BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0007.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770388.1| two-component hybrid sensor and regulator [Brad... 642 0.0 ref|YP_001206673.1| putative two-component system histidine kina... 568 e-160 ref|YP_001239471.1| signal transduction histidine kinase [Bradyr... 564 e-158 ref|ZP_01044820.1| Signal transduction histidine kinase [Nitroba... 394 e-107 ref|YP_319516.1| Signal transduction histidine kinase [Nitrobact... 385 e-105 >ref|NP_770388.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49013.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 478 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/438 (76%), Positives = 378/438 (86%), Gaps = 6/438 (1%) Query: 4 FKSLTSRIVFLHIVAVAVAAIFLPLLLLWLLNSEINQLHREAMRDQAADLGQNLSVDAAG 63 FKSL SRIVFLHIVAVAV AIFLPL+L WLLNSE++QLHR+AMR QA L + + A G Sbjct: 12 FKSLISRIVFLHIVAVAVVAIFLPLVLFWLLNSEVDQLHRDAMRAQAEVLAERIVPQADG 71 Query: 64 KVQLNLPDSLRGLYSDAYGRYRYDIYDADDHLLFSSHRE----APRLPALANRISGASVT 119 + NLPDSL+GLYS+AYGRY+YDI D++ +LFSS R+ AP P L+ ISGA V+ Sbjct: 72 TLTFNLPDSLKGLYSEAYGRYQYDIRDSEGRVLFSSRRKTGDTAP--PRLSETISGAGVS 129 Query: 120 RLLGGQTLRILVAEDLSHRDVIIDDIVSNFFRRVGWITIPILLILLATDILIFRRAVIPL 179 R++ G+T+RI VAEDLSHRDVIIDDI+SNFFRRVGWITIPILLILLATDI+IFRRAV PL Sbjct: 130 RVIEGRTVRIRVAEDLSHRDVIIDDIISNFFRRVGWITIPILLILLATDIIIFRRAVAPL 189 Query: 180 LRASEEARSIGPARTDIRLPTEGIPSEILPLVTAVNQAFDRLEEGFHVQRQFTADAAHQL 239 +ASEEA +IGPARTDIRLPTE IP EI+PLVTAVNQA DRLE+GF VQRQFTADAAHQL Sbjct: 190 WKASEEASNIGPARTDIRLPTEQIPREIMPLVTAVNQALDRLEDGFRVQRQFTADAAHQL 249 Query: 240 RTPLAILRTRIETLDAAKGTRELHADIESMSRIVSQLLEIAELDTLVLDPGETADLRAVC 299 RTPLAILRTRIETL + + LHADIE MSRIV+QLLEIAELDTLVLDPGETADLRAVC Sbjct: 250 RTPLAILRTRIETLGDREARQALHADIEGMSRIVAQLLEIAELDTLVLDPGETADLRAVC 309 Query: 300 AEVVGSIAPYALAQQKDIALRGTDRPVYVRGNAEMLQRAIFNLAENAIKYTAERTSVDVE 359 EVVG+IAP+ALAQ KDIALRGTD PV V GN+EMLQRAIFNLAENAIK+TA+ TSVDVE Sbjct: 310 TEVVGAIAPFALAQHKDIALRGTDAPVMVHGNSEMLQRAIFNLAENAIKFTAKDTSVDVE 369 Query: 360 VHDNGSVQVRDCGPGIAPAEQGLIFQRFWRSDRQRTDGAGLGLSIVRGVVEDHDATVRVE 419 V D+G V+VRDCGPGIA AE+ LIFQRFWR+DRQR+DGAGLGLSIVRGV EDHDATV VE Sbjct: 370 VGDDGVVRVRDCGPGIADAERELIFQRFWRADRQRSDGAGLGLSIVRGVAEDHDATVAVE 429 Query: 420 NLPSGGAQFTLSFRLARQ 437 NLP GGA+FTL FRLA + Sbjct: 430 NLPGGGAEFTLRFRLAER 447 >ref|YP_001206673.1| putative two-component system histidine kinase (QseC-like) [Bradyrhizobium