BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0006.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770387.1| two-component response regulator [Bradyrhizobiu... 380 e-104 ref|YP_001239470.1| putative two-component response regulator [B... 352 2e-95 ref|YP_001206674.1| putative two-component response regulator (Q... 350 7e-95 ref|ZP_01044819.1| two component transcriptional regulatory prot... 306 2e-81 ref|YP_578490.1| two component transcriptional regulator [Nitrob... 303 1e-80 >ref|NP_770387.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49012.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/224 (84%), Positives = 207/224 (92%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MRLLIVEDN ELSRL+A+GL AAGYESD+V S AEAR+A+ SVSYAAMILDLGLPDGDGL Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 SVL ELRR+ +PLPVLVLTARGG+QDRV+GLRSGADDYLAKPFA+EELVARLEAILRRPG Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 QLLG SL+LANL+YDTES+Q+F+D P + SARE SVLEILLRRQGRVVPKKNVEDHIFG Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAEEK 224 L GEVASNAVEVYVSRLRK L EH AKV+IHTIRGVGYLMAEEK Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTEHGAKVVIHTIRGVGYLMAEEK 224 >ref|YP_001239470.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35564.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] Length = 224 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 178/224 (79%), Positives = 195/224 (87%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MRLLIVEDNVELS+LL+ GL AGYE D V S A+ARDAL + YAAMILDLGLPD DGL Sbjct: 1 MRLLIVEDNVELSKLLSQGLGRAGYEVDAVSSAADARDALSGIRYAAMILDLGLPDEDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 +VL+ LRR +DPLPV+VLTARGG+QDRV GLRSGADDYL KPFALEELVARLEAILRRPG Sbjct: 61 AVLTALRRGSDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLEAILRRPG 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 QLLG SL+L NL+YDTES+Q FV G P FSARE SVLEILLRRQGRVVPKK VEDHIFG Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVAGTPRTFSARELSVLEILLRRQGRVVPKKAVEDHIFG 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAEEK 224 L+GEV SNAVEVYVSRLRK L+E+ A V+IHTIRGVGY+MA EK Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLSEYGATVVIHTIRGVGYMMAAEK 224 >ref|YP_001206674.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS 278] emb|CAL78457.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS 278] Length = 224 Score = 350 bits (899), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 176/223 (78%), Positives = 195/223 (87%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MRLL+VEDN ELS+LL+ GL +A Y+ D V S A+ARDAL +SYAAMILDLGLPD DGL Sbjct: 1 MRLLVVEDNNELSKLLSQGLASAFYQVDTVSSAADARDALNDISYAAMILDLGLPDEDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 SVL+ELRR+ DPLPV+VLTARGG+QDRV GLRSGADDYL KPFALEELVARL+AILRRPG Sbjct: 61 SVLTELRRRGDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLQAILRRPG 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 QLLG SL+L NL+YDTES+Q FV GAP SARE SVLEILLRRQGRVVPKK VEDHIFG Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVGGAPRTLSARELSVLEILLRRQGRVVPKKAVEDHIFG 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAEE 223 L+GEV SNAVEVYVSRLRK LAE+ A V+IHTIRGVGY+MA E Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLAEYGATVVIHTIRGVGYMMAAE 223 >ref|ZP_01044819.1| two component transcriptional regulatory protein, winged-helix family protein [Nitrobacter sp. Nb-311A] gb|EAQ37600.1| two component transcriptional regulatory protein, winged-helix family protein [Nitrobacter sp. Nb-311A] Length = 224 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 185/222 (83%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MR+LIVED+ EL+ LLA GL AAGYE D++ +VA+A AL + YAA+ILDLGLPDGDGL Sbjct: 1 MRVLIVEDSEELADLLAKGLQAAGYEIDLLTNVADAFSALGTTRYAALILDLGLPDGDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 S+L ELR + DPLPVLVLTARGGV+DRVSGLRSGADDYL KPF+ +ELVARLEA+LRRPG Sbjct: 61 SILRELRHRKDPLPVLVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRPG 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 QLLGSSLKLAN+ +D+E +Q FVD P SARE +VLE+LLRR+G VV KK +ED IFG Sbjct: 121 QLLGSSLKLANVTFDSEGRQAFVDMKPQNLSAREIAVLELLLRRKGNVVSKKLLEDQIFG 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAE 222 L+G+VASNAVEVYV RLRK L + AKV I TIRGVGY+M E Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLDIGAKVKISTIRGVGYVMME 222 >ref|YP_578490.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE64030.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 224 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 154/222 (69%), Positives = 185/222 (83%) Query: 1 MRLLIVEDNVELSRLLASGLMAAGYESDVVHSVAEARDALRSVSYAAMILDLGLPDGDGL 60 MR+LIVED+ EL+ LLA GL AAGYE DV+ +V++A L + YAA+ILDLGLPDGDGL Sbjct: 1 MRVLIVEDSEELADLLAKGLQAAGYEIDVLANVSDAYSGLGTTRYAALILDLGLPDGDGL 60 Query: 61 SVLSELRRKTDPLPVLVLTARGGVQDRVSGLRSGADDYLAKPFALEELVARLEAILRRPG 120 S+L ELR + DP+P+LVLTARGGV+DRV+GLRSGADDYL KPFA +ELVARLEA+LRRPG Sbjct: 61 SILRELRHRKDPIPILVLTARGGVEDRVNGLRSGADDYLVKPFAFDELVARLEALLRRPG 120 Query: 121 QLLGSSLKLANLIYDTESKQVFVDGAPHVFSARETSVLEILLRRQGRVVPKKNVEDHIFG 180 QLLGSSL+L+N+ +DTE +QVFVD P SARE +VLE+L+RR+G VV KK +ED IFG Sbjct: 121 QLLGSSLRLSNVTFDTEGRQVFVDMKPQNLSAREIAVLELLMRRKGSVVSKKLLEDQIFG 180 Query: 181 LSGEVASNAVEVYVSRLRKLLAEHRAKVIIHTIRGVGYLMAE 222 L+G+VASNAVEVYV RLRK L + AKV I TIRGVGY+M E Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLDIGAKVRITTIRGVGYVMME 222