAA 186 Query: 61 FIPGLVLAGLYAGYAFLVTLIFPKAAPGLPADAIGFREKSGGRGLWSLGALFLASCAFGW 120 +PG VLAG Y Y +V+L+ P AAP LP +A FRE +G RG SL L L S + Sbjct: 187 MVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLISSLSAY 246 Query: 121 FM---MRNSDTHGADFVVLSMFFGILFAFFVAVVNWIIDRLTGFRFLSAMAQQTTFVMVP 177 + + N + VV+S+ L AF +A+ N ++ + LSA+A++ TFVM+P Sbjct: 247 VLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN----KVFRLKMLSALAERVTFVMIP 302 Query: 178 PLFLIFLVLGTIFIGIATPTEGGAMGAAGALILGAFKRRLSWDLVRQAVESTAKLSAFVV 237 PLFLIFLVLGTIFIG+ATPTEGGAMGA GA+I+ +RRL+ DL++QA+++T KLS FVV Sbjct: 303 PLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRRRLTLDLLKQAMDTTTKLSCFVV 362 Query: 238 FILVGARVFSLTFYGVNGHVWVEHLLTSLPGGQVGFLIFVNVFVFVLAFFLDFFELAFIV 297 FILVG+ VF LTF GVNG +WVEHLL LPGG+ GFLI V+V FVLAFFLDFFELAFI+ Sbjct: 363 FILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLIVVSVLTFVLAFFLDFFELAFII 422 Query: 298 IPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYLDRVTGKRM 357 +PLLGP A+K+GIDLIWFG+IL VNMQTSFMHPPFGFALFYLRSVAPKD+Y D++TGK + Sbjct: 423 VPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGKII 482 Query: 358 EPVTTGQIYWGAVPFVVIQVIMVLLVILFPAMVMHYKGAASTIDPNSVKIEV 409 +PVTTGQIYWG+VPF+VIQ+ MV V+LFP MVMHYKG ST+DP SVKIEV Sbjct: 483 QPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEV 534 >ref|NP_888681.1| hypothetical protein BB2138 [Bordetella bronchiseptica RB50] emb|CAE32634.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 555 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 270/412 (65%), Positives = 330/412 (80%), Gaps = 7/412 (1%) Query: 1 VISMGLISLPIMLRYGYDRRMATGIIAASGTLAQIIPPSLVLIVMADQLGKSVGDMYEGA 60 VISMGLISLPIMLRYGYDRR+A+G+IAASGTL+QIIPPSLVLI++ADQLG+S+GDMY A Sbjct: 127 VISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIPPSLVLIILADQLGRSIGDMYRAA 186 Query: 61 FIPGLVLAGLYAGYAFLVTLIFPKAAPGLPADAIGFREKSGGRGLWSLGALFLASCAFGW 120 +PG VLAGLY Y +V+L+ P AAP LP +A FRE +G RG SL L L S + Sbjct: 187 MVPGFVLAGLYIAYVVVVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLISSLSAY 246 Query: 121 FM---MRNSDTHGADFVVLSMFFGILFAFFVAVVNWIIDRLTGFRFLSAMAQQTTFVMVP 177 + + N + VV+S+ L AF +A+ N ++ + LSA+A++ TFVM+P Sbjct: 247 VLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN----KVFRLKMLSALAERVTFVMIP 302 Query: 178 PLFLIFLVLGTIFIGIATPTEGGAMGAAGALILGAFKRRLSWDLVRQAVESTAKLSAFVV 237 PLFLIFLVLGTIFIG+ATPTEGGAMGA GA+I+ +RRL+ +L++QA+++T KLS FVV Sbjct: 303 PLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRRRLTLELLKQAMDTTTKLSCFVV 362 Query: 238 FILVGARVFSLTFYGVNGHVWVEHLLTSLPGGQVGFLIFVNVFVFVLAFFLDFFELAFIV 297 FILVG+ VF LTF GVNG +WVEHLL LPGG+ GFLI V+V FVLAFFLDFFELAFI+ Sbjct: 363 FILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLIVVSVLTFVLAFFLDFFELAFII 422 Query: 298 IPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYLDRVTGKRM 357 +PLLGP A+K+GIDLIWFG+IL VNMQTSFMHPPFGFALFYLRSVAPKD+Y D++TGK + Sbjct: 423 VPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGKVI 482 Query: 358 EPVTTGQIYWGAVPFVVIQVIMVLLVILFPAMVMHYKGAASTIDPNSVKIEV 409 +PVTTGQIYWG+VPF+VIQ+ MV V+LFP MVMHYKG ST+DP SVKIE+ Sbjct: 483 QPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEI 534 >ref|NP_882642.1| hypothetical protein BPP0285 [Bordetella parapertussis 12822] ref|NP_886837.1| hypothetical protein BB0288 [Bordetella bronchiseptica RB50] emb|CAE40026.1| putative membrane protein [Bordetella parapertussis] emb|CAE30786.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 552 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 271/412 (65%), Positives = 330/412 (80%), Gaps = 7/412 (1%) Query: 1 VISMGLISLPIMLRYGYDRRMATGIIAASGTLAQIIPPSLVLIVMADQLGKSVGDMYEGA 60 VISMGLISLPIMLRYGYDRR+A+G+IAASGTL+QIIPPSLVLI++ADQLG+S+GDMY A Sbjct: 127 VISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIPPSLVLIILADQLGRSIGDMYRAA 186 Query: 61 FIPGLVLAGLYAGYAFLVTLIFPKAAPGLPADAIGFREKSGGRGLWSLGALFLASCAFGW 120 +PG VLAGLY Y +V+L+ P AAP LP +A FRE +G RG SL L L S + Sbjct: 187 MVPGFVLAGLYIAYVVVVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLISSLSAY 246 Query: 121 FM---MRNSDTHGADFVVLSMFFGILFAFFVAVVNWIIDRLTGFRFLSAMAQQTTFVMVP 177 + + N + VV+S+ L AF +A+ N ++ + LSA+A++ TFVM+P Sbjct: 247 VLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN----KVFRLKMLSALAERVTFVMIP 302 Query: 178 PLFLIFLVLGTIFIGIATPTEGGAMGAAGALILGAFKRRLSWDLVRQAVESTAKLSAFVV 237 PLFLIFLVLGTIFIG+ATPTEGGAMGA GA+I+ +RRL+ +L++QA+++T KLS FVV Sbjct: 303 PLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRRRLTLELLKQAMDTTTKLSCFVV 362 Query: 238 FILVGARVFSLTFYGVNGHVWVEHLLTSLPGGQVGFLIFVNVFVFVLAFFLDFFELAFIV 297 FILVG+ VF LTF GVNG +WVEHLL LPGG+ GFLI V+V FVLAFFLDFFELAFI+ Sbjct: 363 FILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLIVVSVLTFVLAFFLDFFELAFII 422 Query: 298 IPLLGPAAEKLGIDLIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKDSYLDRVTGKRM 357 +PLLGP A+K+GIDLIWFG+IL VNMQTSFMHPPFGFALFYLRSVAPKD+Y D++TGK + Sbjct: 423 VPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGKVI 482 Query: 358 EPVTTGQIYWGAVPFVVIQVIMVLLVILFPAMVMHYKGAASTIDPNSVKIEV 409 +PVTTGQIYWG+VPF+VIQ+ MV V+LFP MVMHYKG ST+DP SVKIEV Sbjct: 483 QPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEV 534