sp. ORS 278] emb|CAL78456.1| putative two-component system histidine kinase (QseC-like) [Bradyrhizobium sp. ORS 278] Length = 445 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 292/433 (67%), Positives = 339/433 (78%), Gaps = 4/433 (0%) Query: 5 KSLTSRIVFLHIVAVAVAAIFLPLLLLWLLNSEINQLHREAMRDQAADLGQNLSVDAAGK 64 KSL SRIV LHIVAVA+AA+FLPL+L WLL SEI+ LHR+AM+DQA L + L+ A G Sbjct: 4 KSLLSRIVLLHIVAVAIAAVFLPLVLFWLLTSEIDHLHRDAMQDQADALSERLAQAADGT 63 Query: 65 VQLNLPDSLRGLYSDAYGRYRYDIYDADDHLLFSSHREA----PRLPALANRISGASVTR 120 +QLNL S R LYS AYGRY YD+ DA +LFSS + P + A +SGA VTR Sbjct: 64 LQLNLTQSQRDLYSAAYGRYEYDVRDASGQVLFSSRADGSAILPAGASSAGSMSGARVTR 123 Query: 121 LLGGQTLRILVAEDLSHRDVIIDDIVSNFFRRVGWITIPILLILLATDILIFRRAVIPLL 180 + + LR+ VAEDL+HRDVI DDI +NFFRRVGWITIPILL LLA DI+IFRRA+ PLL Sbjct: 124 TISDRVLRVEVAEDLAHRDVITDDIAANFFRRVGWITIPILLSLLAIDIVIFRRALAPLL 183 Query: 181 RASEEARSIGPARTDIRLPTEGIPSEILPLVTAVNQAFDRLEEGFHVQRQFTADAAHQLR 240 RAS+EA IGPARTDIRLPT+ +P+EI PLV AVNQA DRLE+GF +QRQFTADAAHQLR Sbjct: 184 RASQEASRIGPARTDIRLPTDALPAEIRPLVLAVNQALDRLEDGFRMQRQFTADAAHQLR 243 Query: 241 TPLAILRTRIETLDAAKGTRELHADIESMSRIVSQLLEIAELDTLVLDPGETADLRAVCA 300 TPLA+LRTRIET + G EL ADI MSRIV QLLEIAELDTL LDP E ADL AVC Sbjct: 244 TPLAVLRTRIETKGQSAGRAELLADIARMSRIVHQLLEIAELDTLALDPDEIADLHAVCT 303 Query: 301 EVVGSIAPYALAQQKDIALRGTDRPVYVRGNAEMLQRAIFNLAENAIKYTAERTSVDVEV 360 EVV +IAP+ALAQ KDIAL+G D PV+V GNA ML+RAIFNLAENAIKYTA RTSV+VE+ Sbjct: 304 EVVAAIAPFALAQGKDIALKGADTPVHVHGNAVMLERAIFNLAENAIKYTAPRTSVEVEI 363 Query: 361 HDNGSVQVRDCGPGIAPAEQGLIFQRFWRSDRQRTDGAGLGLSIVRGVVEDHDATVRVEN 420 G+V VRD GPGI P+E+G IFQRFWR D + T+GAGLGLSIVR V+EDH A++ V + Sbjct: 364 GAGGAVWVRDRGPGIRPSERGFIFQRFWRGDTRDTEGAGLGLSIVRAVIEDHGASIMVGD 423 Query: 421 LPSGGAQFTLSFR 433 L GG +F+L FR Sbjct: 424 LAGGGTEFSLRFR 436 >ref|YP_001239471.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ35565.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 445 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 294/436 (67%), Positives = 343/436 (78%), Gaps = 4/436 (0%) Query: 2 FRFKSLTSRIVFLHIVAVAVAAIFLPLLLLWLLNSEINQLHREAMRDQAADLGQNLSVDA 61 RF+SL SRIV LHIVAVA+AA+FLPL+L WLL SEI+ LHRE+M++QA LG L A Sbjct: 1 MRFRSLLSRIVLLHIVAVAIAAVFLPLVLFWLLTSEIDHLHRESMQEQADALGDRLVQAA 60 Query: 62 AGKVQLNLPDSLRGLYSDAYGRYRYDIYDADDHLLFSSHREA----PRLPALANRISGAS 117 G +QLNL S R LYS AYGRY YD+ D + +LFSS + P + + ISGA Sbjct: 61 DGTLQLNLTQSQRDLYSAAYGRYTYDVRDPEGQVLFSSRADGRAILPAGASSSGSISGAR 120 Query: 118 VTRLLGGQTLRILVAEDLSHRDVIIDDIVSNFFRRVGWITIPILLILLATDILIFRRAVI 177 VTR +G + LRI VAEDL+HRDVI DDI +NFFRRVGWITIPILL+LLA DI+IFRRA+ Sbjct: 121 VTRTVGDRVLRIEVAEDLAHRDVITDDIAANFFRRVGWITIPILLVLLAIDIMIFRRALA 180 Query: 178 PLLRASEEARSIGPARTDIRLPTEGIPSEILPLVTAVNQAFDRLEEGFHVQRQFTADAAH 237 PLLRASEEA IGPARTDIRLP +G+P+EI PLV AVNQA DRLE+GF +QRQFTADAAH Sbjct: 181 PLLRASEEASRIGPARTDIRLPGDGMPAEIRPLVLAVNQALDRLEDGFRMQRQFTADAAH 240 Query: 238 QLRTPLAILRTRIETLDAAKGTRELHADIESMSRIVSQLLEIAELDTLVLDPGETADLRA 297 QLRTPLA+LRTRIET + G+ EL DI MSRIV QLLEIAELDTL LDP E ADL+A Sbjct: 241 QLRTPLAVLRTRIETTGPSAGSAELLDDIARMSRIVHQLLEIAELDTLALDPEEIADLQA 300 Query: 298 VCAEVVGSIAPYALAQQKDIALRGTDRPVYVRGNAEMLQRAIFNLAENAIKYTAERTSVD 357 VCAEVV +IAP+ALA KDIAL+G D PVY+ GNA ML+RAIFNLAENAIKYTA RTSV+ Sbjct: 301 VCAEVVAAIAPFALAHGKDIALKGPDTPVYIYGNAGMLERAIFNLAENAIKYTAPRTSVE 360 Query: 358 VEVHDNGSVQVRDCGPGIAPAEQGLIFQRFWRSDRQRTDGAGLGLSIVRGVVEDHDATVR 417 VE+ G+V VRD GPGI P+E+G IFQRFWR D + T+GAGLGLSIVR V+EDH A + Sbjct: 361 VEIGSGGAVWVRDRGPGIRPSERGFIFQRFWRGDNRDTEGAGLGLSIVRAVIEDHGAIIM 420 Query: 418 VENLPSGGAQFTLSFR 433 V +L +GG +F+L FR Sbjct: 421 VGDLAAGGTEFSLRFR 436 >ref|ZP_01044820.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ37601.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 456 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/446 (48%), Positives = 288/446 (64%), Gaps = 17/446 (3%) Query: 5 KSLTSRIVFLHIVAVAVAAIFLPLLLLWLLNSEINQLHREAMRDQAADLGQNLSVDAAGK 64 +S+ SRIV LH+VA+ +AA+ L +L W L S++ + M Q ++L G Sbjct: 5 RSILSRIVVLHVVAIVIAAVVLRSVLHWSLASDVAKFQLHKMAAQIEIFARHLEPRPGGG 64 Query: 65 VQLNLPDSLRGLYSDAYGRYRYDIYDADDHLLFSSHREAPRLPAL--------------- 109 L+LPDS R YS+AYGRY+Y I D ++FSS L A+ Sbjct: 65 WSLHLPDSARDQYSEAYGRYKYAIIDDTGSVIFSSSPSKNALFAIDPNANGIVPHKALTR 124 Query: 110 --ANRISGASVTRLLGGQTLRILVAEDLSHRDVIIDDIVSNFFRRVGWITIPILLILLAT 167 A I+GASV R +GG + I VAE+LSH DV++DDI+++F R+V WI +P+L +LLA Sbjct: 125 GGAKTITGASVRRDIGGYPVWIQVAEELSHSDVVVDDILASFLRQVVWIIVPVLFLLLAA 184 Query: 168 DILIFRRAVIPLLRASEEARSIGPARTDIRLPTEGIPSEILPLVTAVNQAFDRLEEGFHV 227 DI+IFR A+ PL RAS A+ I P R ++RLPT+ +P EILPLV AVNQA DR E GF Sbjct: 185 DIVIFRLAIRPLHRASSRAKHISPTRLEVRLPTDDMPPEILPLVEAVNQALDRFEHGFLA 244 Query: 228 QRQFTADAAHQLRTPLAILRTRIETLDAAKGTRELHADIESMSRIVSQLLEIAELDTLVL 287 QR+F A+AAH++RTPLAILRTRIETL ++ + L D+++MSR+V QLL+ EL+T V+ Sbjct: 245 QREFAANAAHEIRTPLAILRTRIETLPHSEASHALGRDVDNMSRVVGQLLDATELETAVV 304 Query: 288 DPGETADLRAVCAEVVGSIAPYALAQQKDIALRGTDRPVYVRGNAEMLQRAIFNLAENAI 347 DP E ADL VC EV IAP AL Q K I L D PV V+GNAEM++RA NL ENAI Sbjct: 305 DPEEIADLHEVCVEVAEFIAPLALKQGKSIELMCADEPVLVKGNAEMIRRAARNLVENAI 364 Query: 348 KYTAERTSVDVEVHDNGSVQVRDCGPGIAPAEQGLIFQRFWRSDRQRTDGAGLGLSIVRG 407 +T + TS+++ V +GS+ V D G G+ A++ IFQRFWR GAGLGLSIV Sbjct: 365 HHTPQGTSIELIVSTDGSISVIDNGDGVPWADREFIFQRFWRRSPHTAGGAGLGLSIVEK 424 Query: 408 VVEDHDATVRVENLPSGGAQFTLSFR 433 +VE H +V VE+ P GA+FT+ FR Sbjct: 425 IVEAHQGSVAVEDAPGRGAKFTMRFR 450 >ref|YP_319516.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA06164.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 456 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/452 (49%), Positives = 292/452 (64%), Gaps = 17/452 (3%) Query: 5 KSLTSRIVFLHIVAVAVAAIFLPLLLLWLLNSEINQLHREAMRDQAADLGQNLSVDAAGK 64 +S+ SRIV LH+VA+ VAA+ L +L W L S++ +L + M Q ++L +AG Sbjct: 5 RSILSRIVVLHVVAIIVAALVLRSILHWSLASDVAELQLDKMATQIELFARHLKPSSAGG 64 Query: 65 VQLNLPDSLRGLYSDAYGRYRYDIYD-ADDHLLFSSHREAP----------------RLP 107 LNLPD R Y +AYGRY Y I D A +L SS + P R Sbjct: 65 WSLNLPDGTREQYLEAYGRYSYAIIDDAGSVILASSPDKTPLFAIDSSAKGIVPHNTRTE 124 Query: 108 ALANRISGASVTRLLGGQTLRILVAEDLSHRDVIIDDIVSNFFRRVGWITIPILLILLAT 167 A I+GAS R++ G + I VAEDLSH DV++DD+++NF RRV WI +P+LL+LLA Sbjct: 125 GGARTIAGASARRVIDGHPVWIQVAEDLSHSDVVVDDVLTNFLRRVVWIVVPVLLLLLAA 184 Query: 168 DILIFRRAVIPLLRASEEARSIGPARTDIRLPTEGIPSEILPLVTAVNQAFDRLEEGFHV 227 DI+IF A+ PL RAS AR I P R D+RLPT+ +PSEILPLV AVNQA DRLE GF Sbjct: 185 DIVIFLLAIRPLHRASGRARDISPTRLDVRLPTDDMPSEILPLVEAVNQALDRLEHGFLA 244 Query: 228 QRQFTADAAHQLRTPLAILRTRIETLDAAKGTRELHADIESMSRIVSQLLEIAELDTLVL 287 QR+F ADAAH+LRTPLAILRTRIETL +L D+E+MSR+VSQLL+ EL+T V+ Sbjct: 245 QREFAADAAHELRTPLAILRTRIETLPLNDSIHDLARDVENMSRVVSQLLDATELETAVV 304 Query: 288 DPGETADLRAVCAEVVGSIAPYALAQQKDIALRGTDRPVYVRGNAEMLQRAIFNLAENAI 347 DP AD+ VC EV IAP AL Q K I L ++ V V+GNAEM++RA NL ENA+ Sbjct: 305 DPDAVADIHGVCVEVAEFIAPLALKQGKSIELMCSEESVLVKGNAEMIRRATRNLVENAL 364 Query: 348 KYTAERTSVDVEVHDNGSVQVRDCGPGIAPAEQGLIFQRFWRSDRQRTDGAGLGLSIVRG 407 +T E T++ + + +GS+ V D G G+ A++ L+FQRFWR + T GAGLGLSIV Sbjct: 365 HHTPEDTTIQIVISADGSISVIDNGDGVPVADRKLVFQRFWRRSPRTTGGAGLGLSIVEK 424 Query: 408 VVEDHDATVRVENLPSGGAQFTLSFRLARQEP 439 +VE H ++ V++ P GA+FT+ FR + P Sbjct: 425 IVEAHQGSIAVDDAPGRGARFTMRFRRDQGTP 456